© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|385 |
| Gene name | |
| Location | Contig_109:9361..10193 |
| Strand | + |
| Gene length (bp) | 832 |
| Transcript length (bp) | 753 |
| Coding sequence length (bp) | 753 |
| Protein length (aa) | 251 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05739 | SNARE | SNARE domain | 2.3E-08 | 197 | 247 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P83528|STX6_CAEEL | Putative syntaxin 6 OS=Caenorhabditis elegans GN=syx-6 PE=3 SV=1 | 151 | 238 | 1.0E-07 |
| sp|Q946Y7|SYP61_ARATH | Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1 | 136 | 249 | 1.0E-07 |
| sp|Q63635|STX6_RAT | Syntaxin-6 OS=Rattus norvegicus GN=Stx6 PE=1 SV=1 | 41 | 237 | 3.0E-07 |
| sp|Q54IX6|STX8B_DICDI | Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1 | 141 | 227 | 7.0E-07 |
| sp|Q9JKK1|STX6_MOUSE | Syntaxin-6 OS=Mus musculus GN=Stx6 PE=1 SV=1 | 162 | 235 | 9.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P83528|STX6_CAEEL | Putative syntaxin 6 OS=Caenorhabditis elegans GN=syx-6 PE=3 SV=1 | 151 | 238 | 1.0E-07 |
| sp|Q946Y7|SYP61_ARATH | Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1 | 136 | 249 | 1.0E-07 |
| sp|Q63635|STX6_RAT | Syntaxin-6 OS=Rattus norvegicus GN=Stx6 PE=1 SV=1 | 41 | 237 | 3.0E-07 |
| sp|Q54IX6|STX8B_DICDI | Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1 | 141 | 227 | 7.0E-07 |
| sp|Q9JKK1|STX6_MOUSE | Syntaxin-6 OS=Mus musculus GN=Stx6 PE=1 SV=1 | 162 | 235 | 9.0E-07 |
| sp|Q5R6Q2|STX6_PONAB | Syntaxin-6 OS=Pongo abelii GN=STX6 PE=2 SV=1 | 41 | 235 | 2.0E-06 |
| sp|O43752|STX6_HUMAN | Syntaxin-6 OS=Homo sapiens GN=STX6 PE=1 SV=1 | 41 | 235 | 2.0E-06 |
| sp|O60499|STX10_HUMAN | Syntaxin-10 OS=Homo sapiens GN=STX10 PE=1 SV=1 | 162 | 235 | 3.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 25 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 232 | 249 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|385 MSKANQLFLLADHIKLSLLERQRAQSLELDSDGQDGHLARSLDQFRSGLANLEQELEGTDDEASKSAVDSLRKQL DDLTAQHQGLVDAASQATLEHANSPLLAQDFAHASTRRANKMVRFSDSPSPNPRPGLVPYRDNPGPAQSNETPDL SSQQLHDYHSQVLDEQDEQLDRLGESIGRQRELSLQIGHELDNHVAMLDEVDNAANRHQDRLDGARKTLAKVAKG AGENKQMTAIVVLIIILVVLIALLK* |
