© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|3995 |
| Gene name | |
| Location | Contig_318:4858..5980 |
| Strand | - |
| Gene length (bp) | 1122 |
| Transcript length (bp) | 930 |
| Coding sequence length (bp) | 930 |
| Protein length (aa) | 310 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02104 | SURF1 | SURF1 family | 5.4E-54 | 74 | 282 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y810|SHY1_SCHPO | Cytochrome oxidase assembly protein shy1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=shy1 PE=3 SV=1 | 70 | 298 | 6.0E-60 |
| sp|P09925|SURF1_MOUSE | Surfeit locus protein 1 OS=Mus musculus GN=Surf1 PE=1 SV=3 | 70 | 289 | 6.0E-48 |
| sp|Q9QXU2|SURF1_RAT | Surfeit locus protein 1 OS=Rattus norvegicus GN=Surf1 PE=2 SV=1 | 70 | 289 | 4.0E-45 |
| sp|Q15526|SURF1_HUMAN | Surfeit locus protein 1 OS=Homo sapiens GN=SURF1 PE=1 SV=1 | 70 | 289 | 6.0E-44 |
| sp|Q800L1|SURF1_CHICK | Surfeit locus protein 1 OS=Gallus gallus GN=SURF1 PE=3 SV=1 | 71 | 289 | 2.0E-42 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y810|SHY1_SCHPO | Cytochrome oxidase assembly protein shy1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=shy1 PE=3 SV=1 | 70 | 298 | 6.0E-60 |
| sp|P09925|SURF1_MOUSE | Surfeit locus protein 1 OS=Mus musculus GN=Surf1 PE=1 SV=3 | 70 | 289 | 6.0E-48 |
| sp|Q9QXU2|SURF1_RAT | Surfeit locus protein 1 OS=Rattus norvegicus GN=Surf1 PE=2 SV=1 | 70 | 289 | 4.0E-45 |
| sp|Q15526|SURF1_HUMAN | Surfeit locus protein 1 OS=Homo sapiens GN=SURF1 PE=1 SV=1 | 70 | 289 | 6.0E-44 |
| sp|Q800L1|SURF1_CHICK | Surfeit locus protein 1 OS=Gallus gallus GN=SURF1 PE=3 SV=1 | 71 | 289 | 2.0E-42 |
| sp|A4IHH4|SURF1_XENTR | Surfeit locus protein 1 OS=Xenopus tropicalis GN=surf1 PE=2 SV=1 | 28 | 300 | 2.0E-41 |
| sp|O57593|SURF1_TAKRU | Surfeit locus protein 1 (Fragment) OS=Takifugu rubripes GN=surf1 PE=3 SV=1 | 70 | 289 | 3.0E-41 |
| sp|Q9U4F3|SURF1_DROME | SURF1-like protein OS=Drosophila melanogaster GN=Surf1 PE=2 SV=1 | 70 | 294 | 5.0E-39 |
| sp|A8Y2C9|SURF1_CAEBR | SURF1-like protein OS=Caenorhabditis briggsae GN=sft-1 PE=3 SV=1 | 65 | 294 | 1.0E-36 |
| sp|A9UWF0|SURF1_MONBE | SURF1-like protein OS=Monosiga brevicollis GN=18583 PE=3 SV=1 | 62 | 294 | 3.0E-36 |
| sp|Q9N5N8|SURF1_CAEEL | SURF1-like protein OS=Caenorhabditis elegans GN=sft-1 PE=3 SV=1 | 66 | 294 | 3.0E-35 |
| sp|P53266|SHY1_YEAST | Cytochrome oxidase assembly protein SHY1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHY1 PE=1 SV=1 | 59 | 255 | 6.0E-33 |
