© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|3656 |
| Gene name | |
| Location | Contig_283:8208..9897 |
| Strand | - |
| Gene length (bp) | 1689 |
| Transcript length (bp) | 1560 |
| Coding sequence length (bp) | 1560 |
| Protein length (aa) | 520 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01169 | UPF0016 | Uncharacterized protein family UPF0016 | 2.3E-20 | 256 | 329 |
| PF01169 | UPF0016 | Uncharacterized protein family UPF0016 | 9.4E-20 | 436 | 509 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38301|GDT1_YEAST | GCR1-dependent translation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDT1 PE=1 SV=1 | 251 | 517 | 9.0E-60 |
| sp|Q10320|YD68_SCHPO | GDT1-like protein C17G8.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G8.08c PE=3 SV=1 | 251 | 517 | 3.0E-53 |
| sp|Q9HC07|TM165_HUMAN | Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1 | 234 | 510 | 4.0E-53 |
| sp|Q4V899|TM165_RAT | Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1 | 234 | 510 | 6.0E-51 |
| sp|P52875|TM165_MOUSE | Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=1 SV=2 | 234 | 510 | 2.0E-50 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P38301|GDT1_YEAST | GCR1-dependent translation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDT1 PE=1 SV=1 | 251 | 517 | 9.0E-60 |
| sp|Q10320|YD68_SCHPO | GDT1-like protein C17G8.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G8.08c PE=3 SV=1 | 251 | 517 | 3.0E-53 |
| sp|Q9HC07|TM165_HUMAN | Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1 | 234 | 510 | 4.0E-53 |
| sp|Q4V899|TM165_RAT | Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1 | 234 | 510 | 6.0E-51 |
| sp|P52875|TM165_MOUSE | Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=1 SV=2 | 234 | 510 | 2.0E-50 |
| sp|Q9P7Q0|YLY5_SCHPO | GDT1-like protein C186.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC186.05c PE=3 SV=1 | 236 | 515 | 2.0E-37 |
| sp|B9G125|GDT15_ORYSJ | GDT1-like protein 5 OS=Oryza sativa subsp. japonica GN=Os08g0433100 PE=2 SV=1 | 251 | 514 | 9.0E-34 |
| sp|Q9SX28|GDT15_ARATH | GDT1-like protein 5 OS=Arabidopsis thaliana GN=At1g68650 PE=1 SV=1 | 251 | 510 | 1.0E-29 |
| sp|Q9T0H9|GDT12_ARATH | GDT1-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=At4g13590 PE=1 SV=2 | 187 | 513 | 8.0E-25 |
| sp|Q2R2Z4|GDT12_ORYSJ | GDT1-like protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0544500 PE=2 SV=1 | 254 | 514 | 4.0E-24 |
| sp|A2ZE50|GDT13_ORYSI | GDT1-like protein 3 OS=Oryza sativa subsp. indica GN=OsI_36063 PE=3 SV=1 | 257 | 341 | 1.0E-18 |
| sp|Q2R4J1|GDT13_ORYSJ | GDT1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0472500 PE=2 SV=1 | 257 | 341 | 1.0E-18 |
