Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|3750
Gene name
Location	Contig_293:6183..7685
Strand	-
Gene length (bp)	1502
Transcript length (bp)	1389
Coding sequence length (bp)	1389
Protein length (aa)	463

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF03943	TAP_C	TAP C-terminal domain	1.3E-15	416	461
PF02136	NTF2	Nuclear transport factor 2 (NTF2) domain	4.0E-04	215	387

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9Y8G3\|MEX67_SCHPO	mRNA export factor mex67 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mex67 PE=1 SV=1	199	462	3.0E-22
sp\|P84149\|MEX67_CANAL	mRNA export factor MEX67 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MEX67 PE=1 SV=2	210	462	2.0E-15
sp\|Q9UBU9\|NXF1_HUMAN	Nuclear RNA export factor 1 OS=Homo sapiens GN=NXF1 PE=1 SV=1	160	461	9.0E-13
sp\|Q99JX7\|NXF1_MOUSE	Nuclear RNA export factor 1 OS=Mus musculus GN=Nxf1 PE=1 SV=3	153	461	1.0E-12
sp\|O88984\|NXF1_RAT	Nuclear RNA export factor 1 OS=Rattus norvegicus GN=Nxf1 PE=2 SV=1	198	461	2.0E-12

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9Y8G3\|MEX67_SCHPO	mRNA export factor mex67 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mex67 PE=1 SV=1	199	462	3.0E-22
sp\|P84149\|MEX67_CANAL	mRNA export factor MEX67 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MEX67 PE=1 SV=2	210	462	2.0E-15
sp\|Q9UBU9\|NXF1_HUMAN	Nuclear RNA export factor 1 OS=Homo sapiens GN=NXF1 PE=1 SV=1	160	461	9.0E-13
sp\|Q99JX7\|NXF1_MOUSE	Nuclear RNA export factor 1 OS=Mus musculus GN=Nxf1 PE=1 SV=3	153	461	1.0E-12
sp\|O88984\|NXF1_RAT	Nuclear RNA export factor 1 OS=Rattus norvegicus GN=Nxf1 PE=2 SV=1	198	461	2.0E-12
sp\|Q5R752\|NXF1_PONAB	Nuclear RNA export factor 1 OS=Pongo abelii GN=NXF1 PE=3 SV=1	188	461	3.0E-12
sp\|P58797\|NXF1_COTJA	Nuclear RNA export factor 1 OS=Coturnix coturnix japonica GN=NXF1 PE=1 SV=1	188	461	3.0E-12
sp\|Q1RMS5\|NXF1_BOVIN	Nuclear RNA export factor 1 OS=Bos taurus GN=NXF1 PE=2 SV=1	160	461	1.0E-11
sp\|Q99257\|MEX67_YEAST	mRNA export factor MEX67 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MEX67 PE=1 SV=1	194	462	5.0E-08
sp\|Q9XVS7\|NXF1_CAEEL	Nuclear RNA export factor 1 OS=Caenorhabditis elegans GN=nxf-1 PE=1 SV=1	217	462	6.0E-08

