© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|3805 |
| Gene name | |
| Location | Contig_3:15522..16710 |
| Strand | + |
| Gene length (bp) | 1188 |
| Transcript length (bp) | 990 |
| Coding sequence length (bp) | 990 |
| Protein length (aa) | 330 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04193 | PQ-loop | PQ loop repeat | 9.7E-15 | 15 | 73 |
| PF04193 | PQ-loop | PQ loop repeat | 5.9E-15 | 211 | 264 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38279|YPQ3_YEAST | Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1 | 9 | 321 | 2.0E-51 |
| sp|Q12010|YPQ1_YEAST | Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1 | 30 | 316 | 2.0E-43 |
| sp|Q10482|STM1_SCHPO | Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV=1 | 7 | 316 | 9.0E-29 |
| sp|Q95XZ6|LAAT1_CAEEL | Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2 | 11 | 328 | 5.0E-24 |
| sp|Q06328|YPQ2_YEAST | Probable vacuolar amino acid transporter YPQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ2 PE=1 SV=1 | 14 | 312 | 5.0E-19 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38279|YPQ3_YEAST | Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1 | 9 | 321 | 2.0E-51 |
| sp|Q12010|YPQ1_YEAST | Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1 | 30 | 316 | 2.0E-43 |
| sp|Q10482|STM1_SCHPO | Seven transmembrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stm1 PE=1 SV=1 | 7 | 316 | 9.0E-29 |
| sp|Q95XZ6|LAAT1_CAEEL | Lysosomal amino acid transporter 1 OS=Caenorhabditis elegans GN=laat-1 PE=1 SV=2 | 11 | 328 | 5.0E-24 |
| sp|Q06328|YPQ2_YEAST | Probable vacuolar amino acid transporter YPQ2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ2 PE=1 SV=1 | 14 | 312 | 5.0E-19 |
| sp|Q6ZP29|LAAT1_HUMAN | Lysosomal amino acid transporter 1 homolog OS=Homo sapiens GN=PQLC2 PE=1 SV=1 | 19 | 322 | 3.0E-18 |
| sp|Q5ZJX0|LAAT1_CHICK | Lysosomal amino acid transporter 1 homolog OS=Gallus gallus GN=PQLC2 PE=2 SV=1 | 192 | 327 | 2.0E-15 |
| sp|B0BMY1|LAAT1_RAT | Lysosomal amino acid transporter 1 homolog OS=Rattus norvegicus GN=Pqlc2 PE=1 SV=1 | 19 | 325 | 8.0E-13 |
| sp|Q8C4N4|LAAT1_MOUSE | Lysosomal amino acid transporter 1 homolog OS=Mus musculus GN=Pqlc2 PE=2 SV=1 | 19 | 316 | 2.0E-10 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 33 | 18 |
| 2 | 46 | 68 | 22 |
| 3 | 72 | 94 | 22 |
| 4 | 164 | 186 | 22 |
| 5 | 201 | 223 | 22 |
| 6 | 244 | 266 | 22 |
| 7 | 286 | 308 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|3805 MASPAPAPLLDVTAISGIFGSISIAFWVVVSTPQLIQQYRQGNANGLSIRFMTIWVLGDVFNVLGALLQGVLPTM IILAIYYIFADGILWLQCFYYRGFRLRDEPPPAPLLAHMPPGECTALLPSSDLEERPIYEWPSLGPTVPDAHQDA LAGEKNPSKGLQNALIKAGIVTLISLTGVLGWYISHLVASWGDKHEPVDQGQGTPLEFNVLGQIFGYVCTVFYTC SRMPQLILNWRRKTTNGLSILFFMFTCLGNVNFALSILIYVPTCADAVCKPGEASQIYWRYILINLSWLSGCLLT LALDLCILAQYYAYQKPSGEKEQAQIAAD* |
