© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|4370 |
| Gene name | |
| Location | Contig_362:2414..4262 |
| Strand | - |
| Gene length (bp) | 1848 |
| Transcript length (bp) | 1848 |
| Coding sequence length (bp) | 1848 |
| Protein length (aa) | 616 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04410 | Gar1 | Gar1/Naf1 RNA binding region | 1.6E-22 | 231 | 323 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14360|NAF1_SCHPO | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=naf1 PE=1 SV=1 | 208 | 359 | 6.0E-24 |
| sp|Q96HR8|NAF1_HUMAN | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Homo sapiens GN=NAF1 PE=1 SV=2 | 207 | 382 | 1.0E-18 |
| sp|A6ZRW0|NAF1_YEAS7 | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Saccharomyces cerevisiae (strain YJM789) GN=NAF1 PE=3 SV=1 | 182 | 361 | 2.0E-18 |
| sp|P53919|NAF1_YEAST | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAF1 PE=1 SV=1 | 182 | 361 | 2.0E-18 |
| sp|Q3UMQ8|NAF1_MOUSE | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Mus musculus GN=Naf1 PE=1 SV=2 | 207 | 424 | 2.0E-18 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14360|NAF1_SCHPO | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=naf1 PE=1 SV=1 | 208 | 359 | 6.0E-24 |
| sp|Q96HR8|NAF1_HUMAN | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Homo sapiens GN=NAF1 PE=1 SV=2 | 207 | 382 | 1.0E-18 |
| sp|A6ZRW0|NAF1_YEAS7 | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Saccharomyces cerevisiae (strain YJM789) GN=NAF1 PE=3 SV=1 | 182 | 361 | 2.0E-18 |
| sp|P53919|NAF1_YEAST | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAF1 PE=1 SV=1 | 182 | 361 | 2.0E-18 |
| sp|Q3UMQ8|NAF1_MOUSE | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Mus musculus GN=Naf1 PE=1 SV=2 | 207 | 424 | 2.0E-18 |
| sp|Q52KK4|NAF1_RAT | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Rattus norvegicus GN=Naf1 PE=1 SV=1 | 207 | 376 | 2.0E-17 |
| sp|Q9VJ62|NAF1_DROME | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Drosophila melanogaster GN=CG10341 PE=1 SV=2 | 206 | 344 | 8.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0042254 | ribosome biogenesis | Yes |
| GO:0001522 | pseudouridine synthesis | Yes |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0009451 | RNA modification | No |
