© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|3967 |
| Gene name | |
| Location | Contig_314:9404..11286 |
| Strand | + |
| Gene length (bp) | 1882 |
| Transcript length (bp) | 1695 |
| Coding sequence length (bp) | 1695 |
| Protein length (aa) | 565 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00013 | KH_1 | KH domain | 5.2E-13 | 190 | 253 |
| PF00013 | KH_1 | KH domain | 3.9E-15 | 288 | 352 |
| PF00013 | KH_1 | KH domain | 1.1E-14 | 401 | 463 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q99PF5|FUBP2_RAT | Far upstream element-binding protein 2 OS=Rattus norvegicus GN=Khsrp PE=1 SV=1 | 189 | 469 | 6.0E-27 |
| sp|Q3U0V1|FUBP2_MOUSE | Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp PE=1 SV=2 | 189 | 469 | 7.0E-27 |
| sp|Q8UVD9|FUBP2_CHICK | Far upstream element-binding protein 2 OS=Gallus gallus GN=KHSRP PE=1 SV=1 | 189 | 469 | 7.0E-26 |
| sp|Q96I24|FUBP3_HUMAN | Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3 PE=1 SV=2 | 189 | 473 | 1.0E-24 |
| sp|Q92945|FUBP2_HUMAN | Far upstream element-binding protein 2 OS=Homo sapiens GN=KHSRP PE=1 SV=4 | 93 | 469 | 3.0E-23 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q99PF5|FUBP2_RAT | Far upstream element-binding protein 2 OS=Rattus norvegicus GN=Khsrp PE=1 SV=1 | 189 | 469 | 6.0E-27 |
| sp|Q3U0V1|FUBP2_MOUSE | Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp PE=1 SV=2 | 189 | 469 | 7.0E-27 |
| sp|Q8UVD9|FUBP2_CHICK | Far upstream element-binding protein 2 OS=Gallus gallus GN=KHSRP PE=1 SV=1 | 189 | 469 | 7.0E-26 |
| sp|Q96I24|FUBP3_HUMAN | Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3 PE=1 SV=2 | 189 | 473 | 1.0E-24 |
| sp|Q92945|FUBP2_HUMAN | Far upstream element-binding protein 2 OS=Homo sapiens GN=KHSRP PE=1 SV=4 | 93 | 469 | 3.0E-23 |
| sp|Q96AE4|FUBP1_HUMAN | Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=1 SV=3 | 189 | 469 | 4.0E-23 |
| sp|Q91WJ8|FUBP1_MOUSE | Far upstream element-binding protein 1 OS=Mus musculus GN=Fubp1 PE=1 SV=1 | 189 | 437 | 1.0E-22 |
| sp|Q32PX7|FUBP1_RAT | Far upstream element-binding protein 1 OS=Rattus norvegicus GN=Fubp1 PE=1 SV=1 | 189 | 437 | 1.0E-22 |
| sp|Q96I24|FUBP3_HUMAN | Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3 PE=1 SV=2 | 186 | 465 | 1.0E-12 |
| sp|Q9LZ82|BTR1_ARATH | Protein BTR1 OS=Arabidopsis thaliana GN=BTR1 PE=1 SV=1 | 200 | 472 | 2.0E-11 |
| sp|Q96AE4|FUBP1_HUMAN | Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=1 SV=3 | 190 | 465 | 4.0E-11 |
