© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|4785 |
| Gene name | |
| Location | Contig_41:35964..36768 |
| Strand | - |
| Gene length (bp) | 804 |
| Transcript length (bp) | 744 |
| Coding sequence length (bp) | 744 |
| Protein length (aa) | 248 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09177 | Syntaxin-6_N | Syntaxin 6, N-terminal | 7.1E-25 | 9 | 107 |
| PF05739 | SNARE | SNARE domain | 2.6E-06 | 191 | 243 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9HGN3|TLG1_SCHPO | t-SNARE affecting a late Golgi compartment protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tlg1 PE=3 SV=1 | 8 | 229 | 7.0E-21 |
| sp|Q5R6Q2|STX6_PONAB | Syntaxin-6 OS=Pongo abelii GN=STX6 PE=2 SV=1 | 8 | 231 | 8.0E-20 |
| sp|O43752|STX6_HUMAN | Syntaxin-6 OS=Homo sapiens GN=STX6 PE=1 SV=1 | 8 | 231 | 8.0E-20 |
| sp|Q9JKK1|STX6_MOUSE | Syntaxin-6 OS=Mus musculus GN=Stx6 PE=1 SV=1 | 8 | 231 | 3.0E-19 |
| sp|Q63635|STX6_RAT | Syntaxin-6 OS=Rattus norvegicus GN=Stx6 PE=1 SV=1 | 8 | 232 | 9.0E-19 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9HGN3|TLG1_SCHPO | t-SNARE affecting a late Golgi compartment protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tlg1 PE=3 SV=1 | 8 | 229 | 7.0E-21 |
| sp|Q5R6Q2|STX6_PONAB | Syntaxin-6 OS=Pongo abelii GN=STX6 PE=2 SV=1 | 8 | 231 | 8.0E-20 |
| sp|O43752|STX6_HUMAN | Syntaxin-6 OS=Homo sapiens GN=STX6 PE=1 SV=1 | 8 | 231 | 8.0E-20 |
| sp|Q9JKK1|STX6_MOUSE | Syntaxin-6 OS=Mus musculus GN=Stx6 PE=1 SV=1 | 8 | 231 | 3.0E-19 |
| sp|Q63635|STX6_RAT | Syntaxin-6 OS=Rattus norvegicus GN=Stx6 PE=1 SV=1 | 8 | 232 | 9.0E-19 |
| sp|Q03322|TLG1_YEAST | T-SNARE affecting a late Golgi compartment protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TLG1 PE=1 SV=1 | 8 | 231 | 9.0E-18 |
| sp|Q5ZL19|STX6_CHICK | Syntaxin-6 OS=Gallus gallus GN=STX6 PE=2 SV=1 | 8 | 229 | 1.0E-16 |
| sp|O60499|STX10_HUMAN | Syntaxin-10 OS=Homo sapiens GN=STX10 PE=1 SV=1 | 8 | 233 | 2.0E-15 |
| sp|Q946Y7|SYP61_ARATH | Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1 | 2 | 246 | 7.0E-13 |
| sp|Q9SF29|SYP71_ARATH | Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1 | 83 | 245 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0048193 | Golgi vesicle transport | Yes |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0016192 | vesicle-mediated transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 51 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 224 | 246 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|4785 MMSSTTDEDPFLQVQQDVLSQLSSTGALFSSYLRIRSLSTSASSPELIAARSDLESALSSLVDDLADLVASVQAV ESNPAQYGLSAQEVSRRSRLVQDVGAQVDDMRDELTKVLDASTSSQPPQASSSLPDPNSFAVSGADSDDPYTEFE QTQQVEMMRQQDEHLDGVFQTVGNLRRQADDMGRELEEQHEMLELVDNTADRVGSRLQNGMQKLQYVMRKNEDRW SSCCIAVLIFVLILLLVLLLLV* |