| GO:0009987 | cellular process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0022613 | ribonucleoprotein complex biogenesis | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0044085 | cellular component biogenesis | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| Orthofinder run ID | 4 |
| Orthogroup | 5891 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|4370 MIDHQPPSPASITFALEAALGGLPDAISTQDQAKGLPEQTQESLESHPSGEQETAEHHSEPPSEPQQVSQHMYVE ALAPVQHVEPETCCEALESQTVAAVPVAAVPVAADTLSSELVDQADAQPVLQEAMEARSDRGENAEWEIDSSPYE SSCDSSSSDSSDSENEGYQLLGLEETARLLMEAEAGSDDETDPSKGGKLPTVRAARVRTKNEVAEAPPPRPDVVI TPEMGIEELGVVVHIVEGVVVIKAVTPGEYQVLDTGSVLCTANRTVVGVVAETIGTVIQPMYTVRFAAESSDNDD DLVSALGLQVGTKLFYPVDLASYVFTQPLRNVKGSDASNMHDEEVGDDDLDFSDDEKEAEYKRSVKQQRSKNKSA KPDASRPPHPLRQQTSADAGLNYDDADVKASNDADEDGPYRPLARPPGFGTQSPSADFVEPAPRFGAHRGSQRRD NQRGRGAKGRAVNRGSSSSRNASSNPLPREHVAPSLQSLQHPPQPQHALPNYPFLPAYSAQQAAATPLPQPLPPQ LHGASLPNLGDIFIPPPRHPSLPHGAPVPPPPPLLPRQMGWAAPTQTPAPPSNGGTFLNPSLIAALMSQIQAGTG QQWSPQQQPPPGYGR* |
| Coding | >OphauG2|4370 ATGATTGACCACCAGCCCCCGAGCCCTGCCTCGATAACCTTTGCCTTGGAAGCGGCACTGGGAGGATTACCCGAT GCCATCTCGACACAAGATCAGGCCAAGGGGCTTCCAGAACAGACACAAGAATCGCTCGAGTCACATCCGTCAGGC GAGCAAGAGACAGCAGAGCACCATTCAGAGCCGCCATCAGAGCCACAACAAGTCTCGCAGCACATGTACGTTGAG GCCCTGGCCCCAGTGCAACATGTTGAACCAGAAACGTGCTGCGAGGCTCTAGAATCTCAAACAGTTGCAGCTGTC CCAGTTGCAGCTGTCCCAGTTGCAGCAGATACGCTGTCATCAGAGCTTGTAGACCAGGCAGACGCCCAGCCAGTA TTACAAGAGGCCATGGAGGCTCGAAGCGACAGGGGCGAAAATGCAGAGTGGGAAATAGACTCATCGCCATACGAA TCTTCATGCGACTCGAGTAGCTCCGACTCGTCAGACTCAGAGAATGAAGGCTATCAGCTCCTCGGCCTTGAAGAA ACAGCCCGCCTGCTCATGGAGGCCGAGGCCGGCTCCGACGACGAGACGGACCCGTCCAAGGGCGGCAAACTCCCC ACTGTCCGCGCCGCCCGAGTGCGCACCAAGAACGAAGTTGCTGAAGCCCCCCCACCGCGCCCCGACGTGGTCATC ACGCCCGAGATGGGCATTGAGGAGCTCGGTGTCGTGGTGCACATTGTGGAAGGCGTCGTGGTCATCAAGGCCGTC ACACCAGGAGAGTACCAGGTGCTCGACACAGGCTCCGTCCTCTGCACCGCCAACCGCACCGTGGTGGGCGTCGTG GCGGAAACGATTGGCACCGTGATCCAGCCCATGTACACGGTCCGCTTTGCTGCTGAGAGCAGCGACAATGACGAC GACTTGGTGTCGGCGCTCGGCCTGCAAGTCGGCACAAAGCTCTTTTACCCCGTCGACCTTGCCTCGTATGTCTTT ACGCAGCCCTTGCGCAACGTCAAGGGCTCGGATGCGAGTAACATGCACGACGAGGAGGTTGGCGACGACGATTTG GACTTTTCCGACGACGAAAAGGAGGCAGAGTATAAACGTTCGGTCAAGCAGCAAAGGAGCAAGAACAAGAGCGCA AAGCCTGATGCCTCGCGTCCACCCCATCCGCTTCGACAGCAGACGAGTGCCGATGCAGGCCTCAACTACGACGAC