© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|3195 |
| Gene name | |
| Location | Contig_236:19617..22063 |
| Strand | - |
| Gene length (bp) | 2446 |
| Transcript length (bp) | 1089 |
| Coding sequence length (bp) | 1089 |
| Protein length (aa) | 363 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.9E-14 | 101 | 169 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.1E-14 | 215 | 285 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P3U1|YKX5_SCHPO | Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=3 SV=3 | 95 | 305 | 2.0E-57 |
| sp|Q9P3U1|YKX5_SCHPO | Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=3 SV=3 | 93 | 295 | 8.0E-29 |
| sp|Q62826|HNRPM_RAT | Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4 | 94 | 301 | 5.0E-27 |
| sp|Q9D0E1|HNRPM_MOUSE | Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus GN=Hnrnpm PE=1 SV=3 | 94 | 301 | 8.0E-27 |
| sp|P38922|HRB1_YEAST | Protein HRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRB1 PE=1 SV=2 | 25 | 288 | 1.0E-26 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P3U1|YKX5_SCHPO | Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=3 SV=3 | 95 | 305 | 2.0E-57 |
| sp|Q9P3U1|YKX5_SCHPO | Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=3 SV=3 | 93 | 295 | 8.0E-29 |
| sp|Q62826|HNRPM_RAT | Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4 | 94 | 301 | 5.0E-27 |
| sp|Q9D0E1|HNRPM_MOUSE | Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus GN=Hnrnpm PE=1 SV=3 | 94 | 301 | 8.0E-27 |
| sp|P38922|HRB1_YEAST | Protein HRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRB1 PE=1 SV=2 | 25 | 288 | 1.0E-26 |
| sp|P52272|HNRPM_HUMAN | Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3 | 94 | 301 | 3.0E-26 |
| sp|Q8C854|MYEF2_MOUSE | Myelin expression factor 2 OS=Mus musculus GN=Myef2 PE=1 SV=1 | 100 | 291 | 7.0E-26 |
| sp|Q9P2K5|MYEF2_HUMAN | Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3 | 100 | 291 | 2.0E-25 |
| sp|P25555|GBP2_YEAST | Single-strand telomeric DNA-binding protein GBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GBP2 PE=1 SV=1 | 101 | 293 | 1.0E-24 |
| sp|P25555|GBP2_YEAST | Single-strand telomeric DNA-binding protein GBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GBP2 PE=1 SV=1 | 82 | 288 | 2.0E-18 |
| sp|Q8VE97|SRSF4_MOUSE | Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4 PE=2 SV=1 | 100 | 292 | 1.0E-17 |
| sp|Q08170|SRSF4_HUMAN | Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4 PE=1 SV=2 | 100 | 292 | 1.0E-17 |
| sp|P38922|HRB1_YEAST | Protein HRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRB1 PE=1 SV=2 | 90 | 288 | 2.0E-16 |
| sp|P49314|ROC2_NICPL | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1 | 97 | 288 | 2.0E-13 |
