Protein ID | OphauG2|378 |
Gene name | |
Location | Contig_1089:1030..2131 |
Strand | + |
Gene length (bp) | 1101 |
Transcript length (bp) | 960 |
Coding sequence length (bp) | 960 |
Protein length (aa) | 320 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF05739 | SNARE | SNARE domain | 8.3E-13 | 263 | 315 |
PF11416 | Syntaxin-5_N | Syntaxin-5 N-terminal, Sly1p-binding domain | 7.9E-09 | 1 | 23 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O13644|SED5_SCHPO | Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 | 5 | 318 | 2.0E-84 |
sp|Q01590|SED5_YEAST | Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 | 5 | 318 | 7.0E-58 |
sp|Q8K1E0|STX5_MOUSE | Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 | 5 | 302 | 9.0E-55 |
sp|Q08851|STX5_RAT | Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 | 5 | 302 | 2.0E-54 |
sp|Q08DB5|STX5_BOVIN | Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 | 5 | 302 | 1.0E-53 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O13644|SED5_SCHPO | Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 | 5 | 318 | 2.0E-84 |
sp|Q01590|SED5_YEAST | Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 | 5 | 318 | 7.0E-58 |
sp|Q8K1E0|STX5_MOUSE | Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 | 5 | 302 | 9.0E-55 |
sp|Q08851|STX5_RAT | Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 | 5 | 302 | 2.0E-54 |
sp|Q08DB5|STX5_BOVIN | Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 | 5 | 302 | 1.0E-53 |
sp|Q24509|STX5_DROME | Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2 | 3 | 303 | 2.0E-53 |
sp|Q13190|STX5_HUMAN | Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 | 5 | 302 | 2.0E-53 |
sp|Q9LK09|SYP32_ARATH | Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1 | 4 | 316 | 1.0E-47 |
sp|Q9FFK1|SYP31_ARATH | Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1 | 4 | 316 | 4.0E-41 |
sp|Q20797|STX5_CAEEL | Putative syntaxin-5 OS=Caenorhabditis elegans GN=syx-5 PE=3 SV=1 | 7 | 302 | 3.0E-39 |
sp|O14662|STX16_HUMAN | Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3 | 62 | 299 | 1.0E-06 |
sp|Q8BVI5|STX16_MOUSE | Syntaxin-16 OS=Mus musculus GN=Stx16 PE=1 SV=3 | 62 | 299 | 6.0E-06 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 59 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 298 | 317 | 19 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >OphauG2|378 MAIASVQDRTAEFRSVLDQARRRQHSTKVGSQRRSLLNDAQKAAAHGDSQPRRSDFARKAAEIGRGISATMGKLE KLAQLAKRRTLFDDRPVEINELTFIIKQDLSSLNQQIGSLQSLSKQQHPKADQEGEHNKNVVYLLQGKLTDVSVN FKDVLEARTKNIQASRSRTENFISTVSQHAQPSLQTTASPLYGTPTSSSPAPGADTLSLDPVGDQQVVMMEEAQS TNMYIEQRAQAIEAIQRTIGELGSIFGQLATMVTEQHEMVQRIDANTEDVVDNVEGAQRELFKYWSRVSSNRWLV AKMFGVMMVFFLLWVLVSG* |