GCCGACGTCAAGGCCTCCAACGACGCCGATGAGGACGGGCCATACCGTCCCTTGGCTCGGCCTCCCGGTTTCGGC ACCCAAAGCCCCTCAGCAGACTTTGTCGAGCCAGCTCCTCGCTTTGGCGCCCACCGCGGCAGCCAGCGCAGAGAC AACCAACGCGGCAGAGGCGCAAAGGGCCGCGCCGTCAATAGAGGCAGCAGCAGTAGCCGCAACGCCTCGTCCAAC CCTCTGCCCCGAGAGCACGTCGCCCCTAGTCTCCAAAGCCTTCAACATCCCCCACAGCCACAACACGCGCTCCCA AATTACCCCTTCCTGCCCGCCTATTCTGCCCAACAAGCCGCCGCCACTCCTCTTCCTCAACCACTGCCTCCTCAG CTTCACGGCGCCTCGTTGCCGAACCTGGGCGACATTTTTATCCCTCCTCCCCGGCATCCGTCCCTCCCTCACGGC GCGCCCGTGCCGCCACCGCCGCCGCTGCTGCCTCGGCAAATGGGCTGGGCCGCTCCCACGCAAACACCAGCTCCC CCATCCAATGGAGGCACCTTTCTCAATCCTTCCCTCATTGCGGCCCTTATGAGTCAGATCCAGGCTGGAACTGGC CAGCAATGGAGTCCGCAGCAGCAGCCCCCACCTGGTTATGGGCGGTAG |
| Transcript | >OphauG2|4370 ATGATTGACCACCAGCCCCCGAGCCCTGCCTCGATAACCTTTGCCTTGGAAGCGGCACTGGGAGGATTACCCGAT GCCATCTCGACACAAGATCAGGCCAAGGGGCTTCCAGAACAGACACAAGAATCGCTCGAGTCACATCCGTCAGGC GAGCAAGAGACAGCAGAGCACCATTCAGAGCCGCCATCAGAGCCACAACAAGTCTCGCAGCACATGTACGTTGAG GCCCTGGCCCCAGTGCAACATGTTGAACCAGAAACGTGCTGCGAGGCTCTAGAATCTCAAACAGTTGCAGCTGTC CCAGTTGCAGCTGTCCCAGTTGCAGCAGATACGCTGTCATCAGAGCTTGTAGACCAGGCAGACGCCCAGCCAGTA TTACAAGAGGCCATGGAGGCTCGAAGCGACAGGGGCGAAAATGCAGAGTGGGAAATAGACTCATCGCCATACGAA TCTTCATGCGACTCGAGTAGCTCCGACTCGTCAGACTCAGAGAATGAAGGCTATCAGCTCCTCGGCCTTGAAGAA ACAGCCCGCCTGCTCATGGAGGCCGAGGCCGGCTCCGACGACGAGACGGACCCGTCCAAGGGCGGCAAACTCCCC ACTGTCCGCGCCGCCCGAGTGCGCACCAAGAACGAAGTTGCTGAAGCCCCCCCACCGCGCCCCGACGTGGTCATC ACGCCCGAGATGGGCATTGAGGAGCTCGGTGTCGTGGTGCACATTGTGGAAGGCGTCGTGGTCATCAAGGCCGTC ACACCAGGAGAGTACCAGGTGCTCGACACAGGCTCCGTCCTCTGCACCGCCAACCGCACCGTGGTGGGCGTCGTG GCGGAAACGATTGGCACCGTGATCCAGCCCATGTACACGGTCCGCTTTGCTGCTGAGAGCAGCGACAATGACGAC GACTTGGTGTCGGCGCTCGGCCTGCAAGTCGGCACAAAGCTCTTTTACCCCGTCGACCTTGCCTCGTATGTCTTT ACGCAGCCCTTGCGCAACGTCAAGGGCTCGGATGCGAGTAACATGCACGACGAGGAGGTTGGCGACGACGATTTG GACTTTTCCGACGACGAAAAGGAGGCAGAGTATAAACGTTCGGTCAAGCAGCAAAGGAGCAAGAACAAGAGCGCA AAGCCTGATGCCTCGCGTCCACCCCATCCGCTTCGACAGCAGACGAGTGCCGATGCAGGCCTCAACTACGACGAC GCCGACGTCAAGGCCTCCAACGACGCCGATGAGGACGGGCCATACCGTCCCTTGGCTCGGCCTCCCGGTTTCGGC ACCCAAAGCCCCTCAGCAGACTTTGTCGAGCCAGCTCCTCGCTTTGGCGCCCACCGCGGCAGCCAGCGCAGAGAC AACCAACGCGGCAGAGGCGCAAAGGGCCGCGCCGTCAATAGAGGCAGCAGCAGTAGCCGCAACGCCTCGTCCAAC CCTCTGCCCCGAGAGCACGTCGCCCCTAGTCTCCAAAGCCTTCAACATCCCCCACAGCCACAACACGCGCTCCCA