© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|4100 |
| Gene name | |
| Location | Contig_33:38262..39928 |
| Strand | + |
| Gene length (bp) | 1666 |
| Transcript length (bp) | 1110 |
| Coding sequence length (bp) | 1110 |
| Protein length (aa) | 370 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03009 | GDPD | Glycerophosphoryl diester phosphodiesterase family | 6.5E-30 | 31 | 296 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14169|PGC1_SCHPO | Phosphatidylglycerol phospholipase C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4D7.02c PE=3 SV=2 | 26 | 297 | 1.0E-25 |
| sp|Q08959|PGC1_YEAST | Phosphatidylglycerol phospholipase C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PGC1 PE=1 SV=1 | 27 | 256 | 8.0E-18 |
| sp|P54527|YQIK_BACSU | Uncharacterized protein YqiK OS=Bacillus subtilis (strain 168) GN=yqiK PE=4 SV=2 | 30 | 143 | 2.0E-10 |
| sp|Q9NZC3|GDE1_HUMAN | Glycerophosphodiester phosphodiesterase 1 OS=Homo sapiens GN=GDE1 PE=1 SV=1 | 16 | 116 | 2.0E-09 |
| sp|Q9JL56|GDE1_MOUSE | Glycerophosphodiester phosphodiesterase 1 OS=Mus musculus GN=Gde1 PE=1 SV=1 | 16 | 105 | 9.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14169|PGC1_SCHPO | Phosphatidylglycerol phospholipase C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4D7.02c PE=3 SV=2 | 26 | 297 | 1.0E-25 |
| sp|Q08959|PGC1_YEAST | Phosphatidylglycerol phospholipase C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PGC1 PE=1 SV=1 | 27 | 256 | 8.0E-18 |
| sp|P54527|YQIK_BACSU | Uncharacterized protein YqiK OS=Bacillus subtilis (strain 168) GN=yqiK PE=4 SV=2 | 30 | 143 | 2.0E-10 |
| sp|Q9NZC3|GDE1_HUMAN | Glycerophosphodiester phosphodiesterase 1 OS=Homo sapiens GN=GDE1 PE=1 SV=1 | 16 | 116 | 2.0E-09 |
| sp|Q9JL56|GDE1_MOUSE | Glycerophosphodiester phosphodiesterase 1 OS=Mus musculus GN=Gde1 PE=1 SV=1 | 16 | 105 | 9.0E-09 |
| sp|Q9JL55|GDE1_RAT | Glycerophosphodiester phosphodiesterase 1 OS=Rattus norvegicus GN=Gde1 PE=1 SV=2 | 16 | 105 | 1.0E-08 |
| sp|Q3T0T0|GDE1_BOVIN | Glycerophosphodiester phosphodiesterase 1 OS=Bos taurus GN=GDE1 PE=2 SV=1 | 16 | 116 | 1.0E-08 |
| sp|P9WMU3|GLPQ1_MYCTU | Probable glycerophosphoryl diester phosphodiesterase 1 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=glpQ1 PE=1 SV=1 | 26 | 98 | 3.0E-08 |
| sp|P9WMU2|GLPQ1_MYCTO | Probable glycerophosphoryl diester phosphodiesterase 1 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=glpQ1 PE=3 SV=1 | 26 | 98 | 3.0E-08 |
| sp|Q8N9F7|GDPD1_HUMAN | Glycerophosphodiester phosphodiesterase domain-containing protein 1 OS=Homo sapiens GN=GDPD1 PE=1 SV=2 | 24 | 95 | 5.0E-08 |