| sp|P52876|Y615_SYNY3 | GDT1-like protein sll0615 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0615 PE=3 SV=1 | 435 | 511 | 1.0E-18 |
| sp|A2YXC7|GDT14_ORYSI | GDT1-like protein 4 OS=Oryza sativa subsp. indica GN=OsI_29993 PE=3 SV=1 | 253 | 333 | 2.0E-18 |
| sp|Q6ZIB9|GDT14_ORYSJ | GDT1-like protein 4 OS=Oryza sativa subsp. japonica GN=Os08g0528500 PE=2 SV=1 | 253 | 333 | 2.0E-18 |
| sp|Q93Y38|GDT13_ARATH | GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1 | 425 | 510 | 6.0E-17 |
| sp|Q9C6M1|GDT14_ARATH | GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1 | 251 | 338 | 9.0E-17 |
| sp|Q93Y38|GDT13_ARATH | GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1 | 257 | 333 | 2.0E-16 |
| sp|Q2R4J1|GDT13_ORYSJ | GDT1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0472500 PE=2 SV=1 | 416 | 510 | 3.0E-16 |
| sp|A2ZE50|GDT13_ORYSI | GDT1-like protein 3 OS=Oryza sativa subsp. indica GN=OsI_36063 PE=3 SV=1 | 416 | 510 | 3.0E-16 |
| sp|Q6ZIB9|GDT14_ORYSJ | GDT1-like protein 4 OS=Oryza sativa subsp. japonica GN=Os08g0528500 PE=2 SV=1 | 425 | 510 | 2.0E-15 |
| sp|A2YXC7|GDT14_ORYSI | GDT1-like protein 4 OS=Oryza sativa subsp. indica GN=OsI_29993 PE=3 SV=1 | 425 | 510 | 2.0E-15 |
| sp|Q9C6M1|GDT14_ARATH | GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1 | 429 | 519 | 4.0E-14 |
| sp|P52876|Y615_SYNY3 | GDT1-like protein sll0615 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0615 PE=3 SV=1 | 251 | 363 | 1.0E-13 |
| sp|Q94AX5|GDT11_ARATH | GDT1-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64150 PE=2 SV=2 | 254 | 360 | 3.0E-10 |
| sp|B8AAM2|GDT11_ORYSI | GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_00941 PE=3 SV=2 | 436 | 519 | 2.0E-09 |
| sp|Q5NAY7|GDT11_ORYSJ | GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0221700 PE=3 SV=2 | 436 | 519 | 2.0E-09 |
| sp|B8AAM2|GDT11_ORYSI | GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_00941 PE=3 SV=2 | 254 | 335 | 1.0E-08 |
| sp|Q5NAY7|GDT11_ORYSJ | GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0221700 PE=3 SV=2 | 254 | 335 | 2.0E-08 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 25 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 255 | 277 | 22 |
| 2 | 284 | 306 | 22 |
| 3 | 316 | 333 | 17 |
| 4 | 421 | 443 | 22 |
| 5 | 463 | 485 | 22 |