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GO

GO Term	Description	Terminal node
GO:0051028	mRNA transport	Yes
GO:0005634	nucleus	Yes
GO:0015931	nucleobase-containing compound transport	No
GO:0051236	establishment of RNA localization	No
GO:0005575	cellular_component	No
GO:0110165	cellular anatomical entity	No
GO:0008150	biological_process	No
GO:0050657	nucleic acid transport	No
GO:0043226	organelle	No
GO:0071702	organic substance transport	No
GO:0071705	nitrogen compound transport	No
GO:0051234	establishment of localization	No
GO:0006810	transport	No
GO:0043227	membrane-bounded organelle	No
GO:0051179	localization	No
GO:0050658	RNA transport	No
GO:0043231	intracellular membrane-bounded organelle	No
GO:0043229	intracellular organelle	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 14	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|3750 MAPRGPRSSASTRQAKSTTKASTRAGITKHRGPTRADIDGDIDMDAPTRASNRSTADGAGNRRVSALQASRNTRA LPRNPRREIIATLASRVTDPSQLRAKPGFAVLRVHGLSQSKAASNPDGGLEDLIAFLKRKASSFVNGPSRRHIGI QKCHRAGDYVYITASKRDAEELVKINKFQFAGTALEVVAMNQDAVTEPPCPIPQHGPDFRDLNGVGESFLLDFFA MFDSDRQGLISRFYDKDSTFSLAVDTQSIRDTNAPAPLPWSAYLKFSRNLLRITHRNARIQRLFKGANVIYELWA NLPLTRHPDVKSSFDKYIFDCHPVDGLANPNGPPHSNVSGLTVSAHGEFDESDTQTHSGGKRSFSRTFVLGPGQN GQGAIRVVSDVLMLRAYNALPDVSAAPTANAVTNGNQHDAMIVELSKQTGMLPEYSKMCLEQVDWQFEKALPLFL EKKGQLPADAFA*
Coding	>OphauG2\|3750 ATGGCGCCTCGGGGTCCGCGATCGTCGGCGAGTACTCGCCAGGCCAAGAGCACCACAAAGGCCAGCACGAGAGCT GGTATCACCAAGCACCGAGGCCCTACAAGAGCAGATATCGATGGCGACATTGACATGGACGCACCCACAAGGGCG TCCAACAGATCTACGGCTGATGGCGCCGGAAACCGGCGTGTCTCTGCCTTGCAAGCCTCCCGAAACACACGAGCC TTGCCTAGGAACCCAAGGCGTGAGATTATCGCCACTCTTGCCTCACGAGTCACGGATCCTTCACAACTACGAGCA AAGCCTGGTTTTGCCGTATTGCGAGTCCATGGCTTGAGTCAAAGCAAGGCGGCCAGCAACCCGGACGGAGGCCTC GAGGATTTGATCGCCTTTCTAAAGCGTAAAGCCTCTTCCTTTGTCAATGGGCCATCGAGACGGCACATTGGCATA CAAAAGTGTCACAGGGCCGGGGACTACGTATACATTACAGCATCCAAGCGTGACGCCGAGGAACTCGTCAAGATA AACAAGTTTCAATTCGCCGGCACTGCTCTGGAAGTTGTCGCGATGAATCAAGATGCCGTGACCGAGCCGCCTTGT CCAATCCCTCAACATGGTCCCGACTTTCGAGACCTTAACGGGGTCGGCGAGAGCTTTCTGCTCGATTTCTTTGCC ATGTTTGATTCGGATCGTCAGGGGTTGATTTCACGCTTCTACGACAAGGACAGTACCTTTTCACTCGCCGTCGAC ACACAGTCCATCCGGGATACTAACGCGCCAGCCCCTTTGCCCTGGTCGGCGTACCTCAAGTTTTCACGAAACCTT CTCAGAATCACGCACCGGAATGCCAGGATTCAGCGACTTTTCAAAGGGGCCAATGTCATCTACGAATTGTGGGCC AACCTGCCACTGACGAGACATCCAGACGTCAAGTCAAGTTTTGACAAGTACATATTCGACTGTCATCCCGTAGAC GGCCTGGCGAACCCCAACGGCCCGCCACATTCCAACGTTTCGGGCTTAACAGTATCTGCTCACGGGGAATTTGAC GAGAGCGATACGCAGACTCACTCGGGAGGGAAGCGAAGTTTTTCGCGTACTTTTGTCCTTGGGCCCGGCCAGAAC GGTCAGGGAGCTATTCGAGTCGTCAGCGATGTGCTCATGTTGCGAGCCTACAATGCGCTGCCCGATGTGTCTGCG GCTCCTACGGCAAACGCCGTAACAAATGGCAACCAGCATGACGCCATGATTGTTGAGCTGTCGAAGCAGACGGGA ATGCTGCCAGAGTACAGCAAAATGTGCTTGGAGCAGGTGGATTGGCAGTTTGAAAAGGCCCTGCCTTTATTTCTT GAGAAGAAGGGACAACTTCCCGCCGACGCGTTCGCCTAG