| sp|Q08937|ROC2_NICSY | 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 | 97 | 288 | 2.0E-13 |
| sp|Q13310|PABP4_HUMAN | Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1 | 80 | 278 | 8.0E-13 |
| sp|Q62826|HNRPM_RAT | Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4 | 214 | 294 | 1.0E-11 |
| sp|Q9D0E1|HNRPM_MOUSE | Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus GN=Hnrnpm PE=1 SV=3 | 214 | 294 | 1.0E-11 |
| sp|P52272|HNRPM_HUMAN | Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3 | 214 | 294 | 1.0E-11 |
| sp|P0CB38|PAB4L_HUMAN | Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1 | 80 | 278 | 3.0E-11 |
| sp|Q9P2K5|MYEF2_HUMAN | Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3 | 212 | 294 | 9.0E-11 |
| sp|P42731|PABP2_ARATH | Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1 | 101 | 284 | 1.0E-10 |
| sp|Q62826|HNRPM_RAT | Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4 | 100 | 177 | 2.0E-10 |
| sp|Q9D0E1|HNRPM_MOUSE | Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus GN=Hnrnpm PE=1 SV=3 | 100 | 177 | 2.0E-10 |
| sp|P52272|HNRPM_HUMAN | Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3 | 100 | 177 | 2.0E-10 |
| sp|Q8C854|MYEF2_MOUSE | Myelin expression factor 2 OS=Mus musculus GN=Myef2 PE=1 SV=1 | 212 | 294 | 2.0E-10 |
| sp|P78814|SRP2_SCHPO | Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp2 PE=1 SV=2 | 100 | 177 | 2.0E-10 |
| sp|G3V6S8|SRSF6_RAT | Serine/arginine-rich splicing factor 6 OS=Rattus norvegicus GN=Srsf6 PE=1 SV=1 | 100 | 292 | 3.0E-10 |
| sp|Q3TWW8|SRSF6_MOUSE | Serine/arginine-rich splicing factor 6 OS=Mus musculus GN=Srsf6 PE=1 SV=1 | 100 | 292 | 3.0E-10 |
| sp|Q86U06|RBM23_HUMAN | Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1 | 24 | 288 | 4.0E-10 |
| sp|Q9ZUU4|CP29B_ARATH | RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1 | 71 | 290 | 4.0E-10 |
| sp|Q8C854|MYEF2_MOUSE | Myelin expression factor 2 OS=Mus musculus GN=Myef2 PE=1 SV=1 | 100 | 177 | 5.0E-10 |
| sp|O13845|RSD1_SCHPO | RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rsd1 PE=1 SV=2 | 91 | 304 | 5.0E-10 |
| sp|Q13247|SRSF6_HUMAN | Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6 PE=1 SV=2 | 100 | 292 | 9.0E-10 |
| sp|Q9P2K5|MYEF2_HUMAN | Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3 | 100 | 177 | 1.0E-09 |
| sp|P28644|ROC1_SPIOL | 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1 | 97 | 289 | 1.0E-09 |
| sp|Q4VXU2|PAP1L_HUMAN | Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1 | 101 | 286 | 2.0E-09 |
| sp|Q9H361|PABP3_HUMAN | Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2 | 101 | 288 | 2.0E-09 |
| sp|Q3B7L6|SRSF6_BOVIN | Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2 SV=1 | 100 | 292 | 3.0E-09 |
