Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|378
Gene name
LocationContig_1089:1030..2131
Strand+
Gene length (bp)1101
Transcript length (bp)960
Coding sequence length (bp)960
Protein length (aa) 320

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05739 SNARE SNARE domain 8.3E-13 263 315
PF11416 Syntaxin-5_N Syntaxin-5 N-terminal, Sly1p-binding domain 7.9E-09 1 23

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 5 318 2.0E-84
sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 5 318 7.0E-58
sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 5 302 9.0E-55
sp|Q08851|STX5_RAT Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 5 302 2.0E-54
sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 5 302 1.0E-53
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 5 318 2.0E-84
sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 5 318 7.0E-58
sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 5 302 9.0E-55
sp|Q08851|STX5_RAT Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 5 302 2.0E-54
sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 5 302 1.0E-53
sp|Q24509|STX5_DROME Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2 3 303 2.0E-53
sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 5 302 2.0E-53
sp|Q9LK09|SYP32_ARATH Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1 4 316 1.0E-47
sp|Q9FFK1|SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1 4 316 4.0E-41
sp|Q20797|STX5_CAEEL Putative syntaxin-5 OS=Caenorhabditis elegans GN=syx-5 PE=3 SV=1 7 302 3.0E-39
sp|O14662|STX16_HUMAN Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3 62 299 1.0E-06
sp|Q8BVI5|STX16_MOUSE Syntaxin-16 OS=Mus musculus GN=Stx16 PE=1 SV=3 62 299 6.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 59 0.45

