© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|4202 |
| Gene name | |
| Location | Contig_341:15309..17570 |
| Strand | + |
| Gene length (bp) | 2261 |
| Transcript length (bp) | 2142 |
| Coding sequence length (bp) | 2142 |
| Protein length (aa) | 714 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08238 | Sel1 | Sel1 repeat | 1.1E+00 | 140 | 173 |
| PF08238 | Sel1 | Sel1 repeat | 8.6E-03 | 180 | 215 |
| PF08238 | Sel1 | Sel1 repeat | 7.5E+01 | 219 | 248 |
| PF08238 | Sel1 | Sel1 repeat | 3.1E-03 | 321 | 351 |
| PF08238 | Sel1 | Sel1 repeat | 1.2E-01 | 382 | 411 |
| PF08238 | Sel1 | Sel1 repeat | 2.7E-03 | 412 | 446 |
| PF08238 | Sel1 | Sel1 repeat | 5.1E+00 | 449 | 482 |
| PF08238 | Sel1 | Sel1 repeat | 1.7E+02 | 484 | 499 |
| PF08238 | Sel1 | Sel1 repeat | 8.7E+01 | 534 | 551 |
| PF08238 | Sel1 | Sel1 repeat | 2.8E+02 | 584 | 602 |
| PF08238 | Sel1 | Sel1 repeat | 2.0E-03 | 605 | 632 |
| PF08238 | Sel1 | Sel1 repeat | 4.5E-03 | 641 | 668 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UBV2|SE1L1_HUMAN | Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3 | 127 | 691 | 3.0E-81 |
| sp|Q9ESM7|SE1L1_MESAU | Protein sel-1 homolog 1 OS=Mesocricetus auratus GN=Sel1l PE=2 SV=1 | 127 | 691 | 2.0E-80 |
| sp|Q80Z70|SE1L1_RAT | Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Sel1l PE=2 SV=2 | 127 | 691 | 5.0E-80 |
| sp|Q9Z2G6|SE1L1_MOUSE | Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l PE=1 SV=2 | 127 | 691 | 9.0E-80 |
| sp|Q5TEA6|SE1L2_HUMAN | Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2 | 130 | 691 | 6.0E-77 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UBV2|SE1L1_HUMAN | Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3 | 127 | 691 | 3.0E-81 |
| sp|Q9ESM7|SE1L1_MESAU | Protein sel-1 homolog 1 OS=Mesocricetus auratus GN=Sel1l PE=2 SV=1 | 127 | 691 | 2.0E-80 |
| sp|Q80Z70|SE1L1_RAT | Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Sel1l PE=2 SV=2 | 127 | 691 | 5.0E-80 |
| sp|Q9Z2G6|SE1L1_MOUSE | Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l PE=1 SV=2 | 127 | 691 | 9.0E-80 |