| sp|P26686|SRR55_DROME | Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1 SV=4 | 100 | 174 | 3.0E-09 |
| sp|Q13310|PABP4_HUMAN | Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1 | 101 | 288 | 4.0E-09 |
| sp|P26686|SRR55_DROME | Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1 SV=4 | 100 | 291 | 4.0E-09 |
| sp|P19682|ROC3_NICSY | 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 | 97 | 289 | 5.0E-09 |
| sp|P20397|NUCL_XENLA | Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3 | 101 | 288 | 6.0E-09 |
| sp|P31209|PABP_SCHPO | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab1 PE=1 SV=2 | 84 | 288 | 8.0E-09 |
| sp|P21187|PABP_DROME | Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3 | 61 | 278 | 8.0E-09 |
| sp|P49313|ROC1_NICPL | 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1 | 94 | 288 | 1.0E-08 |
| sp|P60050|PABP5_PONPY | Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1 | 78 | 278 | 2.0E-08 |
| sp|P60049|PABP5_PANTR | Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1 | 78 | 278 | 2.0E-08 |
| sp|P60048|PABP5_HYLLA | Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1 | 78 | 278 | 2.0E-08 |
| sp|Q96DU9|PABP5_HUMAN | Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1 | 78 | 278 | 2.0E-08 |
| sp|P60047|PABP5_GORGO | Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1 | 78 | 278 | 2.0E-08 |
| sp|Q7JGR2|PABP5_MACMU | Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1 | 78 | 278 | 2.0E-08 |
| sp|A3LXL0|PABP_PICST | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1 | 84 | 288 | 2.0E-08 |
| sp|Q09167|SRSF5_RAT | Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus GN=Srsf5 PE=1 SV=1 | 77 | 173 | 3.0E-08 |
| sp|O35326|SRSF5_MOUSE | Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5 PE=1 SV=2 | 77 | 173 | 3.0E-08 |
| sp|Q13243|SRSF5_HUMAN | Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5 PE=1 SV=1 | 77 | 173 | 3.0E-08 |
| sp|Q2GSX8|PABP_CHAGB | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1 | 86 | 288 | 3.0E-08 |
| sp|Q5R8F7|PABP1_PONAB | Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1 | 101 | 288 | 3.0E-08 |
| sp|P11940|PABP1_HUMAN | Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2 | 101 | 288 | 3.0E-08 |
| sp|P61286|PABP1_BOVIN | Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1 | 101 | 288 | 3.0E-08 |
| sp|P0CP46|PABP_CRYNJ | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1 | 84 | 278 | 3.0E-08 |
| sp|P0CP47|PABP_CRYNB | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PAB1 PE=3 SV=1 | 84 | 278 | 3.0E-08 |
| sp|Q39061|CP33_ARATH | RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1 | 100 | 286 | 4.0E-08 |
| sp|A5DM21|PABP_PICGU | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1 PE=3 SV=2 | 84 | 288 | 4.0E-08 |