| 6 | 492 | 514 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|3656 MWSNGLHSPLLLLLLLPSLATSLAAPPPTPRRQDDSISPYDDDAAAKPQTGLANKAAAPFDDGKPHTGPFVETDG KATDSNAQDLPPLKGRPRDPTIVDGKKIPESNDGVMFDKNRQRPLEGTTGTEGGVSQKALARKAKEGKTGEKVLT QPESPKERPPLPHSEEQKLGTVDVRSKLKSKQSSDKDEDNTDYTGLDKPANLPDTGREKTNPLPKSADKDHLETS QPILTSTRTPKPPLETTDQDGIIQPLHSFVLSLAMILVSEVGDKTFLVAALMAMKHDRIVVFSAAYGALVVMTVL SAVLGHAVPTLIPKKLTSLLAAVLFLVFGVKLLREGMQMNPDEGVSAEMQEVEQELAEKEKELGRRGRASISAHS LEMGFQGRKSRTKNRFPSPPRSPSQSPSPSVSPSRQTGSIDTLVQGVGNLCSLLLSPAWVQTFAMTFLGEWGDRS QIATIAMAAGQDYWWVTLGALCGHAVCTGVAVVGGRAIAGRVSLKVVTVGGAVAFLFFALLYFIESLRS* |
| Coding | >OphauG2|3656 ATGTGGTCCAACGGCCTACATTCACCACTGCTTCTTCTTCTTCTTCTTCCTTCGCTCGCTACCTCATTGGCCGCC CCTCCACCAACTCCCCGCAGACAGGACGACTCCATCTCCCCCTACGACGATGACGCAGCTGCAAAGCCTCAAACC GGCCTCGCAAACAAGGCTGCAGCCCCCTTTGACGACGGAAAGCCACATACCGGCCCCTTTGTCGAGACGGACGGA AAAGCCACCGATTCCAACGCCCAGGACTTGCCCCCTCTAAAAGGCCGACCCCGCGATCCCACCATTGTCGACGGC AAAAAGATACCCGAGTCCAATGATGGCGTCATGTTTGACAAGAACCGCCAGCGGCCTCTAGAGGGCACAACTGGC ACCGAGGGTGGCGTTTCGCAAAAGGCGCTGGCACGCAAAGCCAAGGAGGGAAAGACGGGCGAAAAGGTGCTCACA CAACCAGAGTCCCCCAAAGAGCGTCCGCCTTTGCCTCACAGCGAAGAACAAAAACTCGGCACTGTGGATGTACGG AGCAAGCTCAAGTCCAAGCAGTCTTCTGACAAGGACGAGGACAATACCGACTATACTGGTCTCGATAAACCCGCC AATCTGCCCGACACTGGACGCGAAAAGACGAACCCACTGCCCAAGTCTGCCGATAAAGACCATCTCGAGACATCT CAACCCATTTTGACCTCGACACGCACTCCCAAGCCTCCTCTGGAAACCACGGACCAGGATGGCATTATCCAGCCT CTTCACTCCTTTGTCTTGTCCCTTGCCATGATTCTTGTCTCCGAAGTGGGCGACAAGACATTCTTGGTGGCCGCT CTCATGGCCATGAAGCACGACCGCATTGTCGTCTTTTCAGCTGCCTATGGTGCCCTTGTCGTCATGACAGTTCTC TCAGCCGTTCTTGGGCACGCAGTCCCCACATTGATACCCAAGAAGCTGACGAGCCTTCTCGCTGCCGTCCTATTT CTCGTTTTTGGCGTCAAGCTTCTCCGGGAAGGCATGCAGATGAACCCTGACGAGGGCGTCAGTGCCGAAATGCAG GAAGTAGAGCAAGAGCTGGCTGAAAAAGAAAAGGAGCTTGGACGACGCGGACGTGCCTCCATCTCGGCGCATTCT CTCGAAATGGGCTTCCAGGGAAGAAAGTCACGCACCAAGAACCGCTTTCCCTCGCCCCCTCGCTCCCCATCACAG TCGCCATCGCCATCCGTGAGTCCTTCTCGCCAAACGGGATCAATTGACACCCTTGTCCAAGGGGTTGGCAACTTG TGTTCGCTATTGCTGAGCCCTGCATGGGTGCAAACATTTGCCATGACGTTTTTGGGCGAATGGGGAGATCGTAGC CAGATTGCCACCATTGCCATGGCTGCCGGACAAGACTACTGGTGGGTAACACTGGGCGCTTTGTGTGGGCATGCC GTCTGCACTGGCGTTGCTGTCGTTGGCGGCCGGGCTATCGCGGGGCGAGTCAGTCTCAAAGTTGTCACTGTTGGT GGAGCCGTTGCCTTTCTCTTCTTTGCCTTGCTCTACTTTATTGAGTCTCTACGCTCATAG |
| Transcript | >OphauG2|3656 ATGTGGTCCAACGGCCTACATTCACCACTGCTTCTTCTTCTTCTTCTTCCTTCGCTCGCTACCTCATTGGCCGCC CCTCCACCAACTCCCCGCAGACAGGACGACTCCATCTCCCCCTACGACGATGACGCAGCTGCAAAGCCTCAAACC GGCCTCGCAAACAAGGCTGCAGCCCCCTTTGACGACGGAAAGCCACATACCGGCCCCTTTGTCGAGACGGACGGA AAAGCCACCGATTCCAACGCCCAGGACTTGCCCCCTCTAAAAGGCCGACCCCGCGATCCCACCATTGTCGACGGC AAAAAGATACCCGAGTCCAATGATGGCGTCATGTTTGACAAGAACCGCCAGCGGCCTCTAGAGGGCACAACTGGC ACCGAGGGTGGCGTTTCGCAAAAGGCGCTGGCACGCAAAGCCAAGGAGGGAAAGACGGGCGAAAAGGTGCTCACA CAACCAGAGTCCCCCAAAGAGCGTCCGCCTTTGCCTCACAGCGAAGAACAAAAACTCGGCACTGTGGATGTACGG AGCAAGCTCAAGTCCAAGCAGTCTTCTGACAAGGACGAGGACAATACCGACTATACTGGTCTCGATAAACCCGCC AATCTGCCCGACACTGGACGCGAAAAGACGAACCCACTGCCCAAGTCTGCCGATAAAGACCATCTCGAGACATCT