© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|4384 |
| Gene name | |
| Location | Contig_364:4248..5671 |
| Strand | - |
| Gene length (bp) | 1423 |
| Transcript length (bp) | 1272 |
| Coding sequence length (bp) | 1272 |
| Protein length (aa) | 424 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06728 | PIG-U | GPI transamidase subunit PIG-U | 3.4E-121 | 15 | 388 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9H490|PIGU_HUMAN | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Homo sapiens GN=PIGU PE=1 SV=3 | 28 | 408 | 4.0E-74 |
| sp|Q8K358|PIGU_MOUSE | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Mus musculus GN=Pigu PE=1 SV=4 | 28 | 408 | 7.0E-74 |
| sp|Q8CHJ1|PIGU_RAT | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Rattus norvegicus GN=Pigu PE=1 SV=3 | 28 | 408 | 4.0E-73 |
| sp|Q8CHJ0|PIGU_CRIGR | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Cricetulus griseus GN=PIGU PE=1 SV=3 | 28 | 408 | 1.0E-72 |
| sp|P41733|CDC91_YEAST | GPI transamidase component GAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAB1 PE=1 SV=1 | 11 | 423 | 4.0E-58 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9H490|PIGU_HUMAN | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Homo sapiens GN=PIGU PE=1 SV=3 | 28 | 408 | 4.0E-74 |
| sp|Q8K358|PIGU_MOUSE | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Mus musculus GN=Pigu PE=1 SV=4 | 28 | 408 | 7.0E-74 |
| sp|Q8CHJ1|PIGU_RAT | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Rattus norvegicus GN=Pigu PE=1 SV=3 | 28 | 408 | 4.0E-73 |
| sp|Q8CHJ0|PIGU_CRIGR | Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Cricetulus griseus GN=PIGU PE=1 SV=3 | 28 | 408 | 1.0E-72 |
| sp|P41733|CDC91_YEAST | GPI transamidase component GAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAB1 PE=1 SV=1 | 11 | 423 | 4.0E-58 |
| sp|O13883|PIGU_SCHPO | GPI transamidase component GAB1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1952.01 PE=3 SV=2 | 36 | 423 | 4.0E-55 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 34 | 22 |
| 2 | 87 | 109 | 22 |
| 3 | 130 | 152 | 22 |
| 4 | 180 | 202 | 22 |
| 5 | 223 | 245 | 22 |
| 6 | 278 | 300 | 22 |
| 7 | 307 | 326 | 19 |
| 8 | 348 | 370 | 22 |