| sp|Q6BI95|PABP_DEBHA | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2 | 84 | 288 | 5.0E-08 |
| sp|Q08935|ROC1_NICSY | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 | 94 | 288 | 6.0E-08 |
| sp|P19338|NUCL_HUMAN | Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3 | 99 | 286 | 6.0E-08 |
| sp|Q5RF26|NUCL_PONAB | Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3 | 99 | 286 | 6.0E-08 |
| sp|Q5R8F7|PABP1_PONAB | Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1 | 80 | 278 | 7.0E-08 |
| sp|P11940|PABP1_HUMAN | Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2 | 80 | 278 | 7.0E-08 |
| sp|P61286|PABP1_BOVIN | Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1 | 80 | 278 | 7.0E-08 |
| sp|Q4R4J7|NUCL_MACFA | Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3 | 99 | 286 | 7.0E-08 |
| sp|P15771|NUCL_CHICK | Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1 | 79 | 315 | 8.0E-08 |
| sp|Q9EPH8|PABP1_RAT | Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=1 SV=1 | 101 | 288 | 9.0E-08 |
| sp|P29341|PABP1_MOUSE | Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2 | 101 | 288 | 1.0E-07 |
| sp|P19683|ROC4_NICSY | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 | 100 | 292 | 1.0E-07 |
| sp|P0CB38|PAB4L_HUMAN | Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1 | 101 | 288 | 2.0E-07 |
| sp|Q9EPH8|PABP1_RAT | Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=1 SV=1 | 80 | 278 | 2.0E-07 |
| sp|P29341|PABP1_MOUSE | Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2 | 80 | 278 | 2.0E-07 |
| sp|P20965|PABPA_XENLA | Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a PE=1 SV=3 | 101 | 288 | 2.0E-07 |
| sp|A1D4K4|PABP_NEOFI | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1 | 83 | 288 | 2.0E-07 |
| sp|P42731|PABP2_ARATH | Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1 | 94 | 292 | 3.0E-07 |
| sp|P78814|SRP2_SCHPO | Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp2 PE=1 SV=2 | 100 | 291 | 3.0E-07 |
| sp|Q6IP09|PABPB_XENLA | Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b PE=2 SV=1 | 80 | 278 | 3.0E-07 |
| sp|P42731|PABP2_ARATH | Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1 | 77 | 175 | 4.0E-07 |
| sp|Q9H361|PABP3_HUMAN | Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2 | 83 | 278 | 4.0E-07 |
| sp|Q4WK03|PABP_ASPFU | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1 | 83 | 288 | 4.0E-07 |
| sp|P09405|NUCL_MOUSE | Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2 | 99 | 286 | 5.0E-07 |
| sp|Q7XTT4|NUCL2_ORYSJ | Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2 SV=2 | 99 | 176 | 7.0E-07 |
| sp|Q0CR95|PABP_ASPTN | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1 | 83 | 288 | 7.0E-07 |