| sp|Q556J9|SURF1_DICDI | SURF1-like protein OS=Dictyostelium discoideum GN=surf1-1 PE=3 SV=2 | 63 | 294 | 1.0E-30 |
| sp|Q1RJM4|SURF1_RICBR | SURF1-like protein OS=Rickettsia bellii (strain RML369-C) GN=RBE_0359 PE=3 SV=1 | 69 | 298 | 8.0E-18 |
| sp|Q9SE51|SURF1_ARATH | Surfeit locus protein 1 OS=Arabidopsis thaliana GN=SURF1 PE=2 SV=1 | 69 | 293 | 2.0E-16 |
| sp|Q4UN32|SURF1_RICFE | SURF1-like protein OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0175 PE=3 SV=1 | 70 | 299 | 1.0E-15 |
| sp|Q92GL0|SURF1_RICCN | SURF1-like protein OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC1113 PE=3 SV=1 | 70 | 299 | 3.0E-13 |
| sp|Q9ZCJ8|SURF1_RICPR | SURF1-like protein OS=Rickettsia prowazekii (strain Madrid E) GN=RP733 PE=3 SV=1 | 68 | 297 | 4.0E-08 |
| sp|P66884|Y2259_MYCBO | Uncharacterized SURF1-like protein Mb2259 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb2259 PE=3 SV=1 | 68 | 256 | 8.0E-07 |
| sp|P9WGA7|Y2235_MYCTU | Uncharacterized SURF1-like protein Rv2235 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv2235 PE=1 SV=1 | 68 | 256 | 8.0E-07 |
| sp|P9WGA6|Y2235_MYCTO | Uncharacterized SURF1-like protein MT2294 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT2294 PE=3 SV=1 | 68 | 256 | 8.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 64 | 86 | 22 |
| 2 | 273 | 292 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|3995 MKMLRCCASRSARLPSLRFAPTRPPAPFCTTSRRRAGSKQPADDAGFVSVLDASPRIVRSGRRHGAGIILLALIP LTAFALGTWQVQRLGWKTQLMAKLEDRLVRPPLPLPPHVDPAAVHDFDYRRVVAVGHFRHDQEMLIGPRMRDGKD GYMVITPLERKDASKILVNRGWISKDRGDQATRPDSLPQGQVVVQGLLREPWKKNMFTPDNRPEKGHFYFPDVNQ MAALTGSQPVWIEVTMEPEFMKLIDYEARGVPYGRPAEVNLRNNHAQYIFTWYGLCAATSVMLYMVLKKPASSVA KRVQNGASF* |
| Coding | >OphauG2|3995 ATGAAGATGCTGCGGTGCTGTGCATCTCGAAGCGCCCGCCTCCCGAGCTTGAGATTTGCCCCGACTCGCCCACCA GCTCCATTTTGCACCACGTCAAGACGTCGAGCCGGCTCCAAGCAGCCCGCCGACGACGCCGGCTTTGTATCAGTC CTCGACGCGTCGCCTCGCATCGTCCGCAGTGGCCGCCGACATGGCGCCGGCATCATACTCCTTGCCCTCATTCCG CTCACCGCCTTTGCCCTGGGCACCTGGCAGGTGCAGCGCCTTGGCTGGAAGACGCAGCTCATGGCCAAGCTGGAG GATCGCCTTGTGCGCCCGCCTCTTCCCCTGCCGCCGCACGTCGATCCCGCTGCCGTGCATGACTTTGACTACCGC CGCGTAGTCGCCGTCGGCCACTTTCGCCACGATCAAGAAATGCTCATCGGCCCGCGCATGCGAGACGGCAAGGAC GGATACATGGTCATCACCCCACTTGAGCGCAAAGACGCCAGCAAAATTCTTGTCAATCGCGGATGGATCAGCAAG GACCGTGGCGACCAAGCAACTCGACCCGACTCGTTACCCCAAGGCCAAGTTGTTGTCCAAGGCCTGCTACGTGAG CCGTGGAAGAAGAACATGTTTACACCCGACAACAGGCCCGAAAAGGGCCACTTTTATTTTCCTGATGTCAATCAA ATGGCTGCTCTAACCGGGAGCCAGCCCGTGTGGATTGAGGTTACCATGGAGCCCGAATTTATGAAACTCATCGAC TACGAGGCTCGCGGTGTTCCATATGGACGGCCTGCAGAAGTCAATCTGCGAAATAATCATGCCCAGTACATTTTC ACCTGGTACGGCCTCTGTGCCGCCACGTCAGTTATGCTGTACATGGTCCTCAAGAAGCCAGCCTCTAGTGTGGCC AAAAGGGTGCAGAATGGCGCATCCTTCTAA |