| sp|Q5TEA6|SE1L2_HUMAN | Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2 | 130 | 691 | 6.0E-77 |
| sp|Q3V172|SE1L2_MOUSE | Protein sel-1 homolog 2 OS=Mus musculus GN=Sel1l2 PE=2 SV=1 | 127 | 691 | 4.0E-76 |
| sp|Q5XI05|SE1L2_RAT | Protein sel-1 homolog 2 OS=Rattus norvegicus GN=Sel1l2 PE=2 SV=1 | 127 | 691 | 4.0E-75 |
| sp|O13875|YE1A_SCHPO | Uncharacterized Sel1-like repeat-containing protein C1B3.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B3.10c PE=3 SV=4 | 127 | 691 | 3.0E-58 |
| sp|Q9LM25|HRD3A_ARATH | ERAD-associated E3 ubiquitin-protein ligase component HRD3A OS=Arabidopsis thaliana GN=HRD3A PE=1 SV=1 | 172 | 692 | 4.0E-55 |
| sp|Q10NT7|HRD3_ORYSJ | ERAD-associated E3 ubiquitin-protein ligase component HRD3 OS=Oryza sativa subsp. japonica GN=HRD3 PE=2 SV=1 | 176 | 696 | 3.0E-46 |
| sp|Q9C6B6|HRD3B_ARATH | ERAD-associated E3 ubiquitin-protein ligase component HRD3B OS=Arabidopsis thaliana GN=HRD3B PE=3 SV=1 | 176 | 692 | 2.0E-43 |
| sp|Q6FNV5|HRD3_CANGA | ERAD-associated E3 ubiquitin-protein ligase component HRD3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=HRD3 PE=3 SV=1 | 134 | 693 | 1.0E-41 |
| sp|Q05787|HRD3_YEAST | ERAD-associated E3 ubiquitin-protein ligase component HRD3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRD3 PE=1 SV=1 | 130 | 713 | 1.0E-35 |
| sp|Q9USV0|HRD3_SCHPO | Putative ERAD-associated E3 ubiquitin-protein ligase component OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC28F2.08c PE=3 SV=1 | 176 | 693 | 2.0E-31 |
| sp|A0A0H2VDN9|ESIB_ECOL6 | Secretory immunoglobulin A-binding protein EsiB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=esiB PE=1 SV=1 | 193 | 635 | 4.0E-17 |
| sp|A0A0H2VDN9|ESIB_ECOL6 | Secretory immunoglobulin A-binding protein EsiB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=esiB PE=1 SV=1 | 304 | 660 | 2.0E-15 |
| sp|Q68CR1|SE1L3_HUMAN | Protein sel-1 homolog 3 OS=Homo sapiens GN=SEL1L3 PE=1 SV=2 | 314 | 698 | 3.0E-12 |
| sp|Q80TS8|SE1L3_MOUSE | Protein sel-1 homolog 3 OS=Mus musculus GN=Sel1l3 PE=2 SV=3 | 314 | 695 | 2.0E-11 |
