Protein ID | OphauG2|3919 |
Gene name | |
Location | Contig_308:14156..16053 |
Strand | + |
Gene length (bp) | 1897 |
Transcript length (bp) | 1698 |
Coding sequence length (bp) | 1698 |
Protein length (aa) | 566 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF02136 | NTF2 | Nuclear transport factor 2 (NTF2) domain | 2.3E-23 | 44 | 159 |
PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.4E-05 | 437 | 498 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O94260|G3BP_SCHPO | Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1 | 29 | 162 | 4.0E-40 |
sp|Q5R9L3|G3BP2_PONAB | Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii GN=G3BP2 PE=2 SV=1 | 44 | 162 | 1.0E-21 |
sp|Q9UN86|G3BP2_HUMAN | Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens GN=G3BP2 PE=1 SV=2 | 44 | 162 | 1.0E-21 |
sp|P97379|G3BP2_MOUSE | Ras GTPase-activating protein-binding protein 2 OS=Mus musculus GN=G3bp2 PE=1 SV=2 | 44 | 162 | 1.0E-21 |
sp|Q13283|G3BP1_HUMAN | Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens GN=G3BP1 PE=1 SV=1 | 44 | 497 | 8.0E-20 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O94260|G3BP_SCHPO | Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1 | 29 | 162 | 4.0E-40 |
sp|Q5R9L3|G3BP2_PONAB | Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii GN=G3BP2 PE=2 SV=1 | 44 | 162 | 1.0E-21 |
sp|Q9UN86|G3BP2_HUMAN | Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens GN=G3BP2 PE=1 SV=2 | 44 | 162 | 1.0E-21 |
sp|P97379|G3BP2_MOUSE | Ras GTPase-activating protein-binding protein 2 OS=Mus musculus GN=G3bp2 PE=1 SV=2 | 44 | 162 | 1.0E-21 |
sp|Q13283|G3BP1_HUMAN | Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens GN=G3BP1 PE=1 SV=1 | 44 | 497 | 8.0E-20 |
sp|Q5RB87|G3BP1_PONAB | Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii GN=G3BP1 PE=2 SV=1 | 44 | 162 | 1.0E-19 |
sp|Q32LC7|G3BP1_BOVIN | Ras GTPase-activating protein-binding protein 1 OS=Bos taurus GN=G3BP PE=2 SV=1 | 44 | 162 | 1.0E-19 |
sp|P97855|G3BP1_MOUSE | Ras GTPase-activating protein-binding protein 1 OS=Mus musculus GN=G3bp1 PE=1 SV=1 | 44 | 162 | 2.0E-19 |