CAACCCATTTTGACCTCGACACGCACTCCCAAGCCTCCTCTGGAAACCACGGACCAGGATGGCATTATCCAGCCT CTTCACTCCTTTGTCTTGTCCCTTGCCATGATTCTTGTCTCCGAAGTGGGCGACAAGACATTCTTGGTGGCCGCT CTCATGGCCATGAAGCACGACCGCATTGTCGTCTTTTCAGCTGCCTATGGTGCCCTTGTCGTCATGACAGTTCTC TCAGCCGTTCTTGGGCACGCAGTCCCCACATTGATACCCAAGAAGCTGACGAGCCTTCTCGCTGCCGTCCTATTT CTCGTTTTTGGCGTCAAGCTTCTCCGGGAAGGCATGCAGATGAACCCTGACGAGGGCGTCAGTGCCGAAATGCAG GAAGTAGAGCAAGAGCTGGCTGAAAAAGAAAAGGAGCTTGGACGACGCGGACGTGCCTCCATCTCGGCGCATTCT CTCGAAATGGGCTTCCAGGGAAGAAAGTCACGCACCAAGAACCGCTTTCCCTCGCCCCCTCGCTCCCCATCACAG TCGCCATCGCCATCCGTGAGTCCTTCTCGCCAAACGGGATCAATTGACACCCTTGTCCAAGGGGTTGGCAACTTG TGTTCGCTATTGCTGAGCCCTGCATGGGTGCAAACATTTGCCATGACGTTTTTGGGCGAATGGGGAGATCGTAGC CAGATTGCCACCATTGCCATGGCTGCCGGACAAGACTACTGGTGGGTAACACTGGGCGCTTTGTGTGGGCATGCC GTCTGCACTGGCGTTGCTGTCGTTGGCGGCCGGGCTATCGCGGGGCGAGTCAGTCTCAAAGTTGTCACTGTTGGT GGAGCCGTTGCCTTTCTCTTCTTTGCCTTGCTCTACTTTATTGAGTCTCTACGCTCATAG |
| Gene | >OphauG2|3656 ATGTGGTCCAACGGCCTACATTCACCACTGCTTCTTCTTCTTCTTCTTCCTTCGCTCGCTACCTCATTGGCCGCC CCTCCACCAACTCCCCGCAGACAGGACGACTCCATCTCCCCCTACGACGATGACGCAGCTGCAAAGCCTCAAACC GGCCTCGCAAACAAGGCTGCAGCCCCCTTTGACGACGGAAAGCCACATACCGGCCCCTTTGTCGAGACGGACGGA AAAGCCACCGATTCCAACGCCCAGGACTTGCCCCCTCTAAAAGGCCGACCCCGCGATCCCACCATTGTCGACGGC AAAAAGATACCCGAGTCCAATGATGGCGTCATGTTTGACAAGAACCGCCAGCGGCCTCTAGAGGGCACAACTGGC ACCGAGGGTGGCGTTTCGCAAAAGGCGCTGGCACGCAAAGCCAAGGAGGGAAAGACGGGCGAAAAGGTGCTCACA CAACCAGAGTCCCCCAAAGAGCGTCCGCCTTTGCCTCACAGCGAAGAACAAAAACTCGGCACTGTGGATGTACGG AGCAAGCTCAAGTCCAAGCAGTCTTCTGACAAGGACGAGGACAATACCGACTATACTGGTCTCGATGTTCGTCTC AATCCTGCATCTTGTGTCTGACATGCACAAAGAAGCCTTACTGACATGGTGCCCTGCGTCCAGAAACCCGCCAAT CTGCCCGACACTGGACGCGAAAAGACGAACCCACTGCCCAAGTCTGCCGATAAAGACCATCTCGAGACATCTCAA CCCATTTTGACCTCGACACGCACTCCCAAGCCTCCTCTGGAAACCACGGACCAGGATGGCATTATCCAGCCTCTT CACTCCTTTGTCTTGTCCCTTGCCATGATTCTTGTCTCCGAAGTGGGCGACAAGACATTCTTGGTGGCCGCTCTC ATGGCCATGAAGCACGACCGCATTGTCGTCTTTTCAGCTGCCTATGGTGCCCTTGTCGTCATGACAGTTCTCTCA GCCGTTCTTGGGCACGCAGTCCCCACATTGATACCCAAGAAGCTGACGAGCCTTCTCGCTGCCGTCCTATTTCTC GTTTTTGGCGTCAAGCTTCTCCGGGAAGGCATGCAGATGAACCCTGACGAGGGCGTCAGTGCCGAAATGCAGGAA GTAGAGCAAGAGCTGGCTGAAAAAGAAAAGGAGCTTGGACGACGCGGACGTGCCTCCATCTCGGCGCATTCTCTC GAAATGGGCTTCCAGGGAAGAAAGTCACGCACCAAGAACCGCTTTCCCTCGCCCCCTCGCTCCCCATCACAGTCG CCATCGCCATCCGTGAGTCCTTCTCGCCAAACGGGATCAATTGACACCCTTGTCCAAGGGGTTGGCAACTTGTGT TCGCTATTGCTGAGCCCTGCATGGGTGCAAACATTTGCCATGACGTTTTTGGGCGAATGGGGAGATCGTAGCCAG ATTGCCACCATTGCCATGGCTGCCGGACAAGACTACTGGTGGGTAACACTGGGCGCTTTGTGTGGGCATGCCGTC TGCACTGGCGTTGCTGTCGTTGGCGGCCGGGCTATCGCGGGGCGAGTCAGTCTCAAAGTTGGTAAGTTTGCTGCC AAATAATCATGTCTGCCGCAATATCAATCTGACAAGCCAATAGTCACTGTTGGTGGAGCCGTTGCCTTTCTCTTC TTTGCCTTGCTCTACTTTATTGAGTCTCTACGCTCATAG |