© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|4492 |
| Gene name | |
| Location | Contig_379:950..1592 |
| Strand | - |
| Gene length (bp) | 642 |
| Transcript length (bp) | 642 |
| Coding sequence length (bp) | 642 |
| Protein length (aa) | 214 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13087 | AAA_12 | AAA domain | 6.4E-20 | 66 | 199 |
| PF13086 | AAA_11 | AAA domain | 6.8E-10 | 9 | 53 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8R151|ZNFX1_MOUSE | NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1 PE=1 SV=3 | 2 | 192 | 1.0E-33 |
| sp|Q9P2E3|ZNFX1_HUMAN | NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1 PE=2 SV=2 | 2 | 192 | 3.0E-32 |
| sp|O74465|HRR1_SCHPO | Helicase required for RNAi-mediated heterochromatin assembly 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hrr1 PE=1 SV=2 | 2 | 197 | 4.0E-23 |
| sp|Q54I89|RENT1_DICDI | Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum GN=upf1 PE=3 SV=1 | 14 | 197 | 7.0E-11 |
| sp|Q9HEH1|RENT1_NEUCR | Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=2E4.130 PE=3 SV=1 | 14 | 191 | 1.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8R151|ZNFX1_MOUSE | NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1 PE=1 SV=3 | 2 | 192 | 1.0E-33 |
| sp|Q9P2E3|ZNFX1_HUMAN | NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1 PE=2 SV=2 | 2 | 192 | 3.0E-32 |
| sp|O74465|HRR1_SCHPO | Helicase required for RNAi-mediated heterochromatin assembly 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hrr1 PE=1 SV=2 | 2 | 197 | 4.0E-23 |
| sp|Q54I89|RENT1_DICDI | Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum GN=upf1 PE=3 SV=1 | 14 | 197 | 7.0E-11 |
| sp|Q9HEH1|RENT1_NEUCR | Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=2E4.130 PE=3 SV=1 | 14 | 191 | 1.0E-10 |
| sp|Q86YA3|ZGRF1_HUMAN | Protein ZGRF1 OS=Homo sapiens GN=ZGRF1 PE=2 SV=3 | 13 | 196 | 3.0E-10 |
| sp|O76512|RENT1_CAEEL | Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans GN=smg-2 PE=1 SV=1 | 14 | 191 | 9.0E-10 |
| sp|Q92900|RENT1_HUMAN | Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2 | 14 | 191 | 2.0E-09 |
| sp|Q9EPU0|RENT1_MOUSE | Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2 | 14 | 191 | 2.0E-09 |
| sp|B6SFA4|MAA3_ARATH | Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1 | 12 | 105 | 4.0E-09 |
| sp|Q09820|RENT1_SCHPO | ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=upf1 PE=3 SV=2 | 14 | 191 | 8.0E-09 |
| sp|Q9BYK8|HELZ2_HUMAN | Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6 | 4 | 198 | 8.0E-09 |
| sp|Q9FJR0|RENT1_ARATH | Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2 | 14 | 198 | 9.0E-09 |
| sp|Q60560|SMBP2_MESAU | DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1 SV=1 | 12 | 199 | 2.0E-08 |
| sp|E9QAM5|HELZ2_MOUSE | Helicase with zinc finger domain 2 OS=Mus musculus GN=Helz2 PE=1 SV=1 | 14 | 195 | 3.0E-08 |
| sp|Q9EQN5|SMBP2_RAT | DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1 | 12 | 199 | 5.0E-08 |
| sp|P30771|NAM7_YEAST | ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1 | 14 | 187 | 6.0E-08 |
| sp|Q0VGT4|ZGRF1_MOUSE | Protein ZGRF1 OS=Mus musculus GN=Zgrf1 PE=1 SV=2 | 13 | 196 | 6.0E-08 |
| sp|Q92355|SEN1_SCHPO | Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sen1 PE=1 SV=1 | 14 | 192 | 7.0E-08 |