| sp|P77234|YBEQ_ECOLI | Uncharacterized protein YbeQ OS=Escherichia coli (strain K12) GN=ybeQ PE=4 SV=2 | 360 | 664 | 1.0E-07 |
| sp|P77234|YBEQ_ECOLI | Uncharacterized protein YbeQ OS=Escherichia coli (strain K12) GN=ybeQ PE=4 SV=2 | 434 | 676 | 1.0E-06 |
| sp|P77296|YBET_ECOLI | Uncharacterized protein YbeT OS=Escherichia coli (strain K12) GN=ybeT PE=2 SV=1 | 313 | 451 | 1.0E-06 |
| sp|Q9LM25|HRD3A_ARATH | ERAD-associated E3 ubiquitin-protein ligase component HRD3A OS=Arabidopsis thaliana GN=HRD3A PE=1 SV=1 | 129 | 560 | 2.0E-06 |
| sp|P77234|YBEQ_ECOLI | Uncharacterized protein YbeQ OS=Escherichia coli (strain K12) GN=ybeQ PE=4 SV=2 | 176 | 438 | 3.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|4202 MKSAAFLGLLLSQVAQVLSTNAQYYHDTHGQTEPTRHGSSHGLGPQEPAQKQSQPVAEQPGAKLVNDALLELHKV PQSLQRRRRQKSGVVASIFRYIIETIPTGPARAPSQAGQTPKSTASAPLLAAVELLEQAVQYNNSDALYLLAELN FFGKYGHARNLHAAFGHYHKLASVHGNTTAQYMIALYHSTGVGDVVARDQAKALLYYTFAALRGDTRAEMATGFR HHSGIGASKSCETAVKYYKRVADKAINWYRSGPPGGMSWVQQAWRIADDHGGIYGEGASVSSSGLNARKASPHSD AHAAISDVIEYLDLVSQKGDSKASYNLGRIYYDGQRGLPKDFDMAKKYFLLVASRYWKKDNRITEHYSKEIEKLA GKAAGFIGRMYMRGDGVVQSFERARAWFDRGISLGDAQSQYGRGLMLLNGLGGKENVKLAMEMLTAAAAQDYAPA QVQMGRLYLDQGGLEDIRIANNHFELAARHGNIEAHYYLAEMSFHGVGREKHCAVAVNYYKNVAEKAEPLVSSWA DASEAYESGDYDLALVNFLMAAEQGYERAQTNVAYMLDKMWAKVPLAEWFHQRYEGSALLHNPQLALIYWTRSSR QSNIDALVRMGDYYFYGIGTERDVGKALQCYTGASDYSQSAQALFNLGWMHENGIGMTQDFHLAKRYYDHALAVN EEAYLPVTLSLLKLRVRSAWNTLTRGPVHSIQDEPSKP* |
| Coding | >OphauG2|4202 ATGAAAAGCGCGGCTTTCTTAGGGCTCCTGCTGTCGCAGGTGGCCCAAGTCTTGTCCACCAACGCGCAATACTAT CACGATACACACGGGCAAACGGAGCCCACGCGCCATGGCAGCAGTCATGGGCTTGGCCCGCAAGAGCCCGCCCAG AAGCAAAGCCAGCCCGTGGCAGAGCAGCCAGGAGCTAAGCTCGTAAACGACGCCTTGCTGGAGCTTCACAAGGTT CCCCAGTCCCTACAGCGCCGACGAAGACAGAAGTCTGGAGTCGTCGCATCCATCTTTCGCTACATCATCGAGACT ATTCCTACGGGCCCTGCCAGGGCGCCATCACAAGCTGGGCAAACGCCCAAGAGCACGGCCAGTGCGCCTTTACTG GCTGCTGTTGAGCTGCTGGAGCAGGCTGTCCAATACAACAACTCGGACGCGCTATATCTCCTGGCTGAGCTCAAT TTCTTTGGCAAATACGGCCATGCTCGCAACCTACACGCTGCCTTTGGCCACTACCACAAGCTGGCAAGCGTGCAC