| sp|Q09167|SRSF5_RAT | Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus GN=Srsf5 PE=1 SV=1 | 100 | 290 | 8.0E-07 |
| sp|O35326|SRSF5_MOUSE | Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5 PE=1 SV=2 | 100 | 290 | 8.0E-07 |
| sp|Q13243|SRSF5_HUMAN | Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5 PE=1 SV=1 | 100 | 290 | 8.0E-07 |
| sp|A1CRM1|PABP_ASPCL | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1 | 83 | 233 | 8.0E-07 |
| sp|P08199|NUCL_MESAU | Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2 | 99 | 286 | 8.0E-07 |
| sp|Q4VXU2|PAP1L_HUMAN | Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1 | 101 | 278 | 1.0E-06 |
| sp|P20965|PABPA_XENLA | Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a PE=1 SV=3 | 80 | 278 | 1.0E-06 |
| sp|Q54BM2|PAP1A_DICDI | Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1 | 101 | 324 | 1.0E-06 |
| sp|O22173|PABP4_ARATH | Polyadenylate-binding protein 4 OS=Arabidopsis thaliana GN=PAB4 PE=1 SV=1 | 101 | 284 | 1.0E-06 |
| sp|Q7S6N6|PABP_NEUCR | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pabp-1 PE=3 SV=1 | 101 | 288 | 2.0E-06 |
| sp|Q1DXH0|PABP_COCIM | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1 | 86 | 288 | 2.0E-06 |
| sp|Q6GR16|EPABB_XENLA | Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-b PE=2 SV=1 | 101 | 278 | 2.0E-06 |
| sp|Q9WX37|RBPE_NOSS1 | Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rbpE PE=3 SV=3 | 215 | 307 | 2.0E-06 |
| sp|Q8L719|THO4B_ARATH | THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1 | 212 | 289 | 2.0E-06 |
| sp|Q6IP09|PABPB_XENLA | Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b PE=2 SV=1 | 101 | 288 | 3.0E-06 |
| sp|O22173|PABP4_ARATH | Polyadenylate-binding protein 4 OS=Arabidopsis thaliana GN=PAB4 PE=1 SV=1 | 101 | 278 | 3.0E-06 |
| sp|Q9P2K5|MYEF2_HUMAN | Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3 | 101 | 179 | 5.0E-06 |
| sp|Q4P8R9|PABP_USTMA | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1 | 84 | 288 | 5.0E-06 |
| sp|A4QUF0|PABP_MAGO7 | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=PAB1 PE=3 SV=1 | 86 | 288 | 5.0E-06 |
| sp|Q98SP8|EPABA_XENLA | Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-a PE=1 SV=2 | 101 | 278 | 5.0E-06 |
| sp|Q6DEY7|EPAB_XENTR | Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1 | 101 | 278 | 5.0E-06 |
| sp|O64380|PABP3_ARATH | Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1 | 77 | 201 | 5.0E-06 |
| sp|Q61545|EWS_MOUSE | RNA-binding protein EWS OS=Mus musculus GN=Ewsr1 PE=1 SV=2 | 215 | 288 | 5.0E-06 |
| sp|Q54BM2|PAP1A_DICDI | Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1 | 101 | 278 | 6.0E-06 |
| sp|Q23120|RSP2_CAEEL | Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis elegans GN=rsp-2 PE=3 SV=1 | 100 | 291 | 6.0E-06 |