| sp|Q9CRY7|GDPD1_MOUSE | Glycerophosphodiester phosphodiesterase domain-containing protein 1 OS=Mus musculus GN=Gdpd1 PE=1 SV=1 | 24 | 95 | 9.0E-08 |
| sp|Q0VGK4|GDPD1_RAT | Glycerophosphodiester phosphodiesterase domain-containing protein 1 OS=Rattus norvegicus GN=Gdpd1 PE=2 SV=1 | 24 | 95 | 1.0E-07 |
| sp|P10908|UGPQ_ECOLI | Glycerophosphoryl diester phosphodiesterase OS=Escherichia coli (strain K12) GN=ugpQ PE=1 SV=1 | 26 | 98 | 7.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006629 | lipid metabolic process | Yes |
| GO:0008081 | phosphoric diester hydrolase activity | Yes |
| GO:0042578 | phosphoric ester hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0003824 | catalytic activity | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008150 | biological_process | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 330 | 352 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 6351 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|4100 METVPQVAASFTAARPSTKCPKLLIPQAVAHRGFRAQEAENTMAAFCAAARAGAQGIETDVRLSRDGVAVLSHDG SLQRCFGVEGQVAQREWAQLARLRTVRDARQGMPRLRDLLAWLAGRPFDGGFEAGEGVEVEGGVRERLWVLLDIK MDDDAQTLVDAIATAIAQVPPSSVPWEQRIVLGCWNASTVRAARTSLPTFPLSHIGVSLSYASHFLAPPASLPAF NLAYPPLLLRGPSLLDKLRSARRAVFLWTLNDQASMNWALTLNTLSSSLPDDVDASQKHARVDAVISDDPALFLD VCAKFEARLASNPSAPLTHPPLTTRAAIRRTLGLVFVQLLMTLIFLYRRFWLYRLDYMNEATPSRHLKK* |
| Coding | >OphauG2|4100 ATGGAGACGGTGCCTCAAGTAGCAGCATCCTTCACCGCCGCCCGCCCCTCGACCAAGTGCCCCAAGCTGCTCATC CCGCAGGCGGTTGCGCATCGCGGCTTCCGGGCGCAAGAGGCAGAAAACACCATGGCGGCGTTTTGCGCGGCGGCG CGGGCCGGGGCGCAGGGGATCGAGACGGACGTGCGTCTGTCGCGCGACGGCGTGGCGGTGCTTTCGCACGACGGG TCGCTGCAGCGGTGCTTTGGGGTCGAGGGCCAGGTTGCGCAGCGCGAGTGGGCGCAGCTGGCCCGGCTGCGCACC GTGAGAGATGCTCGGCAGGGCATGCCGCGCCTGCGAGACTTGCTGGCGTGGCTGGCGGGCAGGCCGTTTGACGGG GGGTTTGAGGCCGGGGAGGGCGTCGAGGTGGAGGGGGGCGTGAGGGAGAGGCTGTGGGTCTTGTTGGATATAAAG ATGGACGATGATGCCCAGACCCTCGTCGATGCCATTGCCACGGCTATTGCTCAGGTGCCTCCCTCGTCCGTCCCG TGGGAGCAGCGCATCGTGCTCGGCTGCTGGAACGCTTCCACCGTCCGTGCCGCCCGCACATCCCTGCCCACCTTT CCCCTCTCCCACATTGGCGTCTCCCTCTCCTACGCCTCCCACTTTCTCGCTCCGCCTGCCTCGCTCCCAGCCTTC AACCTCGCCTACCCGCCTCTCCTCCTTCGTGGGCCTTCTCTCCTCGATAAACTCCGCTCCGCCCGCCGCGCCGTC TTCCTCTGGACCTTGAATGACCAGGCTTCCATGAACTGGGCCCTGACCCTAAACACCTTGTCCTCGTCCCTGCCC GACGACGTCGACGCCTCCCAGAAACACGCCCGCGTCGACGCCGTCATCTCGGACGATCCCGCCCTCTTCCTCGAT GTGTGTGCAAAGTTTGAGGCGCGTCTAGCCTCAAATCCATCTGCTCCCCTTACTCACCCTCCCCTCACTACGCGT GCTGCTATTCGTCGTACTCTGGGCCTTGTTTTCGTTCAGCTTCTCATGACTCTCATCTTTCTCTACCGTCGCTTT TGGCTATACAGGCTGGACTACATGAACGAAGCTACGCCATCTCGTCACCTGAAAAAGTAG |