| sp|Q7Z333|SETX_HUMAN | Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4 | 13 | 200 | 7.0E-08 |
| sp|O94247|HCS1_SCHPO | DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hcs1 PE=3 SV=1 | 12 | 195 | 7.0E-08 |
| sp|P40694|SMBP2_MOUSE | DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1 | 12 | 199 | 2.0E-07 |
| sp|Q9VYS3|RENT1_DROME | Regulator of nonsense transcripts 1 homolog OS=Drosophila melanogaster GN=Upf1 PE=1 SV=2 | 14 | 191 | 3.0E-07 |
| sp|A2AKX3|SETX_MOUSE | Probable helicase senataxin OS=Mus musculus GN=Setx PE=1 SV=1 | 13 | 200 | 3.0E-07 |
| sp|Q00416|SEN1_YEAST | Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN1 PE=1 SV=2 | 12 | 207 | 5.0E-07 |
| sp|Q8CFQ3|AQR_MOUSE | Intron-binding protein aquarius OS=Mus musculus GN=Aqr PE=1 SV=2 | 12 | 197 | 2.0E-06 |
| sp|O60306|AQR_HUMAN | Intron-binding protein aquarius OS=Homo sapiens GN=AQR PE=1 SV=4 | 12 | 197 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004386 | helicase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0140657 | ATP-dependent activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|4492 MYQSIIASASPDIVIVEEAGEILESHVFAALSESVKHLILIGDHKQLRPKVNSYPLTVEYGEGYDLNMSLFERLI HQGHEYTTLQEQHRSHPDISYFTRQLAYPGLKDSPKVSKRPQVKGLQKRVIFVHHRHSESHMADVSDRHDLTINT SKENVFDADMVLKTVNYLAQQGYLTKDLVVLTPYLGQLSLLRHKLSKDHDPILNDFDNAKKAR* |
| Coding | >OphauG2|4492 ATGTATCAGTCAATCATTGCTTCTGCGTCACCAGACATTGTCATTGTGGAAGAGGCAGGAGAGATTCTCGAGTCT CATGTGTTTGCAGCTCTCAGTGAGTCTGTGAAGCACCTCATCCTCATTGGCGACCACAAGCAGCTCCGGCCAAAG GTCAATAGCTATCCACTGACGGTGGAATATGGCGAGGGCTATGACTTGAACATGTCTCTCTTTGAGCGCCTTATC CACCAAGGCCACGAGTATACCACACTCCAAGAGCAGCATCGGAGCCATCCAGACATTTCCTACTTTACAAGACAA CTGGCTTATCCAGGCCTGAAGGACAGCCCAAAAGTCTCAAAACGGCCCCAAGTTAAAGGTCTACAAAAGCGTGTT ATATTTGTTCACCACAGGCACAGTGAAAGTCATATGGCAGACGTTTCCGACAGGCACGATCTTACAATCAACACG AGCAAGGAAAATGTCTTTGACGCAGATATGGTGCTCAAGACAGTCAACTATCTTGCACAGCAAGGTTATTTAACG AAAGACTTGGTGGTCCTCACCCCATATCTGGGACAGCTATCACTGTTGCGTCATAAGCTAAGCAAGGACCATGAC CCCATTCTTAACGACTTTGATAACGCGAAGAAAGCGAGATAG |
| Transcript | >OphauG2|4492 ATGTATCAGTCAATCATTGCTTCTGCGTCACCAGACATTGTCATTGTGGAAGAGGCAGGAGAGATTCTCGAGTCT CATGTGTTTGCAGCTCTCAGTGAGTCTGTGAAGCACCTCATCCTCATTGGCGACCACAAGCAGCTCCGGCCAAAG GTCAATAGCTATCCACTGACGGTGGAATATGGCGAGGGCTATGACTTGAACATGTCTCTCTTTGAGCGCCTTATC CACCAAGGCCACGAGTATACCACACTCCAAGAGCAGCATCGGAGCCATCCAGACATTTCCTACTTTACAAGACAA CTGGCTTATCCAGGCCTGAAGGACAGCCCAAAAGTCTCAAAACGGCCCCAAGTTAAAGGTCTACAAAAGCGTGTT ATATTTGTTCACCACAGGCACAGTGAAAGTCATATGGCAGACGTTTCCGACAGGCACGATCTTACAATCAACACG AGCAAGGAAAATGTCTTTGACGCAGATATGGTGCTCAAGACAGTCAACTATCTTGCACAGCAAGGTTATTTAACG AAAGACTTGGTGGTCCTCACCCCATATCTGGGACAGCTATCACTGTTGCGTCATAAGCTAAGCAAGGACCATGAC CCCATTCTTAACGACTTTGATAACGCGAAGAAAGCGAGATAG |
| Gene | >OphauG2|4492 ATGTATCAGTCAATCATTGCTTCTGCGTCACCAGACATTGTCATTGTGGAAGAGGCAGGAGAGATTCTCGAGTCT CATGTGTTTGCAGCTCTCAGTGAGTCTGTGAAGCACCTCATCCTCATTGGCGACCACAAGCAGCTCCGGCCAAAG GTCAATAGCTATCCACTGACGGTGGAATATGGCGAGGGCTATGACTTGAACATGTCTCTCTTTGAGCGCCTTATC CACCAAGGCCACGAGTATACCACACTCCAAGAGCAGCATCGGAGCCATCCAGACATTTCCTACTTTACAAGACAA CTGGCTTATCCAGGCCTGAAGGACAGCCCAAAAGTCTCAAAACGGCCCCAAGTTAAAGGTCTACAAAAGCGTGTT ATATTTGTTCACCACAGGCACAGTGAAAGTCATATGGCAGACGTTTCCGACAGGCACGATCTTACAATCAACACG AGCAAGGAAAATGTCTTTGACGCAGATATGGTGCTCAAGACAGTCAACTATCTTGCACAGCAAGGTTATTTAACG AAAGACTTGGTGGTCCTCACCCCATATCTGGGACAGCTATCACTGTTGCGTCATAAGCTAAGCAAGGACCATGAC CCCATTCTTAACGACTTTGATAACGCGAAGAAAGCGAGATAG |