| sp|P21187|PABP_DROME | Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3 | 101 | 288 | 7.0E-06 |
| sp|Q8L773|THO4A_ARATH | THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1 | 212 | 289 | 8.0E-06 |
| sp|Q05196|PABP5_ARATH | Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=3 | 101 | 278 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|3195 MADPGDTYRPRERSRSPRRRSRSPGRQSRRRSYSPRSRSNSRDDQRRGRDRTPMTAAGTPGGGSVAGFGGQVSNR SYEDRAATREQRMNSLRENSQQDRRVYVGNLSYDVKWHHLKDFMRQAGEVIFADVLLLPNGMSKGCGIVEYATRD QAQQAVTQLSNQNLMGRLVYVREDREAEPRFIGSSGGNRGGFGNSMTGFNHAYSGTATSAGGRQVYVANLPYNVG WQDLKDLFRQATRMGNVFRADVHVGHDGRPKGSGVVVFESPDDARNAIQQFNGYDWQGRLLDVHEDRFASTGGTS FSGRGGYGGGMRGGFGNNFGRGGFGGGHAGFGFGARGGFSGGGSGSGSGSGNGNGGSKGRRY* |
| Coding | >OphauG2|3195 ATGGCCGACCCTGGCGACACTTACCGACCCCGCGAGAGGTCTCGATCGCCTCGTCGACGCTCTAGAAGTCCTGGC AGACAGTCTCGCCGCCGTTCTTATTCTCCACGCAGCAGATCAAACAGCCGAGACGACCAGCGACGTGGCCGTGAT CGTACACCCATGACGGCAGCAGGCACACCAGGTGGTGGATCTGTCGCTGGCTTTGGCGGCCAAGTCAGCAATCGG TCGTACGAGGATCGCGCCGCCACACGCGAGCAAAGAATGAACAGTCTTCGCGAGAATTCGCAACAGGATCGCCGC GTCTATGTCGGTAATCTTTCTTACGACGTAAAATGGCACCACCTTAAAGACTTTATGAGACAAGCTGGAGAAGTC ATATTTGCCGATGTATTGCTTCTACCCAATGGCATGTCCAAGGGATGCGGCATCGTCGAATACGCCACAAGAGAT CAGGCTCAACAAGCTGTAACTCAACTCAGCAACCAAAATCTCATGGGCCGACTGGTATACGTTCGAGAAGATCGC GAAGCAGAGCCTCGCTTTATTGGCTCCAGCGGCGGTAATAGAGGTGGCTTCGGTAATAGCATGACGGGTTTCAAC CATGCTTATAGCGGTACAGCAACAAGCGCTGGAGGACGCCAGGTTTATGTTGCCAATTTGCCATATAACGTTGGA TGGCAAGATTTGAAAGATCTTTTTCGGCAAGCCACTCGGATGGGTAACGTTTTTCGCGCCGATGTGCACGTTGGA CACGACGGCCGACCTAAGGGTTCTGGTGTCGTCGTTTTTGAAAGCCCCGACGATGCTCGCAATGCTATTCAACAA TTCAATGGCTATGACTGGCAAGGCCGACTGCTTGACGTTCATGAAGATCGCTTTGCCTCTACTGGAGGTACAAGT TTCTCCGGTCGTGGTGGCTACGGCGGAGGAATGCGCGGTGGCTTCGGCAATAACTTCGGCCGTGGCGGCTTTGGT GGTGGCCACGCTGGATTTGGCTTTGGTGCACGTGGGGGCTTCAGTGGCGGCGGCAGCGGCAGCGGCAGCGGCAGT GGCAATGGCAACGGTGGCTCCAAGGGCCGCCGCTACTAG |
| Transcript | >OphauG2|3195 ATGGCCGACCCTGGCGACACTTACCGACCCCGCGAGAGGTCTCGATCGCCTCGTCGACGCTCTAGAAGTCCTGGC AGACAGTCTCGCCGCCGTTCTTATTCTCCACGCAGCAGATCAAACAGCCGAGACGACCAGCGACGTGGCCGTGAT CGTACACCCATGACGGCAGCAGGCACACCAGGTGGTGGATCTGTCGCTGGCTTTGGCGGCCAAGTCAGCAATCGG TCGTACGAGGATCGCGCCGCCACACGCGAGCAAAGAATGAACAGTCTTCGCGAGAATTCGCAACAGGATCGCCGC GTCTATGTCGGTAATCTTTCTTACGACGTAAAATGGCACCACCTTAAAGACTTTATGAGACAAGCTGGAGAAGTC ATATTTGCCGATGTATTGCTTCTACCCAATGGCATGTCCAAGGGATGCGGCATCGTCGAATACGCCACAAGAGAT CAGGCTCAACAAGCTGTAACTCAACTCAGCAACCAAAATCTCATGGGCCGACTGGTATACGTTCGAGAAGATCGC GAAGCAGAGCCTCGCTTTATTGGCTCCAGCGGCGGTAATAGAGGTGGCTTCGGTAATAGCATGACGGGTTTCAAC CATGCTTATAGCGGTACAGCAACAAGCGCTGGAGGACGCCAGGTTTATGTTGCCAATTTGCCATATAACGTTGGA TGGCAAGATTTGAAAGATCTTTTTCGGCAAGCCACTCGGATGGGTAACGTTTTTCGCGCCGATGTGCACGTTGGA CACGACGGCCGACCTAAGGGTTCTGGTGTCGTCGTTTTTGAAAGCCCCGACGATGCTCGCAATGCTATTCAACAA TTCAATGGCTATGACTGGCAAGGCCGACTGCTTGACGTTCATGAAGATCGCTTTGCCTCTACTGGAGGTACAAGT TTCTCCGGTCGTGGTGGCTACGGCGGAGGAATGCGCGGTGGCTTCGGCAATAACTTCGGCCGTGGCGGCTTTGGT GGTGGCCACGCTGGATTTGGCTTTGGTGCACGTGGGGGCTTCAGTGGCGGCGGCAGCGGCAGCGGCAGCGGCAGT GGCAATGGCAACGGTGGCTCCAAGGGCCGCCGCTACTAG |