| 9 | 377 | 396 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|4384 MSSLRRDRAGVYVGAALLRLVLTLAFPGLPNLLTGRVEISTPVTSFKRLQEGLFLYNHNVSPYDGGIFHQAPLLL PLFSLLPDVRQWPIFTSLLYILVDIFTADALANIADSGEAGQSKLFVSARRAKRASGSIAAATFLFNPFTVATCI GRSTSVFTSCAILHAVSRAIHGYSLSAMVAISFASYLSMYPLLLLPPLILLAYDRQPAHRSTSRVLRFAARCLGV TAGCLALLLAMSYFLAGGSFDFLARTYGIQLTLSDLTPNVGLWWYFFIEMFDPFRAFFLAVFWLHLASYVSGLSI RLRSQPLAVITILLGIFAIFKPYPSISDTSLFLAMMPLYRHVYPLMRYTFIACATILYSSFLGPAFYYLWIYAGS GNANFFYAITLVWSLGQSLLVSDLTFAVLRDEWEVQRPEMVGKEVKQI* |
| Coding | >OphauG2|4384 ATGTCTTCGCTGCGACGAGACCGAGCCGGCGTCTACGTCGGCGCCGCTCTTTTGCGACTTGTCCTTACTCTTGCC TTTCCAGGCCTGCCGAATCTGTTGACAGGACGCGTCGAAATTTCCACTCCGGTGACGAGCTTCAAACGACTCCAA GAAGGCCTATTCCTCTACAACCACAATGTGTCGCCATACGACGGTGGCATCTTCCACCAGGCTCCATTGCTTCTC CCTCTCTTTTCCTTGCTTCCTGATGTTAGGCAATGGCCCATATTTACTTCGCTACTCTATATCCTCGTCGACATA TTTACTGCCGATGCCCTAGCCAATATCGCCGACTCGGGAGAGGCTGGCCAGTCCAAGCTATTTGTCTCTGCACGG CGAGCTAAGCGTGCCTCAGGGTCTATAGCTGCGGCAACCTTTCTCTTCAACCCCTTTACCGTGGCGACTTGCATT GGCCGTTCAACCAGCGTCTTCACGTCATGCGCAATCCTCCACGCCGTCTCTCGCGCCATCCACGGCTACTCGTTG AGCGCAATGGTGGCCATTTCGTTCGCCTCGTATCTGTCCATGTACCCCTTGCTGCTGCTACCGCCCCTTATTCTG CTGGCCTACGACCGTCAGCCCGCCCACCGATCCACAAGCCGCGTCCTCCGCTTCGCAGCGAGGTGCCTTGGGGTA ACAGCTGGCTGTCTCGCCTTACTGCTCGCCATGTCCTACTTCCTGGCCGGCGGCTCGTTTGATTTCCTTGCCCGC ACCTACGGCATCCAGCTGACGCTTTCGGACCTGACACCCAATGTTGGTCTGTGGTGGTACTTTTTCATTGAAATG TTCGACCCCTTCCGCGCCTTCTTCCTTGCTGTCTTTTGGCTGCACCTGGCATCCTATGTCAGCGGCCTCTCCATT CGCCTCCGCTCGCAGCCTCTTGCCGTCATCACTATTCTTCTGGGCATCTTTGCCATTTTCAAGCCATATCCCTCC ATCTCCGACACAAGTCTCTTTCTCGCTATGATGCCTCTATATCGGCACGTCTATCCGCTCATGCGCTACACATTT ATTGCATGTGCAACGATTCTCTACTCGTCTTTTCTCGGCCCTGCCTTTTACTACCTGTGGATCTATGCGGGCAGC GGCAATGCAAACTTCTTCTACGCCATCACTCTTGTCTGGAGCTTGGGCCAAAGTCTTCTCGTCTCAGATTTAACG TTTGCCGTTTTGCGCGACGAGTGGGAAGTACAGCGGCCAGAGATGGTTGGCAAGGAGGTTAAGCAAATCTGA |
| Transcript | >OphauG2|4384 ATGTCTTCGCTGCGACGAGACCGAGCCGGCGTCTACGTCGGCGCCGCTCTTTTGCGACTTGTCCTTACTCTTGCC TTTCCAGGCCTGCCGAATCTGTTGACAGGACGCGTCGAAATTTCCACTCCGGTGACGAGCTTCAAACGACTCCAA GAAGGCCTATTCCTCTACAACCACAATGTGTCGCCATACGACGGTGGCATCTTCCACCAGGCTCCATTGCTTCTC CCTCTCTTTTCCTTGCTTCCTGATGTTAGGCAATGGCCCATATTTACTTCGCTACTCTATATCCTCGTCGACATA TTTACTGCCGATGCCCTAGCCAATATCGCCGACTCGGGAGAGGCTGGCCAGTCCAAGCTATTTGTCTCTGCACGG CGAGCTAAGCGTGCCTCAGGGTCTATAGCTGCGGCAACCTTTCTCTTCAACCCCTTTACCGTGGCGACTTGCATT