| Transcript | >OphauG2|3995 ATGAAGATGCTGCGGTGCTGTGCATCTCGAAGCGCCCGCCTCCCGAGCTTGAGATTTGCCCCGACTCGCCCACCA GCTCCATTTTGCACCACGTCAAGACGTCGAGCCGGCTCCAAGCAGCCCGCCGACGACGCCGGCTTTGTATCAGTC CTCGACGCGTCGCCTCGCATCGTCCGCAGTGGCCGCCGACATGGCGCCGGCATCATACTCCTTGCCCTCATTCCG CTCACCGCCTTTGCCCTGGGCACCTGGCAGGTGCAGCGCCTTGGCTGGAAGACGCAGCTCATGGCCAAGCTGGAG GATCGCCTTGTGCGCCCGCCTCTTCCCCTGCCGCCGCACGTCGATCCCGCTGCCGTGCATGACTTTGACTACCGC CGCGTAGTCGCCGTCGGCCACTTTCGCCACGATCAAGAAATGCTCATCGGCCCGCGCATGCGAGACGGCAAGGAC GGATACATGGTCATCACCCCACTTGAGCGCAAAGACGCCAGCAAAATTCTTGTCAATCGCGGATGGATCAGCAAG GACCGTGGCGACCAAGCAACTCGACCCGACTCGTTACCCCAAGGCCAAGTTGTTGTCCAAGGCCTGCTACGTGAG CCGTGGAAGAAGAACATGTTTACACCCGACAACAGGCCCGAAAAGGGCCACTTTTATTTTCCTGATGTCAATCAA ATGGCTGCTCTAACCGGGAGCCAGCCCGTGTGGATTGAGGTTACCATGGAGCCCGAATTTATGAAACTCATCGAC TACGAGGCTCGCGGTGTTCCATATGGACGGCCTGCAGAAGTCAATCTGCGAAATAATCATGCCCAGTACATTTTC ACCTGGTACGGCCTCTGTGCCGCCACGTCAGTTATGCTGTACATGGTCCTCAAGAAGCCAGCCTCTAGTGTGGCC AAAAGGGTGCAGAATGGCGCATCCTTCTAA |
| Gene | >OphauG2|3995 ATGAAGATGCTGCGGTGCTGTGCATCTCGAAGCGCCCGCCTCCCGAGCTTGAGATTTGCCCCGACTCGCCCACCA GCTCCATTTTGCACCACGTCAAGACGTCGAGCCGGCTCCAAGCAGCCCGCCGACGACGCCGGCTTTGTATCAGTC CTCGACGCGTCGCCTCGCATCGTCCGCAGTGGCCGCCGACATGGCGCCGGCATCATACTCCTTGGTGTGTCTTGT GTCTTGAACTCTAGACCTGGCGCTCCCAGGCCCTGAGCTAAGCCTTGCCTGCGCTTGCACAGCCCTCATTCCGCT CACCGCCTTTGCCCTGGGCACCTGGCAGGTGCAGCGCCTTGGCTGGAAGACGCAGCTCATGGCCAAGCTGGAGGA TCGCCTTGTGCGCCCGCCTCTTCCCCTGCCGCCGCACGTCGATCCCGCTGCCGTGCATGACTTTGACTACCGCCG CGTAGTCGCCGTCGGCCACTTTCGCCACGATCAAGAAATGCTCATCGGCCCGCGCATGCGAGACGGCAAGGACGG ATACATGGTCATCACCCCACTTGAGCGCAAAGACGCCAGCAAAATTCTTGTCAATCGCGGATGGATCAGCAAGGA CCGTGGCGACCAAGCAACTCGACCCGACTCGTTACCCCAAGGCCAAGTTGTTGTCCAAGGCCTGCTACGTGAGCC GTGGAAGAAGAACATGTTTACACCCGACAACAGGCCCGAAAAGGGCCACTTTTATTTTCCTGATGTCAATCAAAT GGCTGCTCTAACCGGGAGCCAGCCCGTGTGGATTGAGGTTACCATGGGTTATTCATTCTCATTTCTTTGTTGACG CTGGCTTTTTGCACTTACACCATGACAGAGCCCGAATTTATGAAACTCATCGACTACGAGGCTCGCGGTGTTCCA TATGGACGGCCTGCAGAAGTCAATCTGCGAAATAATCATGCCCAGTACATTTTCACCTGGTATGTCTGGGCCCAT CATGCTTTTGCCTGCGCCGCCAATGCAGTTGACGCTTAGTCTGCTAGGTACGGCCTCTGTGCCGCCACGTCAGTT ATGCTGTACATGGTCCTCAAGAAGCCAGCCTCTAGTGTGGCCAAAAGGGTGCAGAATGGCGCATCCTTCTAA |