Transmembrane Domains

Domain # Start End Length
1 298 317 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|378
MAIASVQDRTAEFRSVLDQARRRQHSTKVGSQRRSLLNDAQKAAAHGDSQPRRSDFARKAAEIGRGISATMGKLE
KLAQLAKRRTLFDDRPVEINELTFIIKQDLSSLNQQIGSLQSLSKQQHPKADQEGEHNKNVVYLLQGKLTDVSVN
FKDVLEARTKNIQASRSRTENFISTVSQHAQPSLQTTASPLYGTPTSSSPAPGADTLSLDPVGDQQVVMMEEAQS
TNMYIEQRAQAIEAIQRTIGELGSIFGQLATMVTEQHEMVQRIDANTEDVVDNVEGAQRELFKYWSRVSSNRWLV
AKMFGVMMVFFLLWVLVSG*
Coding >OphauG2|378
ATGGCTATCGCGTCTGTCCAGGATCGCACCGCCGAGTTTCGGTCGGTCCTGGACCAAGCCAGACGTCGCCAACAT
TCGACAAAGGTTGGATCGCAACGGCGGTCGCTCCTCAACGATGCCCAGAAAGCTGCTGCTCACGGCGACTCGCAG
CCCCGCCGGTCGGATTTTGCGCGCAAGGCCGCCGAGATTGGGCGCGGCATATCAGCTACCATGGGCAAGCTTGAA
AAACTAGCACAGCTTGCCAAACGACGCACCTTGTTCGACGATCGGCCAGTTGAAATCAACGAACTCACCTTTATC
ATCAAGCAAGACCTCTCTTCCCTCAACCAACAGATCGGTTCCCTTCAATCGCTCTCAAAGCAACAGCATCCCAAG
GCCGACCAAGAGGGCGAACACAACAAAAATGTGGTTTACTTGCTTCAAGGGAAGCTGACGGATGTCTCTGTCAAT
TTCAAGGATGTGCTCGAGGCCCGCACCAAGAATATTCAGGCGTCTCGCTCTCGGACAGAAAACTTTATTTCTACC
GTGTCGCAACATGCCCAGCCCAGCCTCCAAACGACTGCATCGCCGCTCTATGGCACGCCCACTAGCTCGTCCCCC
GCGCCTGGGGCTGATACCCTTTCTCTCGACCCCGTGGGCGACCAGCAGGTCGTCATGATGGAAGAGGCGCAGTCG
ACCAATATGTACATTGAACAGAGGGCCCAGGCGATTGAAGCCATTCAGAGGACTATTGGAGAACTTGGCAGCATT
TTTGGCCAGTTGGCAACAATGGTGACGGAGCAGCACGAAATGGTTCAACGCATAGATGCAAATACCGAAGACGTT
GTAGACAATGTCGAGGGCGCTCAACGAGAGTTGTTCAAATATTGGTCGCGCGTGTCGAGCAATCGATGGCTCGTT
GCCAAGATGTTTGGAGTAATGATGGTTTTCTTTTTGCTTTGGGTTCTCGTGTCTGGTTGA
Transcript >OphauG2|378
ATGGCTATCGCGTCTGTCCAGGATCGCACCGCCGAGTTTCGGTCGGTCCTGGACCAAGCCAGACGTCGCCAACAT
TCGACAAAGGTTGGATCGCAACGGCGGTCGCTCCTCAACGATGCCCAGAAAGCTGCTGCTCACGGCGACTCGCAG
CCCCGCCGGTCGGATTTTGCGCGCAAGGCCGCCGAGATTGGGCGCGGCATATCAGCTACCATGGGCAAGCTTGAA
AAACTAGCACAGCTTGCCAAACGACGCACCTTGTTCGACGATCGGCCAGTTGAAATCAACGAACTCACCTTTATC
ATCAAGCAAGACCTCTCTTCCCTCAACCAACAGATCGGTTCCCTTCAATCGCTCTCAAAGCAACAGCATCCCAAG
GCCGACCAAGAGGGCGAACACAACAAAAATGTGGTTTACTTGCTTCAAGGGAAGCTGACGGATGTCTCTGTCAAT
TTCAAGGATGTGCTCGAGGCCCGCACCAAGAATATTCAGGCGTCTCGCTCTCGGACAGAAAACTTTATTTCTACC
GTGTCGCAACATGCCCAGCCCAGCCTCCAAACGACTGCATCGCCGCTCTATGGCACGCCCACTAGCTCGTCCCCC
GCGCCTGGGGCTGATACCCTTTCTCTCGACCCCGTGGGCGACCAGCAGGTCGTCATGATGGAAGAGGCGCAGTCG
ACCAATATGTACATTGAACAGAGGGCCCAGGCGATTGAAGCCATTCAGAGGACTATTGGAGAACTTGGCAGCATT
TTTGGCCAGTTGGCAACAATGGTGACGGAGCAGCACGAAATGGTTCAACGCATAGATGCAAATACCGAAGACGTT
GTAGACAATGTCGAGGGCGCTCAACGAGAGTTGTTCAAATATTGGTCGCGCGTGTCGAGCAATCGATGGCTCGTT
GCCAAGATGTTTGGAGTAATGATGGTTTTCTTTTTGCTTTGGGTTCTCGTGTCTGGTTGA
Gene >OphauG2|378
ATGGCTATCGCGTCTGTCCAGGATCGCACCGCCGAGTTTCGGTCGGTCCTGGACCAAGCCAGACGTCGCCAACAT
TCGACAAAGGTTGGATCGCAACGGCGGTCGCTCCTCAACGATGCCCAGAAAGCTGCTGCTCACGGCGACTCGCAG
CCCCGCCGGTCGGATTTTGCGCGCAAGGCCGCCGAGATTGGGCGCGGCATATCAGCTACCATGGGCAAGCTTGAA
AAACTAGCACAGCGTAAGTTTGCTACTGCGATATTACGCGACGCGGCTTTTTGGGCTCATGTTAGGCCATGATAG
TTGCCAAACGACGCACCTTGTTCGACGATCGGCCAGTTGAAATCAACGAACTCACCTTTATCATCAAGCAAGACC
TCTCTTCCCTCAACCAACAGATCGGTTCCCTTCAATCGCTCTCAAAGCAACAGCATCCCAAGGCCGACCAAGAGG
GCGAACACAACAAAAATGTGGTTTACTTGCTTCAAGGGAAGCTGACGGATGTCTCTGTCAATTTCAAGGATGTGC
TCGAGGCCCGCACCAAGAATATTCAGGCGTCTCGCTCTCGGACAGAAAACTTTATTTCTACCGTGTCGCAACATG
CCCAGCCCAGCCTCCAAACGACTGCATCGCCGCTCTATGGCACGCCCACTAGCTCGTCCCCCGCGCCTGGGGCTG
ATACCCTTTCTCTCGACCCCGTGGGCGACCAGCAGGTCGTCATGATGGAAGAGGCGCAGTCGACCAATATGTACA
TTGAACAGAGGGCCCAGGCGATTGAAGCCATTCAGAGGACTATTGGAGAACTTGGCAGCATTTTTGGCCAGTTGG
CAACAATGGTGACGGAGCAGCACGAAATGGTTCAACGCATAGATGCAAATACCGAAGACGTTGTAGACAATGTCG
AGGGCGCTCAACGAGAGTTGTTCAAATATTGGTCGCGCGTGTCGAGCAATCGATGGCTCGTTGCCAAGATGTTTG
GAGTAATGATGGTTTTCTTTTTGTGAGTTTTTTTTGTCATCTTTCCCTCCCCCCAACTCTCTACCCGTGTCTAGC
TGTGCTCACTCTCGTTTCCTCTACAGGCTTTGGGTTCTCGTGTCTGGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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