© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|4537 |
| Gene name | |
| Location | Contig_384:2944..3448 |
| Strand | + |
| Gene length (bp) | 504 |
| Transcript length (bp) | 450 |
| Coding sequence length (bp) | 450 |
| Protein length (aa) | 150 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.7E-13 | 40 | 109 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O42847|YFH9_SCHPO | Uncharacterized RNA-binding protein C23A1.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23A1.09 PE=3 SV=1 | 33 | 148 | 2.0E-36 |
| sp|Q5D018|RBM8A_DANRE | RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1 | 33 | 120 | 7.0E-35 |
| sp|Q28BZ1|RBM8A_XENTR | RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1 | 20 | 120 | 9.0E-35 |
| sp|B5DGI7|RBM8A_SALSA | RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1 | 33 | 120 | 2.0E-34 |
| sp|Q6PH90|RB8AB_XENLA | RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-b PE=2 SV=1 | 20 | 120 | 2.0E-34 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O42847|YFH9_SCHPO | Uncharacterized RNA-binding protein C23A1.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23A1.09 PE=3 SV=1 | 33 | 148 | 2.0E-36 |
| sp|Q5D018|RBM8A_DANRE | RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1 | 33 | 120 | 7.0E-35 |
| sp|Q28BZ1|RBM8A_XENTR | RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1 | 20 | 120 | 9.0E-35 |
| sp|B5DGI7|RBM8A_SALSA | RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1 | 33 | 120 | 2.0E-34 |
| sp|Q6PH90|RB8AB_XENLA | RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-b PE=2 SV=1 | 20 | 120 | 2.0E-34 |
| sp|Q9DF42|RB8AA_XENLA | RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-a PE=2 SV=1 | 20 | 120 | 2.0E-34 |
| sp|Q9CWZ3|RBM8A_MOUSE | RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE=1 SV=3 | 33 | 116 | 8.0E-32 |
| sp|Q27W01|RBM8A_RAT | RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm8a PE=1 SV=1 | 33 | 116 | 9.0E-32 |
| sp|Q9Y5S9|RBM8A_HUMAN | RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1 SV=1 | 33 | 116 | 9.0E-32 |
| sp|Q3ZCE8|RBM8A_BOVIN | RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2 SV=2 | 33 | 116 | 9.0E-32 |
| sp|Q9V535|RBM8A_DROME | RNA-binding protein 8A OS=Drosophila melanogaster GN=tsu PE=1 SV=1 | 33 | 119 | 3.0E-30 |
| sp|Q1JQ73|ELV1A_XENLA | ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-a PE=1 SV=1 | 20 | 113 | 1.0E-08 |
| sp|Q5U259|ELV1B_XENLA | ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-b PE=1 SV=1 | 37 | 113 | 3.0E-08 |
| sp|Q6GLB5|ELAV1_XENTR | ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1 | 37 | 113 | 4.0E-08 |
| sp|Q09442|SF3B4_CAEEL | Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2 | 40 | 117 | 9.0E-08 |
| sp|Q91584|ELAV3_XENLA | ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1 | 37 | 113 | 1.0E-07 |
| sp|O09032|ELAV4_RAT | ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1 | 11 | 113 | 1.0E-07 |
| sp|Q28FX0|ELAV3_XENTR | ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1 | 37 | 113 | 1.0E-07 |
| sp|P26378|ELAV4_HUMAN | ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2 | 11 | 113 | 1.0E-07 |
| sp|Q61701|ELAV4_MOUSE | ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1 | 11 | 113 | 1.0E-07 |
| sp|Q15717|ELAV1_HUMAN | ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2 | 37 | 113 | 1.0E-07 |
| sp|P70372|ELAV1_MOUSE | ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2 | 37 | 113 | 1.0E-07 |
| sp|Q60899|ELAV2_MOUSE | ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1 | 37 | 113 | 2.0E-07 |
| sp|Q9UNP9|PPIE_HUMAN | Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1 | 39 | 114 | 2.0E-07 |
| sp|Q91903|ELAV2_XENLA | ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2 | 37 | 113 | 2.0E-07 |
| sp|A4FV72|PPIE_BOVIN | Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1 | 39 | 114 | 2.0E-07 |
| sp|Q12926|ELAV2_HUMAN | ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2 | 37 | 113 | 2.0E-07 |
