© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|4424 |
| Gene name | |
| Location | Contig_37:25144..26535 |
| Strand | + |
| Gene length (bp) | 1391 |
| Transcript length (bp) | 1041 |
| Coding sequence length (bp) | 1041 |
| Protein length (aa) | 347 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02453 | Reticulon | Reticulon | 5.5E-32 | 79 | 236 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53694|RTN1_SCHPO | Reticulon-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rtn1 PE=1 SV=1 | 81 | 236 | 4.0E-12 |
| sp|Q04947|RTN1_YEAST | Reticulon-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTN1 PE=1 SV=1 | 79 | 309 | 2.0E-10 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 87 | 109 | 22 |
| 2 | 178 | 200 | 22 |
| 3 | 204 | 223 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|4424 MADSTDNSLSANAGSLLESTKTNAAAAFDSVTNGPVAQNVKDESAKTSAELSNLASSRKTPSQPAVTGQPLTHYH SFFSELLSWNNPRASALAYVSIVSFILAARYLDVIRWALKMSWMALAVTSSAEAAGKLVLNHGIATQMRPRRYYT VSRATLDKIIGDVNELVNFFIIEAQRILFAENVGASVAAFVAAFVLYHLAKLVPYWGLAIIATTVTFFVPLVYKS NQEVIDSQIKSASEMIGAQTAQFRNVAQKQANHLTTMSKQYAGDYTGKVQEMLRGRGASPAAASTKPRLPDAQPE FPSPPQDEPQKPTAPVSQSVVLPASDAEGEPLDKAAVVEKEPLLAS* |
| Coding | >OphauG2|4424 ATGGCTGATAGCACCGACAATTCGCTTTCAGCCAATGCTGGTTCGCTCCTCGAGTCAACAAAGACGAACGCTGCT GCGGCTTTTGATTCCGTTACCAATGGTCCTGTCGCACAAAATGTCAAGGATGAATCTGCCAAAACGTCGGCTGAG CTGTCCAATCTCGCATCTTCTCGCAAAACACCCTCGCAGCCAGCAGTGACGGGCCAGCCCCTGACGCATTATCAC TCATTCTTTTCGGAGCTGTTATCATGGAACAATCCTCGAGCCTCTGCTCTGGCCTATGTGTCAATCGTCTCATTC ATCTTGGCAGCCCGATACTTGGACGTTATCCGCTGGGCTCTCAAAATGTCATGGATGGCTCTTGCAGTGACTAGC AGCGCCGAGGCGGCGGGCAAACTCGTCTTAAATCACGGCATTGCAACGCAAATGCGCCCTCGTCGATATTACACT GTGTCGAGAGCCACCCTGGACAAGATTATTGGCGATGTGAACGAGCTCGTCAACTTTTTTATAATTGAAGCGCAG CGCATCTTGTTTGCTGAAAACGTTGGTGCTTCTGTTGCGGCCTTTGTTGCTGCCTTTGTTTTGTATCATCTTGCC AAGCTTGTCCCGTACTGGGGTCTGGCCATTATTGCCACTACTGTCACCTTTTTTGTTCCTCTTGTCTACAAATCC AACCAAGAGGTCATTGACAGCCAAATCAAGAGTGCCTCTGAAATGATTGGCGCTCAGACGGCACAGTTCCGCAAT GTGGCACAAAAACAAGCCAACCACCTGACGACGATGAGCAAACAGTACGCTGGCGACTACACCGGCAAGGTTCAG GAAATGCTACGCGGTCGTGGCGCCTCTCCAGCAGCGGCTTCTACAAAGCCACGTTTGCCTGATGCACAGCCCGAG TTCCCGTCTCCTCCCCAAGACGAACCACAAAAGCCTACTGCCCCCGTGTCGCAAAGCGTTGTCTTGCCTGCGTCG GACGCCGAGGGCGAGCCTTTGGACAAGGCTGCTGTGGTGGAGAAGGAGCCCCTGTTGGCCTCTTAG |