AATTACCCCTTCCTGCCCGCCTATTCTGCCCAACAAGCCGCCGCCACTCCTCTTCCTCAACCACTGCCTCCTCAG CTTCACGGCGCCTCGTTGCCGAACCTGGGCGACATTTTTATCCCTCCTCCCCGGCATCCGTCCCTCCCTCACGGC GCGCCCGTGCCGCCACCGCCGCCGCTGCTGCCTCGGCAAATGGGCTGGGCCGCTCCCACGCAAACACCAGCTCCC CCATCCAATGGAGGCACCTTTCTCAATCCTTCCCTCATTGCGGCCCTTATGAGTCAGATCCAGGCTGGAACTGGC CAGCAATGGAGTCCGCAGCAGCAGCCCCCACCTGGTTATGGGCGGTAG |
| Gene | >OphauG2|4370 ATGATTGACCACCAGCCCCCGAGCCCTGCCTCGATAACCTTTGCCTTGGAAGCGGCACTGGGAGGATTACCCGAT GCCATCTCGACACAAGATCAGGCCAAGGGGCTTCCAGAACAGACACAAGAATCGCTCGAGTCACATCCGTCAGGC GAGCAAGAGACAGCAGAGCACCATTCAGAGCCGCCATCAGAGCCACAACAAGTCTCGCAGCACATGTACGTTGAG GCCCTGGCCCCAGTGCAACATGTTGAACCAGAAACGTGCTGCGAGGCTCTAGAATCTCAAACAGTTGCAGCTGTC CCAGTTGCAGCTGTCCCAGTTGCAGCAGATACGCTGTCATCAGAGCTTGTAGACCAGGCAGACGCCCAGCCAGTA TTACAAGAGGCCATGGAGGCTCGAAGCGACAGGGGCGAAAATGCAGAGTGGGAAATAGACTCATCGCCATACGAA TCTTCATGCGACTCGAGTAGCTCCGACTCGTCAGACTCAGAGAATGAAGGCTATCAGCTCCTCGGCCTTGAAGAA ACAGCCCGCCTGCTCATGGAGGCCGAGGCCGGCTCCGACGACGAGACGGACCCGTCCAAGGGCGGCAAACTCCCC ACTGTCCGCGCCGCCCGAGTGCGCACCAAGAACGAAGTTGCTGAAGCCCCCCCACCGCGCCCCGACGTGGTCATC ACGCCCGAGATGGGCATTGAGGAGCTCGGTGTCGTGGTGCACATTGTGGAAGGCGTCGTGGTCATCAAGGCCGTC ACACCAGGAGAGTACCAGGTGCTCGACACAGGCTCCGTCCTCTGCACCGCCAACCGCACCGTGGTGGGCGTCGTG GCGGAAACGATTGGCACCGTGATCCAGCCCATGTACACGGTCCGCTTTGCTGCTGAGAGCAGCGACAATGACGAC GACTTGGTGTCGGCGCTCGGCCTGCAAGTCGGCACAAAGCTCTTTTACCCCGTCGACCTTGCCTCGTATGTCTTT ACGCAGCCCTTGCGCAACGTCAAGGGCTCGGATGCGAGTAACATGCACGACGAGGAGGTTGGCGACGACGATTTG GACTTTTCCGACGACGAAAAGGAGGCAGAGTATAAACGTTCGGTCAAGCAGCAAAGGAGCAAGAACAAGAGCGCA AAGCCTGATGCCTCGCGTCCACCCCATCCGCTTCGACAGCAGACGAGTGCCGATGCAGGCCTCAACTACGACGAC GCCGACGTCAAGGCCTCCAACGACGCCGATGAGGACGGGCCATACCGTCCCTTGGCTCGGCCTCCCGGTTTCGGC ACCCAAAGCCCCTCAGCAGACTTTGTCGAGCCAGCTCCTCGCTTTGGCGCCCACCGCGGCAGCCAGCGCAGAGAC AACCAACGCGGCAGAGGCGCAAAGGGCCGCGCCGTCAATAGAGGCAGCAGCAGTAGCCGCAACGCCTCGTCCAAC CCTCTGCCCCGAGAGCACGTCGCCCCTAGTCTCCAAAGCCTTCAACATCCCCCACAGCCACAACACGCGCTCCCA AATTACCCCTTCCTGCCCGCCTATTCTGCCCAACAAGCCGCCGCCACTCCTCTTCCTCAACCACTGCCTCCTCAG CTTCACGGCGCCTCGTTGCCGAACCTGGGCGACATTTTTATCCCTCCTCCCCGGCATCCGTCCCTCCCTCACGGC GCGCCCGTGCCGCCACCGCCGCCGCTGCTGCCTCGGCAAATGGGCTGGGCCGCTCCCACGCAAACACCAGCTCCC CCATCCAATGGAGGCACCTTTCTCAATCCTTCCCTCATTGCGGCCCTTATGAGTCAGATCCAGGCTGGAACTGGC CAGCAATGGAGTCCGCAGCAGCAGCCCCCACCTGGTTATGGGCGGTAG |