| sp|Q91WJ8|FUBP1_MOUSE | Far upstream element-binding protein 1 OS=Mus musculus GN=Fubp1 PE=1 SV=1 | 190 | 465 | 6.0E-11 |
| sp|Q0VCU0|PCBP4_BOVIN | Poly(rC)-binding protein 4 OS=Bos taurus GN=PCBP4 PE=2 SV=1 | 199 | 477 | 2.0E-10 |
| sp|Q32PX7|FUBP1_RAT | Far upstream element-binding protein 1 OS=Rattus norvegicus GN=Fubp1 PE=1 SV=1 | 190 | 465 | 2.0E-10 |
| sp|P57724|PCBP4_MOUSE | Poly(rC)-binding protein 4 OS=Mus musculus GN=Pcbp4 PE=1 SV=1 | 199 | 477 | 3.0E-10 |
| sp|Q9Y2W6|TDRKH_HUMAN | Tudor and KH domain-containing protein OS=Homo sapiens GN=TDRKH PE=1 SV=2 | 184 | 357 | 5.0E-10 |
| sp|P57723|PCBP4_HUMAN | Poly(rC)-binding protein 4 OS=Homo sapiens GN=PCBP4 PE=2 SV=1 | 199 | 474 | 8.0E-10 |
| sp|Q80VL1|TDRKH_MOUSE | Tudor and KH domain-containing protein OS=Mus musculus GN=Tdrkh PE=1 SV=1 | 192 | 357 | 1.0E-09 |
| sp|Q96AE4|FUBP1_HUMAN | Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1 PE=1 SV=3 | 199 | 360 | 2.0E-09 |
| sp|Q9Y2W6|TDRKH_HUMAN | Tudor and KH domain-containing protein OS=Homo sapiens GN=TDRKH PE=1 SV=2 | 284 | 471 | 2.0E-09 |
| sp|Q91WJ8|FUBP1_MOUSE | Far upstream element-binding protein 1 OS=Mus musculus GN=Fubp1 PE=1 SV=1 | 199 | 360 | 5.0E-09 |
| sp|Q32PX7|FUBP1_RAT | Far upstream element-binding protein 1 OS=Rattus norvegicus GN=Fubp1 PE=1 SV=1 | 199 | 360 | 5.0E-09 |
| sp|Q8UVD9|FUBP2_CHICK | Far upstream element-binding protein 2 OS=Gallus gallus GN=KHSRP PE=1 SV=1 | 184 | 466 | 5.0E-09 |
| sp|Q2PFW9|NOVA1_MACFA | RNA-binding protein Nova-1 OS=Macaca fascicularis GN=NOVA1 PE=2 SV=1 | 162 | 357 | 3.0E-08 |
| sp|Q80WA4|NOVA1_RAT | RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus GN=Nova1 PE=2 SV=1 | 162 | 357 | 4.0E-08 |
| sp|Q3U0V1|FUBP2_MOUSE | Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp PE=1 SV=2 | 184 | 466 | 6.0E-08 |
| sp|Q99PF5|FUBP2_RAT | Far upstream element-binding protein 2 OS=Rattus norvegicus GN=Khsrp PE=1 SV=1 | 184 | 466 | 9.0E-08 |
| sp|Q92945|FUBP2_HUMAN | Far upstream element-binding protein 2 OS=Homo sapiens GN=KHSRP PE=1 SV=4 | 184 | 466 | 1.0E-07 |
| sp|Q96I24|FUBP3_HUMAN | Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3 PE=1 SV=2 | 177 | 321 | 2.0E-07 |
| sp|Q9SR13|FLK_ARATH | Flowering locus K homology domain OS=Arabidopsis thaliana GN=FLK PE=1 SV=1 | 194 | 350 | 2.0E-07 |
| sp|Q9JKN6|NOVA1_MOUSE | RNA-binding protein Nova-1 OS=Mus musculus GN=Nova1 PE=1 SV=2 | 162 | 357 | 4.0E-07 |
