© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|390 |
| Gene name | |
| Location | Contig_109:16237..17462 |
| Strand | + |
| Gene length (bp) | 1225 |
| Transcript length (bp) | 996 |
| Coding sequence length (bp) | 996 |
| Protein length (aa) | 332 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01239 | PPTA | Protein prenyltransferase alpha subunit repeat | 1.2E-04 | 50 | 75 |
| PF01239 | PPTA | Protein prenyltransferase alpha subunit repeat | 8.8E-09 | 102 | 131 |
| PF01239 | PPTA | Protein prenyltransferase alpha subunit repeat | 1.6E-06 | 145 | 176 |
| PF01239 | PPTA | Protein prenyltransferase alpha subunit repeat | 5.4E-05 | 188 | 217 |
| PF01239 | PPTA | Protein prenyltransferase alpha subunit repeat | 2.2E-05 | 235 | 263 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q00618|PGTA_YEAST | Geranylgeranyl transferase type-2 subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET4 PE=1 SV=3 | 4 | 263 | 3.0E-49 |
| sp|O93829|PGTA_CANAX | Geranylgeranyl transferase type-2 subunit alpha OS=Candida albicans GN=BET4 PE=3 SV=1 | 4 | 283 | 2.0E-42 |
| sp|O94412|PGTA_SCHPO | Geranylgeranyl transferase type-2 subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bet4 PE=3 SV=1 | 4 | 293 | 3.0E-40 |
| sp|A5A779|PGTA_PIG | Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa GN=RABGGTA PE=2 SV=1 | 18 | 269 | 2.0E-36 |
| sp|Q5NVK5|PGTA_PONAB | Geranylgeranyl transferase type-2 subunit alpha OS=Pongo abelii GN=RABGGTA PE=2 SV=1 | 18 | 269 | 2.0E-36 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q00618|PGTA_YEAST | Geranylgeranyl transferase type-2 subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET4 PE=1 SV=3 | 4 | 263 | 3.0E-49 |
| sp|O93829|PGTA_CANAX | Geranylgeranyl transferase type-2 subunit alpha OS=Candida albicans GN=BET4 PE=3 SV=1 | 4 | 283 | 2.0E-42 |
| sp|O94412|PGTA_SCHPO | Geranylgeranyl transferase type-2 subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bet4 PE=3 SV=1 | 4 | 293 | 3.0E-40 |
| sp|A5A779|PGTA_PIG | Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa GN=RABGGTA PE=2 SV=1 | 18 | 269 | 2.0E-36 |
| sp|Q5NVK5|PGTA_PONAB | Geranylgeranyl transferase type-2 subunit alpha OS=Pongo abelii GN=RABGGTA PE=2 SV=1 | 18 | 269 | 2.0E-36 |
| sp|Q92696|PGTA_HUMAN | Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens GN=RABGGTA PE=1 SV=2 | 18 | 269 | 3.0E-36 |
| sp|Q5EA80|PGTA_BOVIN | Geranylgeranyl transferase type-2 subunit alpha OS=Bos taurus GN=RABGGTA PE=2 SV=1 | 18 | 269 | 6.0E-35 |
| sp|Q08602|PGTA_RAT | Geranylgeranyl transferase type-2 subunit alpha OS=Rattus norvegicus GN=Rabggta PE=1 SV=1 | 18 | 262 | 3.0E-34 |
| sp|Q9JHK4|PGTA_MOUSE | Geranylgeranyl transferase type-2 subunit alpha OS=Mus musculus GN=Rabggta PE=1 SV=1 | 18 | 262 | 2.0E-33 |
| sp|Q55DQ4|PGTA_DICDI | Geranylgeranyl transferase type-2 subunit alpha OS=Dictyostelium discoideum GN=rabggta PE=3 SV=2 | 4 | 266 | 6.0E-33 |