| sp|Q5R723|PPIE_PONAB | Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1 | 39 | 114 | 2.0E-07 |
| sp|Q4G338|PPIE_HAECO | Peptidyl-prolyl cis-trans isomerase E OS=Haemonchus contortus PE=1 SV=1 | 40 | 119 | 2.0E-07 |
| sp|Q8CH84|ELAV2_RAT | ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=1 SV=1 | 37 | 113 | 2.0E-07 |
| sp|Q28GD4|ELAV2_XENTR | ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2 | 37 | 113 | 2.0E-07 |
| sp|Q5R9Z6|ELAV2_PONAB | ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1 | 37 | 113 | 2.0E-07 |
| sp|Q9QZH3|PPIE_MOUSE | Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=1 SV=2 | 39 | 114 | 3.0E-07 |
| sp|A4RHN3|EIF3G_MAGO7 | Eukaryotic translation initiation factor 3 subunit G OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=TIF35 PE=3 SV=1 | 40 | 114 | 7.0E-07 |
| sp|Q0U6E7|EIF3G_PHANO | Eukaryotic translation initiation factor 3 subunit G OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=TIF35 PE=3 SV=2 | 40 | 114 | 1.0E-06 |
| sp|Q2H0U6|EIF3G_CHAGB | Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=TIF35 PE=3 SV=1 | 40 | 114 | 1.0E-06 |
| sp|Q60900|ELAV3_MOUSE | ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1 | 38 | 113 | 2.0E-06 |
| sp|O14102|SAP49_SCHPO | Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap49 PE=3 SV=2 | 32 | 117 | 2.0E-06 |
| sp|Q14576|ELAV3_HUMAN | ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=2 SV=3 | 38 | 113 | 2.0E-06 |
| sp|O80678|UBA2B_ARATH | UBP1-associated protein 2B OS=Arabidopsis thaliana GN=UBA2B PE=2 SV=1 | 40 | 102 | 2.0E-06 |
| sp|B7P877|NCBP2_IXOSC | Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis GN=Cbp20 PE=3 SV=1 | 40 | 146 | 3.0E-06 |
| sp|Q9ZPX8|RS31A_ARATH | Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana GN=RS31A PE=2 SV=1 | 51 | 143 | 5.0E-06 |
| sp|Q42404|RU17_ARATH | U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1 | 39 | 132 | 5.0E-06 |
| sp|Q9C909|RBG5_ARATH | Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana GN=RBG5 PE=2 SV=1 | 21 | 96 | 5.0E-06 |
| sp|Q4P7G1|EIF3G_USTMA | Eukaryotic translation initiation factor 3 subunit G OS=Ustilago maydis (strain 521 / FGSC 9021) GN=TIF35 PE=3 SV=1 | 40 | 105 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 61 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|4537 MAETSEMDIDPPASPPPRNDSQMQTHSKATAVRSIEGWIIMVTNVHEEADEEALQDKFGEYGEIKNMHLNLDRRS GYVKGYALIEYATLEEARTAIDGAHETKLLDQTITVDFAFVRPPPGKSGRAGRTGGGRRGRSRSKSPDAKGRDD* |
| Coding | >OphauG2|4537 ATGGCTGAGACTTCAGAAATGGACATTGACCCTCCCGCATCACCGCCACCGCGCAACGACTCTCAGATGCAAACA CACTCCAAAGCAACGGCAGTACGCTCCATCGAAGGGTGGATCATCATGGTGACCAACGTCCACGAAGAAGCCGAC GAAGAGGCCTTACAGGACAAGTTTGGCGAATATGGCGAAATTAAGAATATGCATTTGAATCTGGACCGTCGCAGT GGCTACGTCAAGGGCTATGCTTTGATAGAGTACGCGACGCTGGAGGAGGCGAGGACGGCAATTGATGGCGCGCAT GAGACGAAATTGCTCGATCAGACCATTACAGTTGACTTTGCATTTGTGCGCCCGCCGCCTGGCAAGAGTGGACGT GCGGGCAGGACGGGCGGTGGGCGTAGAGGACGGAGTCGCAGCAAGAGCCCTGATGCAAAGGGACGTGACGATTGA |
| Transcript | >OphauG2|4537 ATGGCTGAGACTTCAGAAATGGACATTGACCCTCCCGCATCACCGCCACCGCGCAACGACTCTCAGATGCAAACA CACTCCAAAGCAACGGCAGTACGCTCCATCGAAGGGTGGATCATCATGGTGACCAACGTCCACGAAGAAGCCGAC GAAGAGGCCTTACAGGACAAGTTTGGCGAATATGGCGAAATTAAGAATATGCATTTGAATCTGGACCGTCGCAGT GGCTACGTCAAGGGCTATGCTTTGATAGAGTACGCGACGCTGGAGGAGGCGAGGACGGCAATTGATGGCGCGCAT GAGACGAAATTGCTCGATCAGACCATTACAGTTGACTTTGCATTTGTGCGCCCGCCGCCTGGCAAGAGTGGACGT GCGGGCAGGACGGGCGGTGGGCGTAGAGGACGGAGTCGCAGCAAGAGCCCTGATGCAAAGGGACGTGACGATTGA |
| Gene | >OphauG2|4537 ATGGCTGAGACTTCAGAAATGGACATTGACCCTCCCGCATCACCGCCACCGCGCAACGACTCTCAGATGCAAACA CACTCCAAAGCAACGGCAGTACGCTCCATCGAAGGGTGGATCATCATGGTGACCAACGTCCACGAAGAAGCCGAC GAAGAGGCCTTACAGGACAAGTTTGGCGAATATGGCGAAATTAAGAATATGCATTTGAATCTGGACCGTCGCAGT GGCTACGTCAAGGTATGCAGAAAGCAAGGGAGGAGCAAAGACTGGGTAGCTGATTGTAGAAACTAGGGCTATGCT TTGATAGAGTACGCGACGCTGGAGGAGGCGAGGACGGCAATTGATGGCGCGCATGAGACGAAATTGCTCGATCAG ACCATTACAGTTGACTTTGCATTTGTGCGCCCGCCGCCTGGCAAGAGTGGACGTGCGGGCAGGACGGGCGGTGGG CGTAGAGGACGGAGTCGCAGCAAGAGCCCTGATGCAAAGGGACGTGACGATTGA |