Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|3554
Gene name
Location	Contig_273:4239..4977
Strand	+
Gene length (bp)	738
Transcript length (bp)	738
Coding sequence length (bp)	738
Protein length (aa)	246

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF16835	SF3A2	Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11)	6.0E-34	127	221
PF12874	zf-met	Zinc-finger of C2H2 type	6.1E-06	54	78

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9P7L8\|SAP62_SCHPO	Pre-mRNA-splicing factor sap62 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap62 PE=1 SV=1	1	215	6.0E-84
sp\|Q15428\|SF3A2_HUMAN	Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2	1	231	1.0E-82
sp\|Q6AXT8\|SF3A2_RAT	Splicing factor 3A subunit 2 OS=Rattus norvegicus GN=Sf3a2 PE=2 SV=1	1	231	5.0E-82
sp\|A5PJN8\|SF3A2_BOVIN	Splicing factor 3A subunit 2 OS=Bos taurus GN=SF3A2 PE=2 SV=1	1	231	6.0E-82
sp\|Q62203\|SF3A2_MOUSE	Splicing factor 3A subunit 2 OS=Mus musculus GN=Sf3a2 PE=1 SV=2	1	231	5.0E-75

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9P7L8\|SAP62_SCHPO	Pre-mRNA-splicing factor sap62 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap62 PE=1 SV=1	1	215	6.0E-84
sp\|Q15428\|SF3A2_HUMAN	Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2	1	231	1.0E-82
sp\|Q6AXT8\|SF3A2_RAT	Splicing factor 3A subunit 2 OS=Rattus norvegicus GN=Sf3a2 PE=2 SV=1	1	231	5.0E-82
sp\|A5PJN8\|SF3A2_BOVIN	Splicing factor 3A subunit 2 OS=Bos taurus GN=SF3A2 PE=2 SV=1	1	231	6.0E-82
sp\|Q62203\|SF3A2_MOUSE	Splicing factor 3A subunit 2 OS=Mus musculus GN=Sf3a2 PE=1 SV=2	1	231	5.0E-75
sp\|Q54B65\|SF3A2_DICDI	Splicing factor 3A subunit 2 OS=Dictyostelium discoideum GN=sf3a2 PE=3 SV=1	10	227	2.0E-72
sp\|Q07350\|PRP11_YEAST	Pre-mRNA-splicing factor PRP11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP11 PE=1 SV=1	1	233	1.0E-14