| Coding | >OphauG2|385 ATGTCCAAGGCAAATCAACTCTTCTTACTGGCAGACCACATCAAATTGTCGCTTCTTGAACGGCAGCGAGCCCAG AGCCTTGAGCTCGACAGCGATGGCCAGGATGGACACTTGGCGCGCTCGCTGGATCAATTCCGCAGCGGCCTCGCC AACCTGGAGCAAGAGCTCGAGGGCACTGACGACGAGGCCTCAAAGTCAGCCGTCGACTCGCTGCGCAAACAGCTC GACGACCTGACGGCCCAGCACCAGGGGCTTGTCGACGCAGCCTCGCAAGCCACGCTCGAGCACGCAAACTCGCCT TTGCTCGCCCAAGACTTTGCCCACGCGTCGACACGCCGAGCCAACAAGATGGTGCGCTTCAGCGATTCGCCATCG CCCAACCCTCGCCCCGGCCTGGTTCCCTATCGCGATAACCCGGGCCCCGCGCAGAGCAATGAGACGCCCGACTTG TCCAGCCAGCAACTCCATGACTATCACTCGCAGGTCCTGGACGAGCAGGACGAGCAGCTCGACCGACTGGGCGAG TCAATTGGCAGACAGCGTGAGCTGAGCTTGCAAATTGGCCATGAGCTCGACAACCACGTCGCCATGCTCGACGAG GTTGACAATGCCGCCAACCGCCATCAGGACCGCCTAGACGGCGCAAGAAAGACACTGGCAAAGGTTGCAAAAGGC GCGGGCGAGAACAAGCAAATGACTGCCATTGTGGTGCTCATCATCATCCTCGTCGTATTGATTGCTCTTCTCAAG TAA |
| Transcript | >OphauG2|385 ATGTCCAAGGCAAATCAACTCTTCTTACTGGCAGACCACATCAAATTGTCGCTTCTTGAACGGCAGCGAGCCCAG AGCCTTGAGCTCGACAGCGATGGCCAGGATGGACACTTGGCGCGCTCGCTGGATCAATTCCGCAGCGGCCTCGCC AACCTGGAGCAAGAGCTCGAGGGCACTGACGACGAGGCCTCAAAGTCAGCCGTCGACTCGCTGCGCAAACAGCTC GACGACCTGACGGCCCAGCACCAGGGGCTTGTCGACGCAGCCTCGCAAGCCACGCTCGAGCACGCAAACTCGCCT TTGCTCGCCCAAGACTTTGCCCACGCGTCGACACGCCGAGCCAACAAGATGGTGCGCTTCAGCGATTCGCCATCG CCCAACCCTCGCCCCGGCCTGGTTCCCTATCGCGATAACCCGGGCCCCGCGCAGAGCAATGAGACGCCCGACTTG TCCAGCCAGCAACTCCATGACTATCACTCGCAGGTCCTGGACGAGCAGGACGAGCAGCTCGACCGACTGGGCGAG TCAATTGGCAGACAGCGTGAGCTGAGCTTGCAAATTGGCCATGAGCTCGACAACCACGTCGCCATGCTCGACGAG GTTGACAATGCCGCCAACCGCCATCAGGACCGCCTAGACGGCGCAAGAAAGACACTGGCAAAGGTTGCAAAAGGC GCGGGCGAGAACAAGCAAATGACTGCCATTGTGGTGCTCATCATCATCCTCGTCGTATTGATTGCTCTTCTCAAG TAA |
| Gene | >OphauG2|385 ATGTCCAAGGCAAATCAACTCTTCTTACTGGCAGACCACATCAAATTGTCGCTTCTTGAACGGCAGCGAGCCCAG AGCCTTGAGCTCGACAGCGATGGCCAGGATGGACACTTGGCGCGCTCGCTGGATCAATTCCGCAGCGGCCTCGCC AACCTGGAGCAAGAGCTCGAGGGCACTGACGACGAGTACGGACTACACATGCTCCTTTGTTCCCCCAGCCCAATC TCATCGTTGCAGCTGACCCGCGCGCTACTCTGCTGTCAGGGCCTCAAAGTCAGCCGTCGACTCGCTGCGCAAACA GCTCGACGACCTGACGGCCCAGCACCAGGGGCTTGTCGACGCAGCCTCGCAAGCCACGCTCGAGCACGCAAACTC GCCTTTGCTCGCCCAAGACTTTGCCCACGCGTCGACACGCCGAGCCAACAAGATGGTGCGCTTCAGCGATTCGCC ATCGCCCAACCCTCGCCCCGGCCTGGTTCCCTATCGCGATAACCCGGGCCCCGCGCAGAGCAATGAGACGCCCGA CTTGTCCAGCCAGCAACTCCATGACTATCACTCGCAGGTCCTGGACGAGCAGGACGAGCAGCTCGACCGACTGGG CGAGTCAATTGGCAGACAGCGTGAGCTGAGCTTGCAAATTGGCCATGAGCTCGACAACCACGTCGCCATGCTCGA CGAGGTTGACAATGCCGCCAACCGCCATCAGGACCGCCTAGACGGCGCAAGAAAGACACTGGCAAAGGTTGCAAA AGGCGCGGGCGAGAACAAGCAAATGACTGCCATTGTGGTGCTCATCATCATCCTCGTCGTATTGATTGCTCTTCT CAAGTAA |