| Transcript | >OphauG2|4100 ATGGAGACGGTGCCTCAAGTAGCAGCATCCTTCACCGCCGCCCGCCCCTCGACCAAGTGCCCCAAGCTGCTCATC CCGCAGGCGGTTGCGCATCGCGGCTTCCGGGCGCAAGAGGCAGAAAACACCATGGCGGCGTTTTGCGCGGCGGCG CGGGCCGGGGCGCAGGGGATCGAGACGGACGTGCGTCTGTCGCGCGACGGCGTGGCGGTGCTTTCGCACGACGGG TCGCTGCAGCGGTGCTTTGGGGTCGAGGGCCAGGTTGCGCAGCGCGAGTGGGCGCAGCTGGCCCGGCTGCGCACC GTGAGAGATGCTCGGCAGGGCATGCCGCGCCTGCGAGACTTGCTGGCGTGGCTGGCGGGCAGGCCGTTTGACGGG GGGTTTGAGGCCGGGGAGGGCGTCGAGGTGGAGGGGGGCGTGAGGGAGAGGCTGTGGGTCTTGTTGGATATAAAG ATGGACGATGATGCCCAGACCCTCGTCGATGCCATTGCCACGGCTATTGCTCAGGTGCCTCCCTCGTCCGTCCCG TGGGAGCAGCGCATCGTGCTCGGCTGCTGGAACGCTTCCACCGTCCGTGCCGCCCGCACATCCCTGCCCACCTTT CCCCTCTCCCACATTGGCGTCTCCCTCTCCTACGCCTCCCACTTTCTCGCTCCGCCTGCCTCGCTCCCAGCCTTC AACCTCGCCTACCCGCCTCTCCTCCTTCGTGGGCCTTCTCTCCTCGATAAACTCCGCTCCGCCCGCCGCGCCGTC TTCCTCTGGACCTTGAATGACCAGGCTTCCATGAACTGGGCCCTGACCCTAAACACCTTGTCCTCGTCCCTGCCC GACGACGTCGACGCCTCCCAGAAACACGCCCGCGTCGACGCCGTCATCTCGGACGATCCCGCCCTCTTCCTCGAT GTGTGTGCAAAGTTTGAGGCGCGTCTAGCCTCAAATCCATCTGCTCCCCTTACTCACCCTCCCCTCACTACGCGT GCTGCTATTCGTCGTACTCTGGGCCTTGTTTTCGTTCAGCTTCTCATGACTCTCATCTTTCTCTACCGTCGCTTT TGGCTATACAGGCTGGACTACATGAACGAAGCTACGCCATCTCGTCACCTGAAAAAGTAG |
| Gene | >OphauG2|4100 ATGGAGACGGTGCCTCAAGGTGTGTGTGTTTTTTTTTTTTTCTCATCGTGATGTTTTTTCGAGCCCGAGATTCAA CAACAAACATCAAGGGCAAAGAAGCCAAAAAACAAAAAAAAAAAAAAAAGACAGCGACTAACAGCAGCAGTAGCA GCATCCTTCACCGCCGCCCGCCCCTCGACCAAGTGCCCCAAGCTGCTCATCCCGCAGGCGGTTGCGCATCGCGGC TTCCGGGCGCAAGAGGCAGAAAACACCATGGCGGCGTTTTGCGCGGCGGCGCGGGCCGGGGCGCAGGGGATCGAG ACGGACGTGCGTCTGTCGCGCGACGGCGTGGCGGTGCTTTCGCACGACGGGTCGCTGCAGCGGTGCTTTGGGGTC GAGGGCCAGGTTGCGCAGCGCGAGTGGGCGCAGCTGGCCCGGCTGCGCACCGTGAGAGATGCTCGGCAGGGCATG CCGCGCCTGCGAGACTTGCTGGCGTGGCTGGCGGGCAGGCCGTTTGACGGGGGGTTTGAGGCCGGGGAGGGCGTC GAGGTGGAGGGGGGCGTGAGGGAGAGGCTGTGGGTCTTGTTGGATATAAAGGTGAGAGAGAGAGAGAGAGAGAGA AGTCTTGGGGCGAGTGGGAACTTGTGGAGGGACCATGGGTTGCTAATCGCAGGTAGATGGACGATGATGCCCAGA CCCTCGTCGATGCCATTGCCACGGCTATTGCTCAGGTGCCTCCCTCGTCCGTCCCGTGGGAGCAGCGCATCGTGC TCGGCTGCTGGAACGTACGTTTTAGGCCCTTGGTCTCTTTTTGCCCCTTGGTCTCTTTTTGCTGCCTCTTGGTCT CTTTTTGCTGCCCCTTGGTCTCTTTTGCCCCCCTTGGTCTCGTTTTACCCCCTTGGCCTCGTTTACCAGGCCCTC GAGTCCTTCTTGTTATGCTTATGCCTCTTTTCCCCGACCTACATTCTCTTTATACCCCTCGGCCCCTTCTCTACA TCACGTCATAACATCCCTTCTCGGCAACCTATACTCGCCTTGTCTATACATGTCTCAATCTCCCATCCTCGTCTA TACCACCCCTTTATATACCCCCCCCCCTCTCGCCCTACTCTGTAAATCCTAACTCGCATCTTAGGCTTCCACCGT CCGTGCCGCCCGCACATCCCTGCCCACCTTTCCCCTCTCCCACATTGGCGTCTCCCTCTCCTACGCCTCCCACTT TCTCGCTCCGCCTGCCTCGCTCCCAGCCTTCAACCTCGCCTACCCGCCTCTCCTCCTTCGTGGGCCTTCTCTCCT CGATAAACTCCGCTCCGCCCGCCGCGCCGTCTTCCTCTGGACCTTGAATGACCAGGCTTCCATGAACTGGGCCCT GACCCTAAACACCTTGTCCTCGTCCCTGCCCGACGACGTCGACGCCTCCCAGAAACACGCCCGCGTCGACGCCGT CATCTCGGACGATCCCGCCCTCTTCCTCGATGTGTGTGCAAAGTTTGAGGCGCGTCTAGCCTCAAATCCATCTGC TCCCCTTACTCACCCTCCCCTCACTACGCGTGCTGCTATTCGTCGTACTCTGGGCCTTGTTTTCGTTCAGCTTCT CATGACTCTCATCTTTCTCTACCGTCGCTTTTGGCTATACAGGCTGGACTACATGAACGAAGCTACGCCATCTCG TCACCTGAAAAAGTAG |