| sp|P93227|FNTA_SOLLC | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum GN=FTA PE=1 SV=1 | 42 | 263 | 3.0E-15 |
| sp|O24304|FNTA_PEA | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Pisum sativum GN=FTA PE=1 SV=1 | 42 | 265 | 1.0E-12 |
| sp|Q04631|FNTA_RAT | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Rattus norvegicus GN=Fnta PE=1 SV=1 | 49 | 263 | 3.0E-12 |
| sp|Q61239|FNTA_MOUSE | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Mus musculus GN=Fnta PE=1 SV=1 | 49 | 263 | 2.0E-11 |
| sp|P49354|FNTA_HUMAN | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Homo sapiens GN=FNTA PE=1 SV=1 | 49 | 263 | 3.0E-11 |
| sp|P29702|FNTA_BOVIN | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Bos taurus GN=FNTA PE=2 SV=2 | 49 | 263 | 8.0E-11 |
| sp|P29703|FNTA_YEAST | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAM2 PE=1 SV=1 | 10 | 258 | 1.0E-10 |
| sp|Q7Z6K3|PTAR1_HUMAN | Protein prenyltransferase alpha subunit repeat-containing protein 1 OS=Homo sapiens GN=PTAR1 PE=1 SV=2 | 50 | 227 | 1.0E-08 |
| sp|Q54RT9|FNTA_DICDI | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Dictyostelium discoideum GN=fntA PE=3 SV=1 | 49 | 208 | 8.0E-08 |
| sp|O60052|FNTA_SCHPO | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwp1 PE=1 SV=1 | 36 | 256 | 1.0E-07 |
| sp|A1L3L1|PTR1B_XENLA | Protein prenyltransferase alpha subunit repeat-containing protein 1-B (Fragment) OS=Xenopus laevis GN=ptar1-b PE=2 SV=1 | 50 | 254 | 2.0E-06 |
| sp|Q9LX33|FNTA_ARATH | Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Arabidopsis thaliana GN=FTA PE=1 SV=2 | 104 | 208 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008318 | protein prenyltransferase activity | Yes |
| GO:0018342 | protein prenylation | Yes |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0019538 | protein metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0097354 | prenylation | No |
| GO:0008152 | metabolic process | No |
| GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | No |
| GO:0043412 | macromolecule modification | No |
| GO:0009987 | cellular process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0004659 | prenyltransferase activity | No |
| GO:0036211 | protein modification process | No |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|390 MASHGVARIPQPTLTKHQREQQATKIRAYQALDHQVRTRVSAGHLDAHTFSLTTRLLQLNPEYYTIWNVRRRCLA SPSSFASSPSSRTIDPSALRLDEPSIRSELAFTIPLLLQHPKCYWIWNHRLWILDQAIKHLPAHQARSIWQDELA LVSKLLHKDRRNFHAWGYRRHVVSHLESPDLQGHSMVESEFHYTTTMISEDLSNFSAWHNRSQLIPRLLSQRAAD ATSRKDFLYAELDLVHEALNVGPEDQSLWYYHRYLLSNISGKGDIAPDLSPCHRKAYLEHDMSNIRHLCLDYDGI DSIYEALIQGTLILCKLKDQPLDSQSKQQPS* |