sp|Q6CC82|NTF2_YARLI | Nuclear transport factor 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NTF2 PE=3 SV=1 | 42 | 158 | 3.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003723 | RNA binding | Yes |
GO:0003674 | molecular_function | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0005488 | binding | No |
GO:0003676 | nucleic acid binding | No |
GO:0097159 | organic cyclic compound binding | No |
Orthofinder run ID | 4 |
Orthogroup | 2682 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >OphauG2|3919 MATNGSFALQDQYKTSAEPYGAPATTGDATNAATANSNLSKDEVAWYFVEQYYTTLSKSPEKLHLFYGKRSQFVY GLEAEIANVAVGRQAIQDRIKVLDFQDCKVRISNVDSQASFDNIVIQVIGETSNKAAEPKKYVQTFVLAQQPSGY FVLNDILRYIDEGTEEIAEPVPATIAICPEDQAGASDAPLAVDDTSSHPVAISEGNNDLDTSVIDQKLEKVSQTD AKANGDDAQASTEATKAPEIKAAEPAPVPVMDPDVTAQELAEEDAKESEKPQEPNPTPVSVVKSASLAQPAIQPL SEPAAPQATTQPAAPPTTSEPAPPPKPMTWASRAAAAAGPRPVVPLPKTATPPSQNTSRAPNAAAPSATAAPASA TATPQPSTQPSTTAALAKVPAPAADASKETSGWQTAGADSKRQNRPHSMSGNLTDKDGTMGYVKYVTDKVVEADL RNELAAHGELTYFDINRQKNCAFVEYKTIEGYQAAVSKNPHIVNGETIIVEPRRPKTTGYGGPNYARGNISGRGR GGFDGNRSSGHGGSRGSFSGQSRGRGGMPRGRGGVQANIV* |
Coding | >OphauG2|3919 ATGGCAACAAACGGAAGTTTCGCCCTACAGGATCAATATAAAACTTCTGCCGAGCCATATGGCGCTCCAGCCACC ACTGGCGATGCTACCAATGCCGCAACGGCCAATAGCAACCTGTCCAAGGATGAGGTTGCCTGGTACTTTGTTGAG CAGTACTACACCACCCTCAGCAAATCCCCTGAGAAGCTTCATCTCTTCTATGGCAAGCGCTCGCAGTTCGTCTAT GGACTAGAAGCTGAAATTGCCAACGTGGCTGTTGGTCGCCAGGCTATACAGGACCGCATCAAGGTGCTCGACTTC CAGGACTGCAAGGTCCGCATTTCCAACGTGGACTCTCAGGCGTCGTTCGACAACATTGTCATTCAGGTCATAGGT GAAACCTCCAACAAGGCTGCCGAGCCCAAGAAGTATGTCCAGACTTTTGTGCTCGCCCAGCAGCCCTCGGGCTAC TTTGTCCTCAACGACATATTGAGGTACATTGACGAAGGCACTGAAGAGATCGCCGAGCCTGTCCCTGCCACCATT GCCATTTGCCCCGAGGACCAGGCCGGCGCCTCGGACGCTCCTTTGGCTGTTGATGACACGTCTTCGCATCCAGTC GCCATTAGCGAGGGAAACAATGATTTGGATACCAGTGTTATAGACCAGAAGCTCGAAAAGGTTAGCCAGACTGAC GCCAAGGCAAATGGAGACGACGCCCAGGCCAGCACCGAAGCTACCAAGGCGCCTGAGATCAAGGCGGCCGAACCT GCCCCAGTCCCAGTGATGGATCCCGATGTTACAGCGCAAGAGCTTGCCGAAGAGGATGCCAAGGAGTCTGAGAAG CCTCAGGAACCCAATCCTACTCCTGTCTCGGTCGTCAAGTCTGCTTCCTTGGCTCAGCCGGCCATTCAACCGCTT TCTGAGCCTGCTGCTCCTCAGGCTACTACCCAGCCTGCTGCTCCTCCCACTACGTCTGAGCCCGCGCCGCCGCCC AAGCCCATGACTTGGGCAAGCCGTGCTGCGGCTGCTGCTGGCCCCCGTCCCGTTGTGCCCTTGCCCAAGACTGCC ACACCTCCCTCACAGAATACAAGTCGCGCTCCCAATGCAGCAGCCCCATCAGCTACGGCAGCACCGGCTTCCGCG