| Coding | >OphauG2|3805 ATGGCCTCTCCTGCTCCAGCCCCTTTGCTCGATGTCACAGCCATTTCGGGCATTTTTGGCTCTATTTCCATTGCC TTTTGGGTCGTCGTTTCCACGCCCCAGTTGATCCAGCAGTATAGACAAGGAAACGCAAATGGTCTCTCCATTCGC TTCATGACCATTTGGGTCCTTGGCGATGTCTTCAATGTATTGGGCGCCCTGTTGCAGGGCGTTCTCCCCACAATG ATCATCTTGGCCATTTACTACATCTTTGCAGACGGTATCCTCTGGCTACAGTGCTTCTATTATCGTGGTTTCAGG CTACGTGACGAACCACCGCCCGCTCCTTTATTGGCTCACATGCCTCCAGGAGAATGCACAGCTCTGCTCCCAAGT AGCGACCTTGAGGAGCGTCCCATTTATGAGTGGCCTAGTTTGGGCCCCACAGTCCCAGATGCCCATCAAGATGCC TTGGCTGGCGAAAAGAACCCATCAAAGGGGTTGCAAAATGCCTTGATCAAGGCCGGCATTGTCACTCTCATTTCC TTGACTGGTGTCTTGGGCTGGTACATATCACATCTGGTGGCTAGCTGGGGTGACAAGCACGAGCCCGTCGATCAA GGCCAGGGGACCCCACTCGAGTTCAACGTGCTGGGCCAAATATTTGGCTACGTTTGCACCGTCTTTTATACTTGC TCACGTATGCCCCAGCTCATCCTCAACTGGCGTCGCAAAACGACAAACGGCCTGAGCATTCTCTTCTTCATGTTT ACCTGCCTTGGAAACGTCAACTTTGCCCTGTCCATTCTCATATACGTCCCCACTTGCGCTGATGCTGTTTGCAAG CCAGGCGAGGCCAGCCAGATATACTGGCGCTACATCTTGATTAATCTGAGTTGGCTTTCAGGCTGCTTACTGACA TTGGCCTTGGATCTATGCATTCTTGCACAATACTACGCATATCAGAAACCTAGTGGTGAGAAAGAACAGGCCCAA ATAGCTGCCGACTAG |
| Transcript | >OphauG2|3805 ATGGCCTCTCCTGCTCCAGCCCCTTTGCTCGATGTCACAGCCATTTCGGGCATTTTTGGCTCTATTTCCATTGCC TTTTGGGTCGTCGTTTCCACGCCCCAGTTGATCCAGCAGTATAGACAAGGAAACGCAAATGGTCTCTCCATTCGC TTCATGACCATTTGGGTCCTTGGCGATGTCTTCAATGTATTGGGCGCCCTGTTGCAGGGCGTTCTCCCCACAATG ATCATCTTGGCCATTTACTACATCTTTGCAGACGGTATCCTCTGGCTACAGTGCTTCTATTATCGTGGTTTCAGG CTACGTGACGAACCACCGCCCGCTCCTTTATTGGCTCACATGCCTCCAGGAGAATGCACAGCTCTGCTCCCAAGT AGCGACCTTGAGGAGCGTCCCATTTATGAGTGGCCTAGTTTGGGCCCCACAGTCCCAGATGCCCATCAAGATGCC TTGGCTGGCGAAAAGAACCCATCAAAGGGGTTGCAAAATGCCTTGATCAAGGCCGGCATTGTCACTCTCATTTCC TTGACTGGTGTCTTGGGCTGGTACATATCACATCTGGTGGCTAGCTGGGGTGACAAGCACGAGCCCGTCGATCAA GGCCAGGGGACCCCACTCGAGTTCAACGTGCTGGGCCAAATATTTGGCTACGTTTGCACCGTCTTTTATACTTGC TCACGTATGCCCCAGCTCATCCTCAACTGGCGTCGCAAAACGACAAACGGCCTGAGCATTCTCTTCTTCATGTTT ACCTGCCTTGGAAACGTCAACTTTGCCCTGTCCATTCTCATATACGTCCCCACTTGCGCTGATGCTGTTTGCAAG CCAGGCGAGGCCAGCCAGATATACTGGCGCTACATCTTGATTAATCTGAGTTGGCTTTCAGGCTGCTTACTGACA TTGGCCTTGGATCTATGCATTCTTGCACAATACTACGCATATCAGAAACCTAGTGGTGAGAAAGAACAGGCCCAA ATAGCTGCCGACTAG |
| Gene | >OphauG2|3805 ATGGCCTCTCCTGCTCCAGCCCCTTTGCTCGATGTCACAGCCATTTCGGGCATTTTTGGGTCAGCTCCCCTGCCC CTTTCCCTCGCCGCTCTTTATTCAGTTCTGACGACAGCCTCATCTCCAGCTCTATTTCCATTGCCTTTTGGGGTC AGTGCGACTTTCCCTGCCGCACGCTCGCCCATCTTGATTGCGAGCCCCCCGTGCGCCAACTGACGCCCAGGTAGT CGTCGTTTCCACGCCCCAGTTGATCCAGCAGTATAGACAAGGAAACGCAAATGGTCTCTCCATTCGCTTCATGAC CATTTGGGTCCTTGGCGATGTCTTCAATGTATTGGGCGCCCTGTTGCAGGGCGTTCTCCCCACAATGGTATGCTG CCCCAAGAACCTTGAACCATGCCCCATGTCTCACTCTTTGCCCTATAGATCATCTTGGCCATTTACTACATCTTT GCAGACGGTATCCTCTGGCTACAGTGCTTCTATTATCGTGGTTTCAGGCTACGTGACGAACCACCGCCCGCTCCT TTATTGGCTCACATGCCTCCAGGAGAATGCACAGCTCTGCTCCCAAGTAGCGACCTTGAGGAGCGTCCCATTTAT GAGTGGCCTAGTTTGGGCCCCACAGTCCCAGATGCCCATCAAGATGCCTTGGCTGGCGAAAAGAACCCATCAAAG GGGTTGCAAAATGCCTTGATCAAGGCCGGCATTGTCACTCTCATTTCCTTGACTGGTGTCTTGGGCTGGTACATA TCACATCTGGTGGCTAGCTGGGGTGACAAGCACGAGCCCGTCGATCAAGGCCAGGGGACCCCACTCGAGTTCAAC GTGCTGGGCCAAATATTTGGCTACGTTTGCACCGTCTTTTATACTTGCTCACGTATGCCCCAGCTCATCCTCAAC TGGCGTCGCAAAACGACAAACGGCCTGAGCATTCTCTTCTTCATGTTTACCTGCCTTGGAAACGTCAACTTTGCC CTGTCCATTCTCATATACGTCCCCACTTGCGCTGATGCTGTTTGCAAGCCAGGCGAGGCCAGCCAGATATACTGG CGCTACATCTTGATTAATCTGAGTTGGCTTTCAGGCTGCTTACTGACATTGGCCTTGGATCTATGCATTCTTGCA CAATACTACGCATATCAGAAACCTAGTGGTGAGAAAGAACAGGCCCAAATAGCTGCCGACTAG |