GGCAACACCACAGCGCAATACATGATTGCCCTCTACCACTCGACTGGCGTAGGCGACGTGGTTGCTCGTGACCAG GCCAAGGCTTTGCTATACTACACGTTTGCCGCCCTTCGTGGCGATACTCGAGCCGAGATGGCGACGGGGTTTCGA CACCACAGCGGCATTGGCGCGAGTAAGAGCTGCGAGACTGCTGTCAAGTACTACAAGCGAGTTGCCGACAAGGCC ATAAACTGGTACCGTTCTGGCCCTCCCGGGGGCATGTCGTGGGTCCAGCAAGCATGGCGCATTGCTGACGACCAC GGCGGCATCTACGGTGAAGGCGCCAGCGTATCTAGCTCGGGCCTCAACGCACGCAAGGCAAGCCCGCACTCGGAT GCACACGCCGCTATTAGCGACGTTATCGAGTACCTCGATCTGGTCTCCCAAAAGGGAGACTCCAAGGCGTCATAT AACCTTGGCAGAATATACTACGACGGCCAGAGAGGCCTTCCAAAAGATTTTGACATGGCCAAGAAGTACTTTTTA CTTGTAGCTTCGAGGTACTGGAAAAAGGACAACCGCATCACGGAACATTACAGCAAGGAAATCGAGAAGCTGGCA GGCAAGGCTGCAGGCTTCATTGGCCGCATGTACATGAGGGGAGATGGGGTCGTGCAAAGCTTTGAACGAGCGCGC GCCTGGTTCGACCGCGGCATATCGCTTGGAGACGCGCAGTCGCAATACGGACGGGGGCTGATGCTTCTCAACGGG CTCGGGGGCAAGGAAAACGTCAAGCTAGCCATGGAGATGCTCACGGCTGCGGCGGCTCAGGACTACGCACCGGCG CAGGTGCAGATGGGGCGTCTGTATCTCGATCAAGGCGGGCTCGAGGATATTCGCATCGCCAACAATCACTTTGAG CTGGCCGCTAGGCACGGCAACATTGAGGCCCACTACTATCTTGCTGAAATGTCTTTTCATGGAGTTGGACGAGAA AAGCACTGTGCTGTCGCCGTCAACTATTACAAAAACGTGGCTGAAAAGGCTGAGCCCCTGGTCTCGTCGTGGGCC GATGCCAGCGAGGCGTACGAGTCTGGGGACTACGACCTGGCCCTGGTCAACTTCCTCATGGCTGCCGAGCAGGGC TACGAGCGGGCGCAGACCAACGTGGCATACATGCTGGACAAGATGTGGGCCAAGGTGCCCCTGGCTGAATGGTTC CATCAGCGGTACGAGGGCAGCGCTTTGCTGCACAACCCTCAGCTGGCCCTCATCTACTGGACGCGGTCTTCGCGG CAGTCCAATATTGATGCCTTGGTAAGGATGGGGGATTATTATTTTTATGGCATCGGAACAGAACGGGATGTGGGC AAGGCGCTGCAGTGCTATACCGGAGCGTCGGACTACTCGCAGAGCGCGCAGGCTCTCTTCAACCTGGGGTGGATG CACGAGAATGGCATCGGAATGACGCAAGACTTCCACCTGGCTAAGCGCTACTACGACCATGCACTGGCAGTCAAC GAAGAGGCATACCTGCCCGTGACGCTGAGCCTGTTGAAGCTGCGAGTGCGAAGCGCGTGGAACACGTTGACCCGA GGCCCAGTGCATTCGATTCAGGACGAGCCAAGTAAGCCGTGA |
| Transcript | >OphauG2|4202 ATGAAAAGCGCGGCTTTCTTAGGGCTCCTGCTGTCGCAGGTGGCCCAAGTCTTGTCCACCAACGCGCAATACTAT CACGATACACACGGGCAAACGGAGCCCACGCGCCATGGCAGCAGTCATGGGCTTGGCCCGCAAGAGCCCGCCCAG AAGCAAAGCCAGCCCGTGGCAGAGCAGCCAGGAGCTAAGCTCGTAAACGACGCCTTGCTGGAGCTTCACAAGGTT CCCCAGTCCCTACAGCGCCGACGAAGACAGAAGTCTGGAGTCGTCGCATCCATCTTTCGCTACATCATCGAGACT ATTCCTACGGGCCCTGCCAGGGCGCCATCACAAGCTGGGCAAACGCCCAAGAGCACGGCCAGTGCGCCTTTACTG