GGCCGTTCAACCAGCGTCTTCACGTCATGCGCAATCCTCCACGCCGTCTCTCGCGCCATCCACGGCTACTCGTTG AGCGCAATGGTGGCCATTTCGTTCGCCTCGTATCTGTCCATGTACCCCTTGCTGCTGCTACCGCCCCTTATTCTG CTGGCCTACGACCGTCAGCCCGCCCACCGATCCACAAGCCGCGTCCTCCGCTTCGCAGCGAGGTGCCTTGGGGTA ACAGCTGGCTGTCTCGCCTTACTGCTCGCCATGTCCTACTTCCTGGCCGGCGGCTCGTTTGATTTCCTTGCCCGC ACCTACGGCATCCAGCTGACGCTTTCGGACCTGACACCCAATGTTGGTCTGTGGTGGTACTTTTTCATTGAAATG TTCGACCCCTTCCGCGCCTTCTTCCTTGCTGTCTTTTGGCTGCACCTGGCATCCTATGTCAGCGGCCTCTCCATT CGCCTCCGCTCGCAGCCTCTTGCCGTCATCACTATTCTTCTGGGCATCTTTGCCATTTTCAAGCCATATCCCTCC ATCTCCGACACAAGTCTCTTTCTCGCTATGATGCCTCTATATCGGCACGTCTATCCGCTCATGCGCTACACATTT ATTGCATGTGCAACGATTCTCTACTCGTCTTTTCTCGGCCCTGCCTTTTACTACCTGTGGATCTATGCGGGCAGC GGCAATGCAAACTTCTTCTACGCCATCACTCTTGTCTGGAGCTTGGGCCAAAGTCTTCTCGTCTCAGATTTAACG TTTGCCGTTTTGCGCGACGAGTGGGAAGTACAGCGGCCAGAGATGGTTGGCAAGGAGGTTAAGCAAATCTGA |
| Gene | >OphauG2|4384 ATGTCTTCGCTGCGACGAGACCGAGCCGGCGTCTACGTCGGCGCCGCTCTTTTGCGACTTGTCCTTACTCTTGCC TTTCCAGGCCTGCCGAATCTGTTGACAGGACGCGTCGAAATTTCCACTCCGGTGACGAGCTTCAAACGACGTACG TCTGATGCTACACGGCGCGTACAGCGCTCTTCTATTTCGCGGCATCTTGTGCATACAGGGCTCTTATTAACGGCA ATGATGTAGTCCAAGAAGGCCTATTCCTCTACAACCACAATGTGTCGCCATACGACGGTGGCATCTTCCACCAGG CTCCATTGCTTCTCCCTCTCTTTTCCTTGCTTCCTGATGTTAGGCAATGGCCCATATTTACTTCGCTACTCTATA TCCTCGTCGACATATTTACTGCCGATGCCCTAGCCAATATCGCCGACTCGGGAGAGGCTGGCCAGTCCAAGCTAT TTGTCTCTGCACGGCGAGCTAAGCGTGCCTCAGGGTCTATAGCTGCGGCAACGTGGGTCTAATCGTCGGCATACA GTTGCTGGCCTTGACGGGAAGCTAATGGTCAATCCTTAGCTTTCTCTTCAACCCCTTTACCGTGGCGACTTGCAT TGGCCGTTCAACCAGCGTCTTCACGTCATGCGCAATCCTCCACGCCGTCTCTCGCGCCATCCACGGCTACTCGTT GAGCGCAATGGTGGCCATTTCGTTCGCCTCGTATCTGTCCATGTACCCCTTGCTGCTGCTACCGCCCCTTATTCT GCTGGCCTACGACCGTCAGCCCGCCCACCGATCCACAAGCCGCGTCCTCCGCTTCGCAGCGAGGTGCCTTGGGGT AACAGCTGGCTGTCTCGCCTTACTGCTCGCCATGTCCTACTTCCTGGCCGGCGGCTCGTTTGATTTCCTTGCCCG CACCTACGGCATCCAGCTGACGCTTTCGGACCTGACACCCAATGTTGGTCTGTGGTGGTACTTTTTCATTGAAAT GTTCGACCCCTTCCGCGCCTTCTTCCTTGCTGTCTTTTGGCTGCACCTGGCATCCTATGTCAGCGGCCTCTCCAT TCGCCTCCGCTCGCAGCCTCTTGCCGTCATCACTATTCTTCTGGGCATCTTTGCCATTTTCAAGCCATATCCCTC CATCTCCGACACAAGTCTCTTTCTCGCTATGATGCCTCTATATCGGCACGTCTATCCGCTCATGCGCTACACATT TATTGCATGTGCAACGATTCTCTACTCGTCTTTTCTCGGCCCTGCCTTTTACTACCTGTGGATCTATGCGGGCAG CGGCAATGCAAACTTCTTCTACGCCATCACTCTTGTCTGGAGCTTGGGCCAAAGTCTTCTCGTCTCAGATTTAAC GTTTGCCGTTTTGCGCGACGAGTGGGAAGTACAGCGGCCAGAGATGGTTGGCAAGGAGGTTAAGCAAATCTGA |