© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|3722 |
| Gene name | |
| Location | Contig_29:30074..30839 |
| Strand | + |
| Gene length (bp) | 765 |
| Transcript length (bp) | 705 |
| Coding sequence length (bp) | 705 |
| Protein length (aa) | 235 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11712 | Vma12 | Endoplasmic reticulum-based factor for assembly of V-ATPase | 2.2E-40 | 69 | 211 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0070072 | vacuolar proton-transporting V-type ATPase complex assembly | Yes |
| GO:0070070 | proton-transporting V-type ATPase complex assembly | No |
| GO:0016043 | cellular component organization | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0008150 | biological_process | No |
| GO:0022607 | cellular component assembly | No |
| GO:0070071 | proton-transporting two-sector ATPase complex assembly | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 14 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 153 | 172 | 19 |
| 2 | 182 | 204 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|3722 MVLLTMTRPVVDALSTLDSCPSHGSSADEPLLDEPAVGKPISHTQLLALWRDLQSSPPMSASSPCSLEQLLSGSS VFLPPKPPKPEPSAQYKALMARLRREDAARTYERMVKPPLEARLPPAAQSFAAANRPTSSTDLGDDDVTYAQVHR QLVLILNFIASIVGVGATLWIAARWWSLPARLLLTLGGSILVAVAEVIVYQGYIWRLSQAKSKQQSVQEVKKVVT TWVVAKADE* |
| Coding | >OphauG2|3722 ATGGTGCTCCTCACCATGACGCGGCCCGTCGTCGACGCCTTGTCCACTCTCGACTCTTGCCCCTCGCACGGCTCC TCGGCCGACGAACCGCTGCTCGACGAGCCCGCCGTTGGAAAGCCCATCTCTCACACCCAGCTTCTGGCCCTGTGG CGAGACCTGCAGTCGTCACCGCCAATGTCAGCATCATCGCCGTGTAGCCTGGAGCAGCTCTTGAGTGGCTCAAGC GTCTTTCTGCCTCCCAAGCCGCCCAAGCCGGAGCCTTCTGCCCAGTACAAGGCTCTCATGGCTCGACTCCGTCGC GAAGACGCCGCTCGCACTTACGAGCGCATGGTGAAGCCGCCTCTGGAAGCTCGCCTCCCGCCTGCTGCCCAGTCA TTCGCCGCTGCCAACCGTCCCACAAGCTCAACAGACCTGGGCGACGACGACGTTACATACGCCCAAGTCCATCGT CAACTGGTGCTTATTCTAAACTTTATAGCCAGTATAGTGGGCGTTGGCGCCACGCTTTGGATCGCCGCACGGTGG TGGAGCCTACCCGCACGTCTCCTTCTTACCCTTGGAGGCAGCATTCTCGTGGCTGTTGCTGAAGTAATAGTCTAC CAAGGTTACATCTGGAGATTGAGCCAGGCCAAGTCGAAGCAACAGTCAGTCCAGGAAGTCAAAAAGGTGGTGACC ACCTGGGTTGTAGCCAAGGCTGATGAATGA |
| Transcript | >OphauG2|3722 ATGGTGCTCCTCACCATGACGCGGCCCGTCGTCGACGCCTTGTCCACTCTCGACTCTTGCCCCTCGCACGGCTCC TCGGCCGACGAACCGCTGCTCGACGAGCCCGCCGTTGGAAAGCCCATCTCTCACACCCAGCTTCTGGCCCTGTGG CGAGACCTGCAGTCGTCACCGCCAATGTCAGCATCATCGCCGTGTAGCCTGGAGCAGCTCTTGAGTGGCTCAAGC GTCTTTCTGCCTCCCAAGCCGCCCAAGCCGGAGCCTTCTGCCCAGTACAAGGCTCTCATGGCTCGACTCCGTCGC GAAGACGCCGCTCGCACTTACGAGCGCATGGTGAAGCCGCCTCTGGAAGCTCGCCTCCCGCCTGCTGCCCAGTCA TTCGCCGCTGCCAACCGTCCCACAAGCTCAACAGACCTGGGCGACGACGACGTTACATACGCCCAAGTCCATCGT CAACTGGTGCTTATTCTAAACTTTATAGCCAGTATAGTGGGCGTTGGCGCCACGCTTTGGATCGCCGCACGGTGG TGGAGCCTACCCGCACGTCTCCTTCTTACCCTTGGAGGCAGCATTCTCGTGGCTGTTGCTGAAGTAATAGTCTAC CAAGGTTACATCTGGAGATTGAGCCAGGCCAAGTCGAAGCAACAGTCAGTCCAGGAAGTCAAAAAGGTGGTGACC ACCTGGGTTGTAGCCAAGGCTGATGAATGA |
| Gene | >OphauG2|3722 ATGGTGCTCCTCACCATGACGCGGCCCGTCGTCGACGCCTTGTCCACTCTCGACTCTTGCCCCTCGCACGGCTCC TCGGCCGACGAACCGCTGCTCGACGAGCCCGCCGTTGGAAAGCCCATCTCTCACACCCAGCTTCTGGCCCTGTGG CGAGACCTGCAGTCGTCACCGCCAATGTCAGCATCATCGCCGTGTAGCCTGGAGCAGCTCTTGAGTGGCTCAAGC GTCTTTCTGCCTCCCAAGCCGCCCAAGCCGGAGCCTGTTGGTGCCCTTTGGGTCCCATGACCCTCTGCTGCTGTT GGTTGCTGACTCGTCTTGCAGTCTGCCCAGTACAAGGCTCTCATGGCTCGACTCCGTCGCGAAGACGCCGCTCGC ACTTACGAGCGCATGGTGAAGCCGCCTCTGGAAGCTCGCCTCCCGCCTGCTGCCCAGTCATTCGCCGCTGCCAAC CGTCCCACAAGCTCAACAGACCTGGGCGACGACGACGTTACATACGCCCAAGTCCATCGTCAACTGGTGCTTATT CTAAACTTTATAGCCAGTATAGTGGGCGTTGGCGCCACGCTTTGGATCGCCGCACGGTGGTGGAGCCTACCCGCA CGTCTCCTTCTTACCCTTGGAGGCAGCATTCTCGTGGCTGTTGCTGAAGTAATAGTCTACCAAGGTTACATCTGG AGATTGAGCCAGGCCAAGTCGAAGCAACAGTCAGTCCAGGAAGTCAAAAAGGTGGTGACCACCTGGGTTGTAGCC AAGGCTGATGAATGA |