GCTGCTGTTGAGCTGCTGGAGCAGGCTGTCCAATACAACAACTCGGACGCGCTATATCTCCTGGCTGAGCTCAAT TTCTTTGGCAAATACGGCCATGCTCGCAACCTACACGCTGCCTTTGGCCACTACCACAAGCTGGCAAGCGTGCAC GGCAACACCACAGCGCAATACATGATTGCCCTCTACCACTCGACTGGCGTAGGCGACGTGGTTGCTCGTGACCAG GCCAAGGCTTTGCTATACTACACGTTTGCCGCCCTTCGTGGCGATACTCGAGCCGAGATGGCGACGGGGTTTCGA CACCACAGCGGCATTGGCGCGAGTAAGAGCTGCGAGACTGCTGTCAAGTACTACAAGCGAGTTGCCGACAAGGCC ATAAACTGGTACCGTTCTGGCCCTCCCGGGGGCATGTCGTGGGTCCAGCAAGCATGGCGCATTGCTGACGACCAC GGCGGCATCTACGGTGAAGGCGCCAGCGTATCTAGCTCGGGCCTCAACGCACGCAAGGCAAGCCCGCACTCGGAT GCACACGCCGCTATTAGCGACGTTATCGAGTACCTCGATCTGGTCTCCCAAAAGGGAGACTCCAAGGCGTCATAT AACCTTGGCAGAATATACTACGACGGCCAGAGAGGCCTTCCAAAAGATTTTGACATGGCCAAGAAGTACTTTTTA CTTGTAGCTTCGAGGTACTGGAAAAAGGACAACCGCATCACGGAACATTACAGCAAGGAAATCGAGAAGCTGGCA GGCAAGGCTGCAGGCTTCATTGGCCGCATGTACATGAGGGGAGATGGGGTCGTGCAAAGCTTTGAACGAGCGCGC GCCTGGTTCGACCGCGGCATATCGCTTGGAGACGCGCAGTCGCAATACGGACGGGGGCTGATGCTTCTCAACGGG CTCGGGGGCAAGGAAAACGTCAAGCTAGCCATGGAGATGCTCACGGCTGCGGCGGCTCAGGACTACGCACCGGCG CAGGTGCAGATGGGGCGTCTGTATCTCGATCAAGGCGGGCTCGAGGATATTCGCATCGCCAACAATCACTTTGAG CTGGCCGCTAGGCACGGCAACATTGAGGCCCACTACTATCTTGCTGAAATGTCTTTTCATGGAGTTGGACGAGAA AAGCACTGTGCTGTCGCCGTCAACTATTACAAAAACGTGGCTGAAAAGGCTGAGCCCCTGGTCTCGTCGTGGGCC GATGCCAGCGAGGCGTACGAGTCTGGGGACTACGACCTGGCCCTGGTCAACTTCCTCATGGCTGCCGAGCAGGGC TACGAGCGGGCGCAGACCAACGTGGCATACATGCTGGACAAGATGTGGGCCAAGGTGCCCCTGGCTGAATGGTTC CATCAGCGGTACGAGGGCAGCGCTTTGCTGCACAACCCTCAGCTGGCCCTCATCTACTGGACGCGGTCTTCGCGG CAGTCCAATATTGATGCCTTGGTAAGGATGGGGGATTATTATTTTTATGGCATCGGAACAGAACGGGATGTGGGC AAGGCGCTGCAGTGCTATACCGGAGCGTCGGACTACTCGCAGAGCGCGCAGGCTCTCTTCAACCTGGGGTGGATG CACGAGAATGGCATCGGAATGACGCAAGACTTCCACCTGGCTAAGCGCTACTACGACCATGCACTGGCAGTCAAC GAAGAGGCATACCTGCCCGTGACGCTGAGCCTGTTGAAGCTGCGAGTGCGAAGCGCGTGGAACACGTTGACCCGA GGCCCAGTGCATTCGATTCAGGACGAGCCAAGTAAGCCGTGA |