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|3554 MDYQNRAGSKFGGGGVASYSATNADRRERLRKLALETIDLDKDPYFFKNHVGSFECRLCLTVHQNDGSYLAHTQG KKHQTNLARRAARELREGRSSAAPGSQNAANPDSATGSSSAHPLPRRNLVKIGRPGYKITKIRDPVSRQQGLLFQ LQYPETAPDIPPNWHVMSAFTQRIEEPDKNFQYLLVAAEPYETVAFKIPARELDKREDRQFCYWDRDSKEFWIQV MFMTEREQRFNAAPGLTGRT*
Coding	>OphauG2\|3554 ATGGACTACCAGAACCGCGCCGGCTCCAAATTCGGCGGCGGCGGCGTCGCCTCTTACTCGGCCACAAACGCTGAC CGCCGTGAGCGCCTTCGCAAACTTGCCCTCGAGACAATTGATCTTGACAAGGACCCCTACTTCTTCAAGAACCAC GTTGGCTCCTTTGAGTGCCGCCTCTGTCTTACCGTCCACCAAAATGACGGCTCCTACCTCGCACATACCCAGGGC AAGAAGCATCAGACCAACCTGGCCCGACGCGCCGCCCGCGAGCTGCGCGAAGGCCGCTCCAGTGCTGCCCCAGGC AGCCAAAACGCCGCCAACCCCGATTCCGCCACTGGCTCGTCTTCGGCTCATCCTCTTCCCCGCCGCAACCTTGTC AAGATTGGCCGTCCTGGCTATAAAATCACAAAAATTCGCGACCCAGTCTCCCGTCAGCAGGGCCTTCTCTTCCAG CTCCAGTACCCCGAAACTGCTCCCGACATCCCCCCAAACTGGCACGTCATGAGTGCTTTTACTCAGCGCATTGAA GAGCCCGACAAGAATTTTCAGTATCTCCTGGTTGCCGCTGAACCCTACGAGACTGTCGCCTTCAAGATTCCCGCC CGCGAGCTCGACAAGCGTGAGGACCGCCAGTTTTGCTACTGGGACCGCGACTCCAAAGAGTTTTGGATTCAAGTC ATGTTTATGACTGAGCGGGAACAGCGCTTCAATGCTGCTCCTGGCTTGACTGGGCGTACTTGA
Transcript	>OphauG2\|3554 ATGGACTACCAGAACCGCGCCGGCTCCAAATTCGGCGGCGGCGGCGTCGCCTCTTACTCGGCCACAAACGCTGAC CGCCGTGAGCGCCTTCGCAAACTTGCCCTCGAGACAATTGATCTTGACAAGGACCCCTACTTCTTCAAGAACCAC GTTGGCTCCTTTGAGTGCCGCCTCTGTCTTACCGTCCACCAAAATGACGGCTCCTACCTCGCACATACCCAGGGC AAGAAGCATCAGACCAACCTGGCCCGACGCGCCGCCCGCGAGCTGCGCGAAGGCCGCTCCAGTGCTGCCCCAGGC AGCCAAAACGCCGCCAACCCCGATTCCGCCACTGGCTCGTCTTCGGCTCATCCTCTTCCCCGCCGCAACCTTGTC AAGATTGGCCGTCCTGGCTATAAAATCACAAAAATTCGCGACCCAGTCTCCCGTCAGCAGGGCCTTCTCTTCCAG CTCCAGTACCCCGAAACTGCTCCCGACATCCCCCCAAACTGGCACGTCATGAGTGCTTTTACTCAGCGCATTGAA GAGCCCGACAAGAATTTTCAGTATCTCCTGGTTGCCGCTGAACCCTACGAGACTGTCGCCTTCAAGATTCCCGCC CGCGAGCTCGACAAGCGTGAGGACCGCCAGTTTTGCTACTGGGACCGCGACTCCAAAGAGTTTTGGATTCAAGTC ATGTTTATGACTGAGCGGGAACAGCGCTTCAATGCTGCTCCTGGCTTGACTGGGCGTACTTGA
Gene	>OphauG2\|3554 ATGGACTACCAGAACCGCGCCGGCTCCAAATTCGGCGGCGGCGGCGTCGCCTCTTACTCGGCCACAAACGCTGAC CGCCGTGAGCGCCTTCGCAAACTTGCCCTCGAGACAATTGATCTTGACAAGGACCCCTACTTCTTCAAGAACCAC GTTGGCTCCTTTGAGTGCCGCCTCTGTCTTACCGTCCACCAAAATGACGGCTCCTACCTCGCACATACCCAGGGC AAGAAGCATCAGACCAACCTGGCCCGACGCGCCGCCCGCGAGCTGCGCGAAGGCCGCTCCAGTGCTGCCCCAGGC AGCCAAAACGCCGCCAACCCCGATTCCGCCACTGGCTCGTCTTCGGCTCATCCTCTTCCCCGCCGCAACCTTGTC AAGATTGGCCGTCCTGGCTATAAAATCACAAAAATTCGCGACCCAGTCTCCCGTCAGCAGGGCCTTCTCTTCCAG CTCCAGTACCCCGAAACTGCTCCCGACATCCCCCCAAACTGGCACGTCATGAGTGCTTTTACTCAGCGCATTGAA GAGCCCGACAAGAATTTTCAGTATCTCCTGGTTGCCGCTGAACCCTACGAGACTGTCGCCTTCAAGATTCCCGCC CGCGAGCTCGACAAGCGTGAGGACCGCCAGTTTTGCTACTGGGACCGCGACTCCAAAGAGTTTTGGATTCAAGTC ATGTTTATGACTGAGCGGGAACAGCGCTTCAATGCTGCTCCTGGCTTGACTGGGCGTACTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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