| sp|Q5RB68|IF2B2_PONAB | Insulin-like growth factor 2 mRNA-binding protein 2 OS=Pongo abelii GN=IGF2BP2 PE=2 SV=1 | 192 | 449 | 1.0E-06 |
| sp|Q61990|PCBP2_MOUSE | Poly(rC)-binding protein 2 OS=Mus musculus GN=Pcbp2 PE=1 SV=1 | 288 | 470 | 1.0E-06 |
| sp|Q15366|PCBP2_HUMAN | Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=1 SV=1 | 288 | 470 | 1.0E-06 |
| sp|P51513|NOVA1_HUMAN | RNA-binding protein Nova-1 OS=Homo sapiens GN=NOVA1 PE=1 SV=1 | 162 | 357 | 1.0E-06 |
| sp|O19048|PCBP1_RABIT | Poly(rC)-binding protein 1 OS=Oryctolagus cuniculus GN=PCBP1 PE=2 SV=1 | 288 | 457 | 5.0E-06 |
| sp|P60335|PCBP1_MOUSE | Poly(rC)-binding protein 1 OS=Mus musculus GN=Pcbp1 PE=1 SV=1 | 288 | 457 | 5.0E-06 |
| sp|Q15365|PCBP1_HUMAN | Poly(rC)-binding protein 1 OS=Homo sapiens GN=PCBP1 PE=1 SV=2 | 288 | 457 | 5.0E-06 |
| sp|Q5E9A3|PCBP1_BOVIN | Poly(rC)-binding protein 1 OS=Bos taurus GN=PCBP1 PE=2 SV=1 | 288 | 457 | 5.0E-06 |
| sp|P57721|PCBP3_HUMAN | Poly(rC)-binding protein 3 OS=Homo sapiens GN=PCBP3 PE=2 SV=2 | 199 | 360 | 9.0E-06 |
| sp|P57722|PCBP3_MOUSE | Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=1 SV=3 | 199 | 360 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|3967 MAEPQPDIQSILAALASQRGPTQTPSQQPPGASAPAYPAPSASAPPPGSYPHPPPPGLPSYGGPAHHGLPAPASS GNVDLSALRPVNSGTLNFEDIMSQARAYAAGKGATPYDRPLTYNADPRSAERSYRTSRSRSPRTDYHRDERRGGH GREHGRDRSYSPPPRGRPFSPRAGSTRDRSPLRGADENSETIQIEASLVGLIIGRQGENLRRIESESNCRVQFLA ATDGGPFRQCRISGPRQRRAEVKAAIDRIIEDSGMGPLNRVPDKSRDTNRAGTAGLRDGEDHIQIMVPDRTVGLI IGRGGETIRDLQERSGCHINIVGESKSVNGLRPVNLIGTVEATSRAKDFIMEIVDSDTRGDGPAGKKAVATVTVG GGISGHADIPSSVREAGGNDKINDAIYVPSDAVGMIIGRGGETIREMQNATGCKINVAQSSGPGEVQREIALIGA RDSIARAKMAIEEKVEAVRQKSGGGGGGSGGGGGGRGRGYQDVDRGPGGSYAQQSANASATANQTPQASTGDGPD PYAQYGGYQNYLALWYQSLMYQQQQQQQQGGQGAPAPGA* |
| Coding | >OphauG2|3967 ATGGCAGAGCCTCAACCAGATATCCAATCCATTCTTGCTGCACTTGCATCCCAGCGTGGCCCAACGCAGACGCCA AGCCAGCAGCCTCCCGGCGCATCGGCACCTGCATACCCTGCTCCATCTGCTTCAGCGCCACCGCCTGGCTCCTAC CCCCACCCTCCGCCCCCTGGCCTGCCTTCGTATGGCGGCCCAGCCCATCATGGCTTACCTGCCCCGGCTTCAAGC GGCAATGTCGACTTGAGCGCCCTTCGTCCTGTAAACTCGGGGACCCTAAACTTTGAAGACATCATGTCACAAGCA CGAGCCTACGCAGCCGGAAAAGGAGCCACTCCATACGATCGCCCCCTCACCTATAATGCCGATCCTCGAAGCGCG GAGCGATCCTACCGGACCTCAAGATCCCGATCCCCCCGGACAGATTACCACAGAGACGAACGTCGCGGTGGTCAC GGTCGCGAACACGGCCGCGATCGATCATATTCTCCTCCGCCCCGCGGTCGCCCCTTTTCGCCCCGCGCGGGGAGC ACCCGGGATAGATCACCTCTGCGAGGCGCTGACGAGAACTCGGAGACAATTCAAATCGAGGCCAGCCTCGTCGGC