| Gene | >OphauG2|4202 ATGAAAAGCGCGGCTTTCTTAGGGCTCCGTCAGTAGTCCCTGTCTTGCTTGGCCATGGCAGCTTGCGTCTTGCTC ACATGCATCCAGTGCTGTCGCAGGTGGCCCAAGTCTTGTCCACCAACGCGCAATACTATCACGATACACACGGGC AAACGGAGCCCACGCGCCATGGCAGCAGTCATGGGCTTGGCCCGCAAGAGCCCGCCCAGAAGCAAAGCCAGCCCG TGGCAGAGCAGCCAGGTTTGCACCTCGCGCCTCTGGGCAATGGAACCTCGGTGGCATGCAACTGATGACGTCCAG GAGCTAAGCTCGTAAACGACGCCTTGCTGGAGCTTCACAAGGTTCCCCAGTCCCTACAGCGCCGACGAAGACAGA AGTCTGGAGTCGTCGCATCCATCTTTCGCTACATCATCGAGACTATTCCTACGGGCCCTGCCAGGGCGCCATCAC AAGCTGGGCAAACGCCCAAGAGCACGGCCAGTGCGCCTTTACTGGCTGCTGTTGAGCTGCTGGAGCAGGCTGTCC AATACAACAACTCGGACGCGCTATATCTCCTGGCTGAGCTCAATTTCTTTGGCAAATACGGCCATGCTCGCAACC TACACGCTGCCTTTGGCCACTACCACAAGCTGGCAAGCGTGCACGGCAACACCACAGCGCAATACATGATTGCCC TCTACCACTCGACTGGCGTAGGCGACGTGGTTGCTCGTGACCAGGCCAAGGCTTTGCTATACTACACGTTTGCCG CCCTTCGTGGCGATACTCGAGCCGAGATGGCGACGGGGTTTCGACACCACAGCGGCATTGGCGCGAGTAAGAGCT GCGAGACTGCTGTCAAGTACTACAAGCGAGTTGCCGACAAGGCCATAAACTGGTACCGTTCTGGCCCTCCCGGGG GCATGTCGTGGGTCCAGCAAGCATGGCGCATTGCTGACGACCACGGCGGCATCTACGGTGAAGGCGCCAGCGTAT CTAGCTCGGGCCTCAACGCACGCAAGGCAAGCCCGCACTCGGATGCACACGCCGCTATTAGCGACGTTATCGAGT ACCTCGATCTGGTCTCCCAAAAGGGAGACTCCAAGGCGTCATATAACCTTGGCAGAATATACTACGACGGCCAGA GAGGCCTTCCAAAAGATTTTGACATGGCCAAGAAGTACTTTTTACTTGTAGCTTCGAGGTACTGGAAAAAGGACA ACCGCATCACGGAACATTACAGCAAGGAAATCGAGAAGCTGGCAGGCAAGGCTGCAGGCTTCATTGGCCGCATGT ACATGAGGGGAGATGGGGTCGTGCAAAGCTTTGAACGAGCGCGCGCCTGGTTCGACCGCGGCATATCGCTTGGAG ACGCGCAGTCGCAATACGGACGGGGGCTGATGCTTCTCAACGGGCTCGGGGGCAAGGAAAACGTCAAGCTAGCCA TGGAGATGCTCACGGCTGCGGCGGCTCAGGACTACGCACCGGCGCAGGTGCAGATGGGGCGTCTGTATCTCGATC AAGGCGGGCTCGAGGATATTCGCATCGCCAACAATCACTTTGAGCTGGCCGCTAGGCACGGCAACATTGAGGCCC ACTACTATCTTGCTGAAATGTCTTTTCATGGAGTTGGACGAGAAAAGCACTGTGCTGTCGCCGTCAACTATTACA AAAACGTGGCTGAAAAGGCTGAGCCCCTGGTCTCGTCGTGGGCCGATGCCAGCGAGGCGTACGAGTCTGGGGACT ACGACCTGGCCCTGGTCAACTTCCTCATGGCTGCCGAGCAGGGCTACGAGCGGGCGCAGACCAACGTGGCATACA TGCTGGACAAGATGTGGGCCAAGGTGCCCCTGGCTGAATGGTTCCATCAGCGGTACGAGGGCAGCGCTTTGCTGC ACAACCCTCAGCTGGCCCTCATCTACTGGACGCGGTCTTCGCGGCAGTCCAATATTGATGCCTTGGTAAGGATGG GGGATTATTATTTTTATGGCATCGGAACAGAACGGGATGTGGGCAAGGCGCTGCAGTGCTATACCGGAGCGTCGG ACTACTCGCAGAGCGCGCAGGCTCTCTTCAACCTGGGGTGGATGCACGAGAATGGCATCGGAATGACGCAAGACT TCCACCTGGCTAAGCGCTACTACGACCATGCACTGGCAGTCAACGAAGAGGCATACCTGCCCGTGACGCTGAGCC TGTTGAAGCTGCGAGTGCGAAGCGCGTGGAACACGTTGACCCGAGGCCCAGTGCATTCGATTCAGGACGAGCCAA GTAAGCCGTGA |