Transcript	>OphauG2\|3750 ATGGCGCCTCGGGGTCCGCGATCGTCGGCGAGTACTCGCCAGGCCAAGAGCACCACAAAGGCCAGCACGAGAGCT GGTATCACCAAGCACCGAGGCCCTACAAGAGCAGATATCGATGGCGACATTGACATGGACGCACCCACAAGGGCG TCCAACAGATCTACGGCTGATGGCGCCGGAAACCGGCGTGTCTCTGCCTTGCAAGCCTCCCGAAACACACGAGCC TTGCCTAGGAACCCAAGGCGTGAGATTATCGCCACTCTTGCCTCACGAGTCACGGATCCTTCACAACTACGAGCA AAGCCTGGTTTTGCCGTATTGCGAGTCCATGGCTTGAGTCAAAGCAAGGCGGCCAGCAACCCGGACGGAGGCCTC GAGGATTTGATCGCCTTTCTAAAGCGTAAAGCCTCTTCCTTTGTCAATGGGCCATCGAGACGGCACATTGGCATA CAAAAGTGTCACAGGGCCGGGGACTACGTATACATTACAGCATCCAAGCGTGACGCCGAGGAACTCGTCAAGATA AACAAGTTTCAATTCGCCGGCACTGCTCTGGAAGTTGTCGCGATGAATCAAGATGCCGTGACCGAGCCGCCTTGT CCAATCCCTCAACATGGTCCCGACTTTCGAGACCTTAACGGGGTCGGCGAGAGCTTTCTGCTCGATTTCTTTGCC ATGTTTGATTCGGATCGTCAGGGGTTGATTTCACGCTTCTACGACAAGGACAGTACCTTTTCACTCGCCGTCGAC ACACAGTCCATCCGGGATACTAACGCGCCAGCCCCTTTGCCCTGGTCGGCGTACCTCAAGTTTTCACGAAACCTT CTCAGAATCACGCACCGGAATGCCAGGATTCAGCGACTTTTCAAAGGGGCCAATGTCATCTACGAATTGTGGGCC AACCTGCCACTGACGAGACATCCAGACGTCAAGTCAAGTTTTGACAAGTACATATTCGACTGTCATCCCGTAGAC GGCCTGGCGAACCCCAACGGCCCGCCACATTCCAACGTTTCGGGCTTAACAGTATCTGCTCACGGGGAATTTGAC GAGAGCGATACGCAGACTCACTCGGGAGGGAAGCGAAGTTTTTCGCGTACTTTTGTCCTTGGGCCCGGCCAGAAC GGTCAGGGAGCTATTCGAGTCGTCAGCGATGTGCTCATGTTGCGAGCCTACAATGCGCTGCCCGATGTGTCTGCG GCTCCTACGGCAAACGCCGTAACAAATGGCAACCAGCATGACGCCATGATTGTTGAGCTGTCGAAGCAGACGGGA ATGCTGCCAGAGTACAGCAAAATGTGCTTGGAGCAGGTGGATTGGCAGTTTGAAAAGGCCCTGCCTTTATTTCTT GAGAAGAAGGGACAACTTCCCGCCGACGCGTTCGCCTAG
Gene	>OphauG2\|3750 ATGGCGCCTCGGGGTCCGCGATCGTCGGCGAGTACTCGCCAGGCCAAGAGCACCACAAAGGCCAGCACGAGAGCT GGTATCACCAAGCACCGAGGCCCTACAAGAGCAGATATCGATGGCGACATTGACATGGACGCACCCACAAGGGCG TCCAACAGATCTACGGCTGATGGCGCCGGAAACCGGCGTGTCTCTGCCTTGCAAGCCTCCCGAAACACACGAGCC TTGCCTAGGAACCCAAGGCGTGAGATTATCGCCACTCTTGCCTCACGAGTCACGGATCCTTCACAACTACGAGCA AAGCCTGGTTTTGCCGTATTGCGAGTCCATGGCTTGAGTCAAAGCAAGGCGGCCAGCAACCCGGACGGAGGCCTC GAGGATTTGATCGCCTTTCTAAAGCGTAAAGCCTCTTCCTTTGTCAATGGGCCATCGAGACGGCACATTGGCATA CAAAAGGTTAGCTGAATCCCCCCAATGCTTAGATTGACGCCTACTTAGCAGCTCGCCTCCAAGTGTCACAGGGCC GGGGACTACGTATACATTACAGCATCCAAGCGTGACGCCGAGGAACTCGTCAAGATAAACAAGTTTCAATTCGCC GGCACTGCTCTGGAAGTTGTCGCGATGAATCAAGATGCCGTGACCGAGCCGCCTTGTCCAATCCCTCAACATGGT CCCGACTTTCGAGACCTTAACGGGGTCGGCGAGAGCTTTCTGCTCGATTTCTTTGCCATGTTTGATTCGGATCGT CAGGGGTTGATTTCACGCTTCTACGACAAGGACAGTACCTTTTCACTCGCCGTCGACACACAGTCCATCCGGGAT ACTAACGCGCCAGCCCCTTTGCCCTGGTCGGCGTACCTCAAGTTTTCACGAAACCTTCTCAGAATCACGCACCGG AATGCCAGGATTCAGCGACTTTTCAAAGGGGCCAATGTCATCTACGAATTGTGGGCCAACCTGCCACTGACGAGA CATCCAGACGTCAAGTCAAGTTTTGACAAGTACATATTCGACTGTCATCCCGTAGACGGCCTGGCGAACCCCAAC GGCCCGCCACATTCCAACGTTTCGGGCTTAACAGTATCTGCTCACGGGGAATTTGACGAGAGCGATACGCAGACT CACTCGGGAGGGAAGCGAAGTTTTTCGCGTACTTTTGTCCTTGGGCCCGGCCAGAACGGTCAGGGAGCTATTCGA GTCGTCAGCGATGTGCTCATGTTGCGAGCCTACAATGCGCTGCCCGATGTGTCTGCGGCTCCTACGGCAAACGCC GTAACAAATGGCAACCAGCATGACGCCATGATTGTTGAGCTGTCGAAGCAGACGGGAATGCTGCCAGAGTACAGC AAAATGTGCTTGGAGCAGGTGGATTGGCAGTTTGAAAAGGCCCTGCCTTTATTTCTTGAGAAGAAGGTTTGATAC CCATTATTTCCTGTGTTTACGCGGTTATTTGTCTGACATGGTTCAAGGGACAACTTCCCGCCGACGCGTTCGCCT AG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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