© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|4472 |
| Gene name | |
| Location | Contig_375:15236..15805 |
| Strand | + |
| Gene length (bp) | 569 |
| Transcript length (bp) | 510 |
| Coding sequence length (bp) | 510 |
| Protein length (aa) | 170 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03870 | RNA_pol_Rpb8 | RNA polymerase Rpb8 | 4.1E-43 | 30 | 169 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P20436|RPAB3_YEAST | DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB8 PE=1 SV=1 | 27 | 169 | 6.0E-24 |
| sp|Q92399|RPAB3_SCHPO | DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb8 PE=1 SV=2 | 24 | 169 | 8.0E-22 |
| sp|Q923G2|RPAB3_MOUSE | DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Mus musculus GN=Polr2h PE=1 SV=3 | 28 | 169 | 1.0E-21 |
| sp|P52434|RPAB3_HUMAN | DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens GN=POLR2H PE=1 SV=4 | 28 | 169 | 1.0E-21 |
| sp|O81097|RPB8A_ARATH | DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana GN=NRPB8A PE=1 SV=1 | 23 | 169 | 5.0E-19 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P20436|RPAB3_YEAST | DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB8 PE=1 SV=1 | 27 | 169 | 6.0E-24 |
| sp|Q92399|RPAB3_SCHPO | DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb8 PE=1 SV=2 | 24 | 169 | 8.0E-22 |
| sp|Q923G2|RPAB3_MOUSE | DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Mus musculus GN=Polr2h PE=1 SV=3 | 28 | 169 | 1.0E-21 |
| sp|P52434|RPAB3_HUMAN | DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens GN=POLR2H PE=1 SV=4 | 28 | 169 | 1.0E-21 |
| sp|O81097|RPB8A_ARATH | DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana GN=NRPB8A PE=1 SV=1 | 23 | 169 | 5.0E-19 |
| sp|Q54YW8|RPAB3_DICDI | DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium discoideum GN=polr2h PE=3 SV=1 | 26 | 169 | 8.0E-19 |
| sp|A8XT81|RPAB3_CAEBR | Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis briggsae GN=rpb-8 PE=3 SV=1 | 27 | 169 | 1.0E-18 |
| sp|Q19826|RPAB3_CAEEL | Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis elegans GN=rpb-8 PE=1 SV=1 | 28 | 169 | 3.0E-18 |
| sp|Q9M1A8|RPB8B_ARATH | DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana GN=NRPB8B PE=1 SV=1 | 23 | 169 | 3.0E-18 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | Yes |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0097659 | nucleic acid-templated transcription | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|4472 MSTASSGTAGAGTSATGTGNSTGGDATLFEESFTITEYDQAKYDRVARISCTSSDARTFMTLDINTELLFCDKTD SLHVVLTTTLSPDGTKDDDKGWRDVGKAGGDGPATIADLFDYVCYGKVYKFDETYDGNTINAYVSFGGLLMSLQG PVKKLIPLRVDNVYLLIKK* |
| Coding | >OphauG2|4472 ATGTCGACTGCCAGCAGCGGCACCGCTGGTGCAGGTACAAGCGCCACTGGTACTGGCAACTCTACTGGCGGCGAC GCGACCCTCTTTGAGGAAAGCTTTACGATAACGGAGTATGACCAGGCAAAATACGACCGCGTGGCTCGAATCTCG TGTACCTCGAGTGACGCACGCACCTTTATGACTCTTGACATCAACACCGAGCTCCTCTTTTGCGACAAGACAGAT TCGCTTCATGTCGTCCTTACCACAACACTTTCACCCGACGGCACAAAAGACGACGATAAAGGCTGGCGGGATGTG GGCAAGGCGGGGGGTGACGGGCCTGCCACCATAGCCGACCTCTTTGATTATGTCTGCTACGGCAAGGTTTACAAG TTTGATGAGACATATGATGGCAACACAATCAACGCATATGTTTCATTTGGTGGCCTACTTATGTCGCTTCAGGGC CCGGTGAAGAAGCTTATACCGCTGCGCGTCGACAACGTCTATCTATTGATCAAGAAATAG |
| Transcript | >OphauG2|4472 ATGTCGACTGCCAGCAGCGGCACCGCTGGTGCAGGTACAAGCGCCACTGGTACTGGCAACTCTACTGGCGGCGAC GCGACCCTCTTTGAGGAAAGCTTTACGATAACGGAGTATGACCAGGCAAAATACGACCGCGTGGCTCGAATCTCG TGTACCTCGAGTGACGCACGCACCTTTATGACTCTTGACATCAACACCGAGCTCCTCTTTTGCGACAAGACAGAT TCGCTTCATGTCGTCCTTACCACAACACTTTCACCCGACGGCACAAAAGACGACGATAAAGGCTGGCGGGATGTG GGCAAGGCGGGGGGTGACGGGCCTGCCACCATAGCCGACCTCTTTGATTATGTCTGCTACGGCAAGGTTTACAAG TTTGATGAGACATATGATGGCAACACAATCAACGCATATGTTTCATTTGGTGGCCTACTTATGTCGCTTCAGGGC CCGGTGAAGAAGCTTATACCGCTGCGCGTCGACAACGTCTATCTATTGATCAAGAAATAG |
| Gene | >OphauG2|4472 ATGTCGACTGCCAGCAGCGGCACCGCTGGTGCAGGTACAAGCGCCACTGGTACTGGCAACTCTACTGGCGGCGAC GCGACCCTCTTTGAGGAAAGCTTTACGATAACGGAGTATGACCAGGCAAAATACGACCGCGTGGCTCGAATCTCG TGTACCTCGAGTGACGCACGCACCTTTATGACTCTTGACATCAACACCGAGCTCCTCTTTTGCGACAAGACAGAT TCGCTTCATGTCGTCCTTACCACAACACTTTCACCCGACGGCACAAAAGACGACGATAAAGGCTGGCGGGATGTG GGCAAGGCGGGGGGTGACGGGCCTGCCACCATAGCCGACCTCTTTGATTATGTCTGCTACGGCAAGGTTTACAAG TTTGATGAGACATATGATGGCAACACAATGTGGGTTATACCAATGCTAAACCGCATCAACTCTCCCGATTGACTT ACGCCTTTGACAGCAACGCATATGTTTCATTTGGTGGCCTACTTATGTCGCTTCAGGGCCCGGTGAAGAAGCTTA TACCGCTGCGCGTCGACAACGTCTATCTATTGATCAAGAAATAG |