ACTGCTACACCTCAACCTTCCACTCAGCCCTCCACCACTGCTGCCCTGGCAAAGGTGCCAGCGCCTGCCGCTGAT GCCTCCAAGGAAACTTCTGGTTGGCAGACGGCAGGCGCTGACTCGAAGCGCCAAAACCGCCCACATTCAATGTCG GGCAATTTGACCGATAAGGACGGTACCATGGGCTACGTCAAGTATGTGACTGACAAGGTGGTGGAAGCTGATCTT CGCAATGAGTTGGCTGCTCACGGTGAGCTTACGTATTTTGACATTAACCGCCAAAAGAATTGCGCTTTTGTGGAG TATAAGACAATTGAGGGTTACCAGGCTGCAGTTTCCAAGAACCCTCATATTGTCAATGGTGAGACCATCATTGTT GAGCCCCGGCGGCCCAAGACTACGGGATACGGAGGCCCCAACTACGCTCGAGGTAATATCTCGGGTCGCGGTAGG GGCGGCTTCGATGGAAACCGAAGCAGTGGCCACGGAGGCTCCCGAGGTAGCTTCTCGGGCCAGAGCCGAGGCCGT GGTGGGATGCCACGTGGTCGCGGCGGCGTTCAGGCAAATATTGTCTAG |
Transcript | >OphauG2|3919 ATGGCAACAAACGGAAGTTTCGCCCTACAGGATCAATATAAAACTTCTGCCGAGCCATATGGCGCTCCAGCCACC ACTGGCGATGCTACCAATGCCGCAACGGCCAATAGCAACCTGTCCAAGGATGAGGTTGCCTGGTACTTTGTTGAG CAGTACTACACCACCCTCAGCAAATCCCCTGAGAAGCTTCATCTCTTCTATGGCAAGCGCTCGCAGTTCGTCTAT GGACTAGAAGCTGAAATTGCCAACGTGGCTGTTGGTCGCCAGGCTATACAGGACCGCATCAAGGTGCTCGACTTC CAGGACTGCAAGGTCCGCATTTCCAACGTGGACTCTCAGGCGTCGTTCGACAACATTGTCATTCAGGTCATAGGT GAAACCTCCAACAAGGCTGCCGAGCCCAAGAAGTATGTCCAGACTTTTGTGCTCGCCCAGCAGCCCTCGGGCTAC TTTGTCCTCAACGACATATTGAGGTACATTGACGAAGGCACTGAAGAGATCGCCGAGCCTGTCCCTGCCACCATT GCCATTTGCCCCGAGGACCAGGCCGGCGCCTCGGACGCTCCTTTGGCTGTTGATGACACGTCTTCGCATCCAGTC GCCATTAGCGAGGGAAACAATGATTTGGATACCAGTGTTATAGACCAGAAGCTCGAAAAGGTTAGCCAGACTGAC GCCAAGGCAAATGGAGACGACGCCCAGGCCAGCACCGAAGCTACCAAGGCGCCTGAGATCAAGGCGGCCGAACCT GCCCCAGTCCCAGTGATGGATCCCGATGTTACAGCGCAAGAGCTTGCCGAAGAGGATGCCAAGGAGTCTGAGAAG CCTCAGGAACCCAATCCTACTCCTGTCTCGGTCGTCAAGTCTGCTTCCTTGGCTCAGCCGGCCATTCAACCGCTT TCTGAGCCTGCTGCTCCTCAGGCTACTACCCAGCCTGCTGCTCCTCCCACTACGTCTGAGCCCGCGCCGCCGCCC AAGCCCATGACTTGGGCAAGCCGTGCTGCGGCTGCTGCTGGCCCCCGTCCCGTTGTGCCCTTGCCCAAGACTGCC ACACCTCCCTCACAGAATACAAGTCGCGCTCCCAATGCAGCAGCCCCATCAGCTACGGCAGCACCGGCTTCCGCG ACTGCTACACCTCAACCTTCCACTCAGCCCTCCACCACTGCTGCCCTGGCAAAGGTGCCAGCGCCTGCCGCTGAT GCCTCCAAGGAAACTTCTGGTTGGCAGACGGCAGGCGCTGACTCGAAGCGCCAAAACCGCCCACATTCAATGTCG GGCAATTTGACCGATAAGGACGGTACCATGGGCTACGTCAAGTATGTGACTGACAAGGTGGTGGAAGCTGATCTT CGCAATGAGTTGGCTGCTCACGGTGAGCTTACGTATTTTGACATTAACCGCCAAAAGAATTGCGCTTTTGTGGAG TATAAGACAATTGAGGGTTACCAGGCTGCAGTTTCCAAGAACCCTCATATTGTCAATGGTGAGACCATCATTGTT GAGCCCCGGCGGCCCAAGACTACGGGATACGGAGGCCCCAACTACGCTCGAGGTAATATCTCGGGTCGCGGTAGG GGCGGCTTCGATGGAAACCGAAGCAGTGGCCACGGAGGCTCCCGAGGTAGCTTCTCGGGCCAGAGCCGAGGCCGT GGTGGGATGCCACGTGGTCGCGGCGGCGTTCAGGCAAATATTGTCTAG |