| Coding | >OphauG2|4785 ATGATGTCCTCCACCACGGATGAGGACCCGTTTCTTCAGGTCCAGCAAGACGTCCTCTCTCAACTCTCTTCGACG GGCGCCCTCTTCTCATCATACCTCCGTATACGGTCTCTGTCCACCTCGGCCTCGTCCCCCGAGCTTATAGCCGCC CGCTCCGATCTGGAGAGTGCCCTCTCTTCTCTAGTCGATGATCTCGCCGATCTTGTCGCCTCGGTCCAGGCCGTC GAGTCCAACCCTGCCCAATATGGACTATCCGCCCAAGAGGTCTCGCGGCGCAGCCGTCTAGTCCAGGATGTTGGC GCCCAAGTCGATGACATGCGCGACGAGTTGACCAAAGTCCTTGATGCCTCCACCTCATCCCAGCCGCCTCAAGCA TCTTCAAGCTTGCCCGATCCAAACTCGTTTGCCGTATCGGGTGCAGACTCGGACGACCCTTATACCGAATTTGAG CAGACGCAACAGGTGGAAATGATGCGGCAGCAAGACGAGCATCTCGATGGCGTCTTCCAGACTGTCGGCAACCTC CGCCGTCAGGCAGACGACATGGGCCGCGAGCTTGAGGAGCAGCACGAGATGCTTGAGCTTGTTGACAATACGGCT GATCGTGTCGGCAGCCGCCTGCAAAACGGCATGCAGAAGCTTCAATACGTTATGCGGAAGAATGAGGACCGCTGG AGCAGCTGTTGCATTGCGGTTCTCATCTTTGTTCTGATTCTTCTTCTTGTTCTTTTATTGCTAGTATGA |
| Transcript | >OphauG2|4785 ATGATGTCCTCCACCACGGATGAGGACCCGTTTCTTCAGGTCCAGCAAGACGTCCTCTCTCAACTCTCTTCGACG GGCGCCCTCTTCTCATCATACCTCCGTATACGGTCTCTGTCCACCTCGGCCTCGTCCCCCGAGCTTATAGCCGCC CGCTCCGATCTGGAGAGTGCCCTCTCTTCTCTAGTCGATGATCTCGCCGATCTTGTCGCCTCGGTCCAGGCCGTC GAGTCCAACCCTGCCCAATATGGACTATCCGCCCAAGAGGTCTCGCGGCGCAGCCGTCTAGTCCAGGATGTTGGC GCCCAAGTCGATGACATGCGCGACGAGTTGACCAAAGTCCTTGATGCCTCCACCTCATCCCAGCCGCCTCAAGCA TCTTCAAGCTTGCCCGATCCAAACTCGTTTGCCGTATCGGGTGCAGACTCGGACGACCCTTATACCGAATTTGAG CAGACGCAACAGGTGGAAATGATGCGGCAGCAAGACGAGCATCTCGATGGCGTCTTCCAGACTGTCGGCAACCTC CGCCGTCAGGCAGACGACATGGGCCGCGAGCTTGAGGAGCAGCACGAGATGCTTGAGCTTGTTGACAATACGGCT GATCGTGTCGGCAGCCGCCTGCAAAACGGCATGCAGAAGCTTCAATACGTTATGCGGAAGAATGAGGACCGCTGG AGCAGCTGTTGCATTGCGGTTCTCATCTTTGTTCTGATTCTTCTTCTTGTTCTTTTATTGCTAGTATGA |
| Gene | >OphauG2|4785 ATGATGTCCTCCACCACGGATGAGGACCCGTTTCTTCAGGTCCAGCAGTAAGCCCTGCTTCTTGTGCTCCTTGTC GCGCCCTCTTGGCTTCCACTCACCCTACGCAGAGACGTCCTCTCTCAACTCTCTTCGACGGGCGCCCTCTTCTCA TCATACCTCCGTATACGGTCTCTGTCCACCTCGGCCTCGTCCCCCGAGCTTATAGCCGCCCGCTCCGATCTGGAG AGTGCCCTCTCTTCTCTAGTCGATGATCTCGCCGATCTTGTCGCCTCGGTCCAGGCCGTCGAGTCCAACCCTGCC CAATATGGACTATCCGCCCAAGAGGTCTCGCGGCGCAGCCGTCTAGTCCAGGATGTTGGCGCCCAAGTCGATGAC ATGCGCGACGAGTTGACCAAAGTCCTTGATGCCTCCACCTCATCCCAGCCGCCTCAAGCATCTTCAAGCTTGCCC GATCCAAACTCGTTTGCCGTATCGGGTGCAGACTCGGACGACCCTTATACCGAATTTGAGCAGACGCAACAGGTG GAAATGATGCGGCAGCAAGACGAGCATCTCGATGGCGTCTTCCAGACTGTCGGCAACCTCCGCCGTCAGGCAGAC GACATGGGCCGCGAGCTTGAGGAGCAGCACGAGATGCTTGAGCTTGTTGACAATACGGCTGATCGTGTCGGCAGC CGCCTGCAAAACGGCATGCAGAAGCTTCAATACGTTATGCGGAAGAATGAGGACCGCTGGAGCAGCTGTTGCATT GCGGTTCTCATCTTTGTTCTGATTCTTCTTCTTGTTCTTTTATTGCTAGTATGA |