| Coding | >OphauG2|390 ATGGCCAGCCACGGCGTGGCACGTATCCCCCAGCCCACTCTGACCAAGCATCAACGTGAGCAACAGGCCACCAAG ATTCGTGCCTACCAAGCCCTCGATCATCAGGTGCGCACCCGTGTCTCGGCCGGCCACTTGGATGCCCACACCTTT TCCCTCACCACGCGCCTGCTGCAACTCAACCCCGAGTACTATACTATCTGGAACGTCCGCCGCCGCTGTCTCGCA TCTCCTTCTTCTTTCGCTTCCTCTCCCTCATCACGCACTATCGATCCCTCCGCTTTGCGCTTGGACGAACCTAGC ATCCGCTCTGAACTGGCATTTACAATCCCTCTGCTCCTCCAGCACCCAAAATGCTATTGGATCTGGAATCATCGT CTGTGGATCCTTGACCAGGCCATCAAGCACCTGCCTGCCCACCAAGCTCGCTCCATCTGGCAAGACGAGTTGGCC CTGGTATCAAAGTTGCTGCACAAGGATCGCCGCAATTTTCACGCCTGGGGATACCGCCGCCATGTCGTCTCTCAT CTCGAGAGCCCCGATCTGCAAGGCCATAGCATGGTCGAAAGCGAATTCCACTATACCACCACCATGATCAGTGAG GACCTCTCAAACTTTTCAGCCTGGCACAATCGAAGCCAGCTTATCCCTCGACTCCTGAGCCAGCGTGCTGCCGAT GCTACGTCTCGCAAGGATTTTCTCTATGCCGAGCTTGATCTTGTTCATGAAGCCTTGAATGTCGGTCCTGAAGAC CAATCCTTGTGGTATTATCACCGCTATCTTCTCTCAAACATTTCAGGCAAGGGCGATATTGCTCCAGACTTGTCT CCCTGCCATCGCAAGGCGTACCTTGAACATGACATGTCCAATATCCGCCATCTGTGCCTAGATTACGACGGCATT GACTCGATTTATGAGGCTCTTATACAAGGCACTCTGATTCTCTGCAAACTAAAAGACCAACCTCTTGACAGCCAA AGCAAACAACAACCCAGCTGA |
| Transcript | >OphauG2|390 ATGGCCAGCCACGGCGTGGCACGTATCCCCCAGCCCACTCTGACCAAGCATCAACGTGAGCAACAGGCCACCAAG ATTCGTGCCTACCAAGCCCTCGATCATCAGGTGCGCACCCGTGTCTCGGCCGGCCACTTGGATGCCCACACCTTT TCCCTCACCACGCGCCTGCTGCAACTCAACCCCGAGTACTATACTATCTGGAACGTCCGCCGCCGCTGTCTCGCA TCTCCTTCTTCTTTCGCTTCCTCTCCCTCATCACGCACTATCGATCCCTCCGCTTTGCGCTTGGACGAACCTAGC ATCCGCTCTGAACTGGCATTTACAATCCCTCTGCTCCTCCAGCACCCAAAATGCTATTGGATCTGGAATCATCGT CTGTGGATCCTTGACCAGGCCATCAAGCACCTGCCTGCCCACCAAGCTCGCTCCATCTGGCAAGACGAGTTGGCC CTGGTATCAAAGTTGCTGCACAAGGATCGCCGCAATTTTCACGCCTGGGGATACCGCCGCCATGTCGTCTCTCAT CTCGAGAGCCCCGATCTGCAAGGCCATAGCATGGTCGAAAGCGAATTCCACTATACCACCACCATGATCAGTGAG GACCTCTCAAACTTTTCAGCCTGGCACAATCGAAGCCAGCTTATCCCTCGACTCCTGAGCCAGCGTGCTGCCGAT GCTACGTCTCGCAAGGATTTTCTCTATGCCGAGCTTGATCTTGTTCATGAAGCCTTGAATGTCGGTCCTGAAGAC CAATCCTTGTGGTATTATCACCGCTATCTTCTCTCAAACATTTCAGGCAAGGGCGATATTGCTCCAGACTTGTCT CCCTGCCATCGCAAGGCGTACCTTGAACATGACATGTCCAATATCCGCCATCTGTGCCTAGATTACGACGGCATT GACTCGATTTATGAGGCTCTTATACAAGGCACTCTGATTCTCTGCAAACTAAAAGACCAACCTCTTGACAGCCAA AGCAAACAACAACCCAGCTGA |
| Gene | >OphauG2|390 ATGGCCAGCGTAAGTCACGCCCTGCCCGCGCCCGTGGCCAAGTCCTGCTGCTGCTCCAGCCTGCTCCTCGACCCT GCCACTCCAGCCATCCGTCAACTGATCACTTCATCCTAGCACGGCGTGGCACGTATCCCCCAGCCCACTCTGACC AAGCATCAACGTGAGCAACAGGCCACCAAGATTCGTGCCTACCAAGCCCTCGATCATCAGGTGCGCACCCGTGTC TCGGCCGGCCACTTGGATGCCCACACCTTTTCCCTCACCACGCGCCTGCTGCAACTCAACCCCGAGTACTATACT ATCTGGAACGTCCGCCGCCGCTGTCTCGCATCTCCTTCTTCTTTCGCTTCCTCTCCCTCATCACGCACTATCGAT CCCTCCGCTTTGCGCTTGGACGAACCTAGCATCCGCTCTGAACTGGCATTTACAATCCCTCTGCTCCTCCAGCAC CCAAAATGCTATTGGATCTGGAATCATCGTCTGTGGATCCTTGACCAGGCCATCAAGCACCTGCCTGCCCACCAA GCTCGCTCCATCTGGCAAGACGAGTTGGCCCTGGTATCAAAGTTGCTGCACAAGGATCGCCGCAATTTTCACGCC TGGGGATACCGCCGCCATGTCGTCTCTCATCTCGAGAGCCCCGATCTGCAAGGCCATAGCATGGTCGAAAGCGAA TTCCACTATACCACCACCATGATCAGTGAGGACCTCTCAAACTTTTCAGCCTGGCACAATCGAAGCCAGCTTATC CCTCGACTCCTGAGCCAGCGTGCTGCCGATGCTACGTCTCGCAAGGATTTTCTCTATGCCGGTAAGACGCACACG GCGCCCAATCTCAATCCGTCTAACCTCTTATGTATCGCAGAGCTTGATCTTGTTCATGAAGCCTTGAATGTCGGT CCTGAAGACCAATCCTTGTGGTATTATCACCGCTATCTTCTCTCAAACATTTCAGGCAAGGGCGATATTGCTCCA GACTTGTCTCCCTGCCATCGCAAGGCGTACCTTGAACATGACATGTCCAATATCCGCCATCTGTGCCTAGATTAC GACGGCATTGACTCGATTTATGAGGCTCTTATACAAGGCACTCTGATTCTCTGCAAACTAAAAGACCAACCTCTT GACAGCCAAAGCAAACAACAAGTTTTGCAATGGCTAGGCAAGCTGACGGAACTCGACCCCAAGCGCAACGGTCGT TGGAATGATATCAAAGCCCAGCTGA |