| Transcript | >OphauG2|4424 ATGGCTGATAGCACCGACAATTCGCTTTCAGCCAATGCTGGTTCGCTCCTCGAGTCAACAAAGACGAACGCTGCT GCGGCTTTTGATTCCGTTACCAATGGTCCTGTCGCACAAAATGTCAAGGATGAATCTGCCAAAACGTCGGCTGAG CTGTCCAATCTCGCATCTTCTCGCAAAACACCCTCGCAGCCAGCAGTGACGGGCCAGCCCCTGACGCATTATCAC TCATTCTTTTCGGAGCTGTTATCATGGAACAATCCTCGAGCCTCTGCTCTGGCCTATGTGTCAATCGTCTCATTC ATCTTGGCAGCCCGATACTTGGACGTTATCCGCTGGGCTCTCAAAATGTCATGGATGGCTCTTGCAGTGACTAGC AGCGCCGAGGCGGCGGGCAAACTCGTCTTAAATCACGGCATTGCAACGCAAATGCGCCCTCGTCGATATTACACT GTGTCGAGAGCCACCCTGGACAAGATTATTGGCGATGTGAACGAGCTCGTCAACTTTTTTATAATTGAAGCGCAG CGCATCTTGTTTGCTGAAAACGTTGGTGCTTCTGTTGCGGCCTTTGTTGCTGCCTTTGTTTTGTATCATCTTGCC AAGCTTGTCCCGTACTGGGGTCTGGCCATTATTGCCACTACTGTCACCTTTTTTGTTCCTCTTGTCTACAAATCC AACCAAGAGGTCATTGACAGCCAAATCAAGAGTGCCTCTGAAATGATTGGCGCTCAGACGGCACAGTTCCGCAAT GTGGCACAAAAACAAGCCAACCACCTGACGACGATGAGCAAACAGTACGCTGGCGACTACACCGGCAAGGTTCAG GAAATGCTACGCGGTCGTGGCGCCTCTCCAGCAGCGGCTTCTACAAAGCCACGTTTGCCTGATGCACAGCCCGAG TTCCCGTCTCCTCCCCAAGACGAACCACAAAAGCCTACTGCCCCCGTGTCGCAAAGCGTTGTCTTGCCTGCGTCG GACGCCGAGGGCGAGCCTTTGGACAAGGCTGCTGTGGTGGAGAAGGAGCCCCTGTTGGCCTCTTAG |
| Gene | >OphauG2|4424 ATGGCTGATAGCACCGACAATTCGCTTTCAGCCAATGCTGGTTCGCTCCTCGAGTCAACAAAGACGAGTAAGGTA AGCATCCCTCTTCTCTGCCCAAGAAAAAAAATGGTGTGCCCATGTTGCCATCTTGTCCTATCCATGATGAGCTCG AGACGCCCAGTCTGCTAACCATGGCCAGTCTTGGCATGCGCTGTGGCGCCACATGGCTCCTTTAAACCAAGCGAC TTGAAACTGACGCTTATACTCCCAAGACGCTGCTGCGGCTTTTGATTCCGTTACCAATGGTGACGTGCTCGTCTC CCAACAGCACATGGTTTTTTGCTCACACCCTCTTTCAGGTCCTGTCGCACAAAATGTCAAGGATGAATCTGCCAA AACGTCGGCTGAGCTGTCCAATCTCGCATCTTCTCGCAAAACACCCTCGCAGCCAGCAGTGACGGGCCAGCCCCT GACGCATTATCACTCATTCTTTTCGGAGCTGTTATCATGGAACAATCCTCGTGAGCATATTGGCCTCTAGTCAGT CTTGTTTTGATAGCCGTGCTGACAAGGCCCAAGGAGCCTCTGCTCTGGCCTATGTGTCAATCGTCTCATTCATCT TGGCAGCCCGATACTTGGACGTTATCCGCTGGGCTCTCAAAATGTCATGGATGGCTCTTGCAGTGACTAGCAGCG CCGAGGCGGCGGGCAAACTCGTCTTAAATCACGGCATTGCAACGCAAATGCGCCCTCGTCGATATTACACTGTGT CGAGAGCCACCCTGGACAAGATTATTGGCGATGTGAACGAGCTCGTCAACTTTTTTATAATTGAAGCGCAGCGCA TCTTGTTTGCTGAAAACGTTGGTGCTTCTGTTGCGGTGCGTTGACTCCATGTCTTGACATTTGGGAAACACAGGA CTGATTACCTGTAGGCCTTTGTTGCTGCCTTTGTTTTGTATCATCTTGCCAAGCTTGTCCCGTACTGGGGTCTGG CCATTATTGCCACTACTGTCACCTTTTTTGTTCCTCTTGTCTACAAATCCAACCAAGAGGTCATTGACAGCCAAA TCAAGAGTGCCTCTGAAATGATTGGCGCTCAGACGGCACAGTTCCGCAATGTGGCACAAAAACAAGCCAACCACC TGACGACGATGAGCAAACAGTACGCTGGCGACTACACCGGCAAGGTTCAGGAAATGCTACGCGGTCGTGGCGCCT CTCCAGCAGCGGCTTCTACAAAGCCACGTTTGCCTGATGCACAGCCCGAGTTCCCGTCTCCTCCCCAAGACGAAC CACAAAAGCCTACTGCCCCCGTGTCGCAAAGCGTTGTCTTGCCTGCGTCGGACGCCGAGGGCGAGCCTTTGGACA AGGCTGCTGTGGTGGAGAAGGAGCCCCTGTTGGCCTCTTAG |