CTAATTATTGGTCGCCAAGGCGAGAACCTTCGACGCATTGAATCCGAGTCCAACTGTAGGGTGCAGTTTCTTGCT GCCACAGACGGAGGTCCTTTTAGACAATGCAGAATATCTGGACCGCGGCAACGTCGTGCCGAGGTCAAGGCAGCC ATTGATCGTATCATTGAGGATAGTGGCATGGGTCCCCTGAACCGAGTGCCAGACAAGTCACGAGACACCAATAGG GCAGGCACAGCTGGCCTCCGAGACGGCGAAGATCACATTCAAATTATGGTGCCAGATCGCACTGTTGGCCTAATC ATCGGTCGTGGAGGTGAAACTATTCGAGACCTCCAAGAACGTTCAGGATGTCACATAAACATTGTTGGAGAGTCC AAAAGTGTCAATGGCCTCCGACCAGTAAATCTAATAGGCACCGTCGAAGCTACATCTCGTGCCAAGGACTTCATC ATGGAGATTGTCGATAGTGATACAAGAGGAGATGGTCCTGCTGGAAAGAAGGCGGTTGCCACCGTCACCGTTGGC GGTGGAATAAGCGGGCACGCCGACATACCTAGTTCCGTGAGGGAAGCCGGCGGAAACGACAAGATCAATGATGCC ATATATGTTCCTTCAGATGCTGTTGGAATGATTATTGGAAGAGGTGGCGAAACTATTCGCGAGATGCAAAACGCC ACAGGGTGCAAAATCAACGTGGCCCAGTCCTCAGGCCCAGGAGAAGTGCAGAGAGAGATTGCTCTTATTGGTGCA CGCGATAGTATAGCTCGCGCTAAAATGGCCATCGAGGAAAAGGTTGAAGCAGTGCGCCAGAAAAGCGGTGGCGGC GGCGGCGGCAGCGGCGGCGGCGGTGGTGGTCGTGGACGGGGCTACCAAGACGTGGACCGAGGTCCTGGCGGTTCA TATGCGCAACAAAGCGCCAATGCGTCTGCCACAGCTAACCAGACGCCTCAGGCGTCGACAGGTGATGGCCCTGAT CCGTATGCACAATACGGCGGATACCAGAACTATCTTGCTCTCTGGTACCAGTCATTAATGTACCAGCAACAGCAG CAGCAACAGCAAGGCGGACAAGGGGCACCCGCTCCTGGGGCCTAG |
| Transcript | >OphauG2|3967 ATGGCAGAGCCTCAACCAGATATCCAATCCATTCTTGCTGCACTTGCATCCCAGCGTGGCCCAACGCAGACGCCA AGCCAGCAGCCTCCCGGCGCATCGGCACCTGCATACCCTGCTCCATCTGCTTCAGCGCCACCGCCTGGCTCCTAC CCCCACCCTCCGCCCCCTGGCCTGCCTTCGTATGGCGGCCCAGCCCATCATGGCTTACCTGCCCCGGCTTCAAGC GGCAATGTCGACTTGAGCGCCCTTCGTCCTGTAAACTCGGGGACCCTAAACTTTGAAGACATCATGTCACAAGCA CGAGCCTACGCAGCCGGAAAAGGAGCCACTCCATACGATCGCCCCCTCACCTATAATGCCGATCCTCGAAGCGCG GAGCGATCCTACCGGACCTCAAGATCCCGATCCCCCCGGACAGATTACCACAGAGACGAACGTCGCGGTGGTCAC GGTCGCGAACACGGCCGCGATCGATCATATTCTCCTCCGCCCCGCGGTCGCCCCTTTTCGCCCCGCGCGGGGAGC ACCCGGGATAGATCACCTCTGCGAGGCGCTGACGAGAACTCGGAGACAATTCAAATCGAGGCCAGCCTCGTCGGC CTAATTATTGGTCGCCAAGGCGAGAACCTTCGACGCATTGAATCCGAGTCCAACTGTAGGGTGCAGTTTCTTGCT GCCACAGACGGAGGTCCTTTTAGACAATGCAGAATATCTGGACCGCGGCAACGTCGTGCCGAGGTCAAGGCAGCC ATTGATCGTATCATTGAGGATAGTGGCATGGGTCCCCTGAACCGAGTGCCAGACAAGTCACGAGACACCAATAGG GCAGGCACAGCTGGCCTCCGAGACGGCGAAGATCACATTCAAATTATGGTGCCAGATCGCACTGTTGGCCTAATC ATCGGTCGTGGAGGTGAAACTATTCGAGACCTCCAAGAACGTTCAGGATGTCACATAAACATTGTTGGAGAGTCC AAAAGTGTCAATGGCCTCCGACCAGTAAATCTAATAGGCACCGTCGAAGCTACATCTCGTGCCAAGGACTTCATC ATGGAGATTGTCGATAGTGATACAAGAGGAGATGGTCCTGCTGGAAAGAAGGCGGTTGCCACCGTCACCGTTGGC GGTGGAATAAGCGGGCACGCCGACATACCTAGTTCCGTGAGGGAAGCCGGCGGAAACGACAAGATCAATGATGCC