Coding | >OphauG2|378 ATGGCTATCGCGTCTGTCCAGGATCGCACCGCCGAGTTTCGGTCGGTCCTGGACCAAGCCAGACGTCGCCAACAT TCGACAAAGGTTGGATCGCAACGGCGGTCGCTCCTCAACGATGCCCAGAAAGCTGCTGCTCACGGCGACTCGCAG CCCCGCCGGTCGGATTTTGCGCGCAAGGCCGCCGAGATTGGGCGCGGCATATCAGCTACCATGGGCAAGCTTGAA AAACTAGCACAGCTTGCCAAACGACGCACCTTGTTCGACGATCGGCCAGTTGAAATCAACGAACTCACCTTTATC ATCAAGCAAGACCTCTCTTCCCTCAACCAACAGATCGGTTCCCTTCAATCGCTCTCAAAGCAACAGCATCCCAAG GCCGACCAAGAGGGCGAACACAACAAAAATGTGGTTTACTTGCTTCAAGGGAAGCTGACGGATGTCTCTGTCAAT TTCAAGGATGTGCTCGAGGCCCGCACCAAGAATATTCAGGCGTCTCGCTCTCGGACAGAAAACTTTATTTCTACC GTGTCGCAACATGCCCAGCCCAGCCTCCAAACGACTGCATCGCCGCTCTATGGCACGCCCACTAGCTCGTCCCCC GCGCCTGGGGCTGATACCCTTTCTCTCGACCCCGTGGGCGACCAGCAGGTCGTCATGATGGAAGAGGCGCAGTCG ACCAATATGTACATTGAACAGAGGGCCCAGGCGATTGAAGCCATTCAGAGGACTATTGGAGAACTTGGCAGCATT TTTGGCCAGTTGGCAACAATGGTGACGGAGCAGCACGAAATGGTTCAACGCATAGATGCAAATACCGAAGACGTT GTAGACAATGTCGAGGGCGCTCAACGAGAGTTGTTCAAATATTGGTCGCGCGTGTCGAGCAATCGATGGCTCGTT GCCAAGATGTTTGGAGTAATGATGGTTTTCTTTTTGCTTTGGGTTCTCGTGTCTGGTTGA |
Transcript | >OphauG2|378 ATGGCTATCGCGTCTGTCCAGGATCGCACCGCCGAGTTTCGGTCGGTCCTGGACCAAGCCAGACGTCGCCAACAT TCGACAAAGGTTGGATCGCAACGGCGGTCGCTCCTCAACGATGCCCAGAAAGCTGCTGCTCACGGCGACTCGCAG CCCCGCCGGTCGGATTTTGCGCGCAAGGCCGCCGAGATTGGGCGCGGCATATCAGCTACCATGGGCAAGCTTGAA AAACTAGCACAGCTTGCCAAACGACGCACCTTGTTCGACGATCGGCCAGTTGAAATCAACGAACTCACCTTTATC ATCAAGCAAGACCTCTCTTCCCTCAACCAACAGATCGGTTCCCTTCAATCGCTCTCAAAGCAACAGCATCCCAAG GCCGACCAAGAGGGCGAACACAACAAAAATGTGGTTTACTTGCTTCAAGGGAAGCTGACGGATGTCTCTGTCAAT TTCAAGGATGTGCTCGAGGCCCGCACCAAGAATATTCAGGCGTCTCGCTCTCGGACAGAAAACTTTATTTCTACC GTGTCGCAACATGCCCAGCCCAGCCTCCAAACGACTGCATCGCCGCTCTATGGCACGCCCACTAGCTCGTCCCCC GCGCCTGGGGCTGATACCCTTTCTCTCGACCCCGTGGGCGACCAGCAGGTCGTCATGATGGAAGAGGCGCAGTCG ACCAATATGTACATTGAACAGAGGGCCCAGGCGATTGAAGCCATTCAGAGGACTATTGGAGAACTTGGCAGCATT TTTGGCCAGTTGGCAACAATGGTGACGGAGCAGCACGAAATGGTTCAACGCATAGATGCAAATACCGAAGACGTT GTAGACAATGTCGAGGGCGCTCAACGAGAGTTGTTCAAATATTGGTCGCGCGTGTCGAGCAATCGATGGCTCGTT GCCAAGATGTTTGGAGTAATGATGGTTTTCTTTTTGCTTTGGGTTCTCGTGTCTGGTTGA |
Gene | >OphauG2|378 ATGGCTATCGCGTCTGTCCAGGATCGCACCGCCGAGTTTCGGTCGGTCCTGGACCAAGCCAGACGTCGCCAACAT TCGACAAAGGTTGGATCGCAACGGCGGTCGCTCCTCAACGATGCCCAGAAAGCTGCTGCTCACGGCGACTCGCAG CCCCGCCGGTCGGATTTTGCGCGCAAGGCCGCCGAGATTGGGCGCGGCATATCAGCTACCATGGGCAAGCTTGAA AAACTAGCACAGCGTAAGTTTGCTACTGCGATATTACGCGACGCGGCTTTTTGGGCTCATGTTAGGCCATGATAG TTGCCAAACGACGCACCTTGTTCGACGATCGGCCAGTTGAAATCAACGAACTCACCTTTATCATCAAGCAAGACC TCTCTTCCCTCAACCAACAGATCGGTTCCCTTCAATCGCTCTCAAAGCAACAGCATCCCAAGGCCGACCAAGAGG GCGAACACAACAAAAATGTGGTTTACTTGCTTCAAGGGAAGCTGACGGATGTCTCTGTCAATTTCAAGGATGTGC TCGAGGCCCGCACCAAGAATATTCAGGCGTCTCGCTCTCGGACAGAAAACTTTATTTCTACCGTGTCGCAACATG CCCAGCCCAGCCTCCAAACGACTGCATCGCCGCTCTATGGCACGCCCACTAGCTCGTCCCCCGCGCCTGGGGCTG ATACCCTTTCTCTCGACCCCGTGGGCGACCAGCAGGTCGTCATGATGGAAGAGGCGCAGTCGACCAATATGTACA TTGAACAGAGGGCCCAGGCGATTGAAGCCATTCAGAGGACTATTGGAGAACTTGGCAGCATTTTTGGCCAGTTGG CAACAATGGTGACGGAGCAGCACGAAATGGTTCAACGCATAGATGCAAATACCGAAGACGTTGTAGACAATGTCG AGGGCGCTCAACGAGAGTTGTTCAAATATTGGTCGCGCGTGTCGAGCAATCGATGGCTCGTTGCCAAGATGTTTG GAGTAATGATGGTTTTCTTTTTGTGAGTTTTTTTTGTCATCTTTCCCTCCCCCCAACTCTCTACCCGTGTCTAGC TGTGCTCACTCTCGTTTCCTCTACAGGCTTTGGGTTCTCGTGTCTGGTTGA |