Gene | >OphauG2|3919 ATGGCAACAAACGGAAGTTTCGCCCTACAGGATCAATATAAAACTTCTGCCGAGCCATATGGCGCTCCAGCCACC ACTGGCGATGCTACCAATGCCGCAACGGCCAATAGCAACCTGTCCAAGGATGAGGTTGCCTGGTACTTTGTTGAG CAGTACTACACCACCCTCAGCAAATCCCCTGAGAAGCTTCATGTAAGCCTTCTTGACTGGCACCATCAGTCGCCA ACGCGCTGACCAACCTGCCCTTTTTATCCTGTAGCTCTTCTATGGCAAGCGCTCGCAGTTCGTCTATGGACTAGA AGCTGAAATTGCCAACGTGGCTGTTGGTCGCCAGGTACGTCTCTATCTGTCGGGCGCTGAGCCATTCTCCGCCTG ACTCTTGCTCGCCATCAAAGGCTATACAGGACCGCATCAAGGTGCTCGACTTCCAGGACTGCAAGGTCCGCATTT CCAACGTGGACTCTCAGGCGTCGTTCGACAACATTGTCATTCAGGTCATAGGTGAAACCTCCAACAAGGCTGCCG AGCCCAAGAAGTATGTCCAGACTTTTGTGCTCGCCCAGCAGCCCTCGGGCTACTTTGTCCTCAACGACATATTGA GGTACATTGACGAAGGCACTGAAGAGATCGCCGAGCCTGTCCCTGCCACCATTGCCATTTGCCCCGAGGACCAGG CCGGCGCCTCGGACGCTCCTTTGGCTGTTGATGACACGTCTTCGCATCCAGTCGCCATTAGCGAGGGAAACAATG ATTTGGATACCAGTGTTATAGACCAGAAGCTCGAAAAGGTTAGCCAGACTGACGCCAAGGCAAATGGAGACGACG CCCAGGCCAGCACCGAAGCTACCAAGGCGCCTGAGATCAAGGCGGCCGAACCTGCCCCAGTCCCAGTGATGGATC CCGATGTTACAGCGCAAGAGCTTGCCGAAGAGGATGCCAAGGAGTCTGAGAAGCCTCAGGAACCCAATCCTACTC CTGTCTCGGTCGTCAAGTCTGCTTCCTTGGCTCAGCCGGCCATTCAACCGCTTTCTGAGCCTGCTGCTCCTCAGG CTACTACCCAGCCTGCTGCTCCTCCCACTACGTCTGAGCCCGCGCCGCCGCCCAAGCCCATGACTTGGGCAAGCC GTGCTGCGGCTGCTGCTGGCCCCCGTCCCGTTGTGCCCTTGCCCAAGACTGCCACACCTCCCTCACAGAATACAA GTCGCGCTCCCAATGCAGCAGCCCCATCAGCTACGGCAGCACCGGCTTCCGCGACTGCTACACCTCAACCTTCCA CTCAGCCCTCCACCACTGCTGCCCTGGCAAAGGTGCCAGCGCCTGCCGCTGATGCCTCCAAGGAAACTTCTGGTT GGCAGACGGCAGGCGCTGACTCGAAGCGCCAAAACCGCCCACATTCAATGTCGGGCAATTTGACCGATAAGGACG GTACCATGGGCTACGTCAAGTATGTGACTGACAAGGTGGTGGAAGCTGATCTTCGCAATGAGTTGGCTGCTCACG GTGAGCTTACGTATTTTGACATTAACCGCCAAAAGGTAACACCTCCTTCTCTGCTTGTCTTGTTGGTTGTTGAGG CCAGGAGAGTCGCTGACATGGGCTTTGATAGAATTGCGCTTTTGTGGAGTATAAGACAATTGAGGGTTACCAGGC TGCAGTTTCCAAGAACCCTCATATTGTCAATGGTGAGACCATCATTGTTGAGCCCCGGCGGCCCAAGACTACGGG ATACGGAGGCCCCAACTACGCTCGAGGTAATATCTCGGGTCGCGGTAGGGGCGGCTTCGATGGAAACCGAAGCAG TGGCCACGGAGGCTCCCGAGGTAGCTTCTCGGGCCAGAGCCGAGGCCGTGGTGGGATGCCACGTGGTCGCGGCGG CGTTCAGGCAAATATTGTCTAG |