ATATATGTTCCTTCAGATGCTGTTGGAATGATTATTGGAAGAGGTGGCGAAACTATTCGCGAGATGCAAAACGCC ACAGGGTGCAAAATCAACGTGGCCCAGTCCTCAGGCCCAGGAGAAGTGCAGAGAGAGATTGCTCTTATTGGTGCA CGCGATAGTATAGCTCGCGCTAAAATGGCCATCGAGGAAAAGGTTGAAGCAGTGCGCCAGAAAAGCGGTGGCGGC GGCGGCGGCAGCGGCGGCGGCGGTGGTGGTCGTGGACGGGGCTACCAAGACGTGGACCGAGGTCCTGGCGGTTCA TATGCGCAACAAAGCGCCAATGCGTCTGCCACAGCTAACCAGACGCCTCAGGCGTCGACAGGTGATGGCCCTGAT CCGTATGCACAATACGGCGGATACCAGAACTATCTTGCTCTCTGGTACCAGTCATTAATGTACCAGCAACAGCAG CAGCAACAGCAAGGCGGACAAGGGGCACCCGCTCCTGGGGCCTAG |
| Gene | >OphauG2|3967 ATGGCAGAGCCTCAACCAGATATCCAATCCATTCTTGCTGCACTTGGTGAGTATTCACGCTCTGCTTATCGACGC TCAGCATGAGTTGACCCCACTTCATATCCAGCATCCCAGCGTGGCCCAACGCAGACGCCAAGCCAGCAGCCTCCC GGCGCATCGGCACCTGCATACCCTGCTCCATCTGCTTCAGCGCCACCGCCTGGCTCCTACCCCCACCCTCCGCCC CCTGGCCTGCCTTCGTATGGCGGCCCAGCCCATCATGGCTTACCTGCCCCGGCTTCAAGCGGCAATGTCGACTTG AGCGCCCTTCGTCCTGTAAACTCGGGGACCCTAAACTTTGAAGACATCATGTCACAAGCACGAGCCTACGCAGCC GGAAAAGGAGCCACTCCATACGATCGCCCCCTCACCTATAATGCCGATCCTCGAAGCGCGGAGCGATCCTACCGG ACCTCAAGATCCCGATCCCCCCGGACAGATTACCACAGAGACGAACGTCGCGGTGGTCACGGTCGCGAACACGGC CGCGATCGATCATATTCTCCTCCGCCCCGCGGTCGCCCCTTTTCGCCCCGCGCGGGGAGCACCCGGGATAGATCA CCTCTGCGAGGCGCTGACGAGAACTCGGAGACAATTCAAATCGAGGCCAGCCTCGTCGGCCTAATTATTGGTCGC CAAGGCGAGAACCTTCGACGCATTGAATCCGAGTCCAACTGTAGGGTGCAGTTTCTTGCTGCCACAGACGGAGGT CCTTTTAGACAATGCAGAATATCTGGACCGCGGCAACGTCGTGCCGAGGTCAAGGCAGCCATTGATCGTATCATT GAGGATAGTGGCATGGGTCCCCTGAACCGAGTGCCAGACAAGTCACGAGACACCAATAGGGCAGGCACAGCTGGC CTCCGAGACGGCGAAGATCACATTCAAATTATGGTGCCAGATCGCACTGTTGGCCTAATCATCGGTCGTGGAGGT GAAACTATTCGAGACCTCCAAGAACGTTCAGGATGTCACATAAACATTGTTGGAGAGTCCAAAAGTGTCAATGGC CTCCGACCAGTAAATCTAATAGGCACCGTCGAAGCTACATCTCGTGCCAAGGACTTCATCATGGAGATTGTCGAT AGTGATACAAGAGGAGATGGTCCTGCTGGAAAGAAGGCGGTTGCCACCGTCACCGTTGGCGGTGGAATAAGCGGG CACGCCGACATACCTAGTTCCGTGAGGGAAGCCGGCGGAAACGACAAGATCAATGATGCCATATATGTTCCTTCA GATGCTGTTGGAATGATTATTGGAAGAGGTGGCGAAACTATTCGCGAGATGCAAAACGCCACAGGGTGCAAAATC AACGTGGCCCAGTCCTCAGGCCCAGGAGAAGTGCAGAGAGAGATTGCTCTTATTGGTGCACGCGATAGTATAGCT CGCGCTAAAATGGCCATCGAGGAAAAGGTTGAAGCAGTGGTACGTCAAGTTGTCATGGCATTTACGCGAGGACCT TGTCTGTAGAGTTTGCTGACTGACAAACCTGCAGCGCCAGAAAAGCGGTGGCGGCGGCGGCGGCAGCGGCGGCGG CGGTGGTGGTCGTGGACGGGGCTACCAAGACGTGGACCGAGGTCCTGGCGGTTCATATGCGCAACAAAGCGCCAA TGCGTCTGCCACAGCTAACCAGACGCCTCAGGCGTCGACAGGTGATGGCCCTGATCCGTATGCACAATGTGAGTG ACGGCCATGACATGATGGACCGGAATGGGCAAGCTGACACGAAATTGCAGACGGCGGATACCAGAACTATCTTGC TCTCTGGTACCAGTCATTAATGTACCAGCAACAGCAGCAGCAACAGCAAGGCGGACAAGGGGCACCCGCTCCTGG GGCCTAG |