| Gene | >OphauG2|3195 ATGGGTACGTTGGACCTGTCTCGTCGCATCTTGATGAATATGATATCAGCTGGTTACTGCAAGCCCCTCCATCGT CGACCAATGTTGGACAGGTTCAAGAGGCTTCATGTATCACGGCCGCCTCCAGCACAAGAATGTAACCCGTCACTG TCAGTCCTTGACCTGCATGTCTCCCACCCACATGTCCATCTCGGTGGCCCAGAGCCGTCCGGCTTTGCTGCCACC CCACCACCACCTCTGCCAGGACACGTCGACTCGACTTCTTTCTACCCGACCTGCGTCTGCCATGACTGTTGTCCT TATTACAAGCAGCTTTCCACTCCCCGCTCTCCCCCCCCTTTTTCTCTCGATCTGATCTTCTCTTCATACTTTCTT TTGGCTTGTTGCTTCTTCGCCAAGGTCAAAACTGACAGTTGCTCAATTTGTTTACAGCCGACCCTGGCGACACTT ACCGACCCGTGAGTCCCGTTTCCATATTTTCTTTTGTGCTGATATTGCTGGCGTGGATGGGCAGCTTTGCCAAGT TGATACTCAACGAAGCGCCGCTGCCCTCTAGCATTATGTTGCTGTCTCCACATCTCTCCACCTCGATTACATTCT CCTCTGCTTCGTCTCGCGCGCCCTCCTGAGTCTCTTGAGCCCCTTTTTCTTTTTATACCTGTCCTTTGCAGATTA CATTTCCTGCCTTGATTCAATACCATGTGCTGCGCTGCGCATCTTGCCAGCAAGGCTACTACTTCGGCTTGCTGC CGCGCTGCGCACAGTGGGGAAATCAAATTGAATAGTTTCTCCGCAACTTGGCTCCTGCGCGCCGCCCGCTCTTTT CATCCACCATTTGCCATCGACAAGTTTTCTCGTTTTGGCCATTGGCGCCCGATGCACCCCATCCTCGCGCCCTAG ATTTTACTTGCTGCCCTCGTTAACACGATATCCCGACTTCGCTGGCCCAGCTTGCAGCTAATATGTCTCAGCGCG AGAGGTCTCGATCGCCTCGTCGACGCTCTAGAAGTCCTGGCAGACAGTCTCGCCGCCGTTCTTATTCTCCACGCA GCAGATCAAACAGCCGAGACGACCAGCGACGTGGCCGTGATCGTACACCCATGACGGCAGCAGGCACACCAGGTG GTGGATCTGTCGCTGGCTTTGGCGGCCAAGTCAGCAATCGGTCGTACGAGGATCGCGCCGCCACACGCGAGCAAA GAATGAACAGTCTTCGCGAGAATTCGCAACAGGATCGCCGCGTCTATGTCGGTAATCTTTCTTACGACGTAAAAT GGCACCACCTTAAAGACTTTATGAGACAAGGTTGGCCTCCAAGTCAACTCCCTACCGTTGACGTCTCAATTACTT ACTTGGCTCCATCTGCTAGCTGGAGAAGTCATATTTGCCGATGTATTGCTTCTACCCAATGGCATGTCCAAGGTA CGCTTTACCATCACCTCTGTCCATTAATCCGTATCCTCTCCCTCGACAACTAACCTAGCTCTTTTGTCTGCATGT AGGGATGCGGGTAAGTCTCGTTATGGTTGATGCAACTCCACTTCGTTGACCAATTGCCCATGTGTTTATATCAGC ATCGTCGAATACGCCACAAGAGATCAGGCTCAACAAGCTGTAACTCAACTCAGCAACCAAAATCTCATGGGCCGA CTGGTATACGTTCGAGAAGTGTGTGGCCGCTTTTTTCTTTCCCCTCCAATTCATGCATCCAGCTGACTCTCAATT ACACCAGGATCGCGAAGCAGAGCCTCGCTTTATTGGCTCCAGCGGCGGTAATAGAGGTGGCTTCGGTAATAGCAT GACGGGTTTCAACCATGCTTATAGCGGTACAGCAACAAGCGCTGGAGGACGCCAGGTTTATGTTGCCAATGTAGG TGTACTCTCAGACTTATCGCCTTTTATTTTTTGGGGTGTAAGGGGTGTGGGGGGCATCTGACGCCGCTAATCTAT GTCTCTATTCAGTTGCCATATAACGTTGGATGGCAAGATTTGAAAGATCTTTTTCGGCAAGCCAGTATGTGACGC GCATTCCTTATAACTACGAAATTCATACTTACCATTAACAGCTCGGATGGGTAACGTTTTTCGCGCCGATGTGCA CGTTGGACACGACGGCCGACCTAAGGGTTCTGGTGTCGTCGTTTTTGAAAGCCCCGACGATGCTCGCAATGCTAT TCAACAATTCAATGGCTATGACTGGCAAGGCCGACTGCTTGACGTTCATGAAGATCGCTTTGCCTCTACTGGAGG TACAAGTTTCTCCGGTCGTGGTGGCTACGGCGGAGGAATGCGCGGTGGCTTCGGCAATAACTTCGGCCGTGGCGG CTTTGGTGGTGGCCACGCTGGATTTGGCTTTGGTGCACGTGGGGGCTTCAGTGGCGGCGGCAGCGGCAGCGGCAG CGGCAGTGGCAATGGCAACGGTGGCTCCAAGGGCCGCCGCTACTAG |