© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|3064 |
| Gene name | |
| Location | Contig_225:7900..8926 |
| Strand | - |
| Gene length (bp) | 1026 |
| Transcript length (bp) | 1026 |
| Coding sequence length (bp) | 1026 |
| Protein length (aa) | 342 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00348 | polyprenyl_synt | Polyprenyl synthetase | 2.1E-63 | 47 | 288 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q92236|GGPPS_GIBFU | Geranylgeranyl pyrophosphate synthase OS=Gibberella fujikuroi GN=GGS PE=3 SV=1 | 13 | 335 | 2.0E-174 |
| sp|P24322|GGPPS_NEUCR | Geranylgeranyl pyrophosphate synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=al-3 PE=2 SV=2 | 26 | 334 | 1.0E-153 |
| sp|B2DBE9|GGS4_PHOAM | Geranylgeranyl pyrophosphate synthase D OS=Phomopsis amygdali GN=GGS-D PE=1 SV=1 | 7 | 335 | 4.0E-120 |
| sp|Q9P885|GGPPS_MUCCL | Geranylgeranyl pyrophosphate synthase OS=Mucor circinelloides f. lusitanicus GN=carG PE=1 SV=1 | 34 | 298 | 4.0E-116 |
| sp|Q9WTN0|GGPPS_MOUSE | Geranylgeranyl pyrophosphate synthase OS=Mus musculus GN=Ggps1 PE=1 SV=1 | 46 | 335 | 6.0E-100 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q92236|GGPPS_GIBFU | Geranylgeranyl pyrophosphate synthase OS=Gibberella fujikuroi GN=GGS PE=3 SV=1 | 13 | 335 | 2.0E-174 |
| sp|P24322|GGPPS_NEUCR | Geranylgeranyl pyrophosphate synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=al-3 PE=2 SV=2 | 26 | 334 | 1.0E-153 |
| sp|B2DBE9|GGS4_PHOAM | Geranylgeranyl pyrophosphate synthase D OS=Phomopsis amygdali GN=GGS-D PE=1 SV=1 | 7 | 335 | 4.0E-120 |
| sp|Q9P885|GGPPS_MUCCL | Geranylgeranyl pyrophosphate synthase OS=Mucor circinelloides f. lusitanicus GN=carG PE=1 SV=1 | 34 | 298 | 4.0E-116 |
| sp|Q9WTN0|GGPPS_MOUSE | Geranylgeranyl pyrophosphate synthase OS=Mus musculus GN=Ggps1 PE=1 SV=1 | 46 | 335 | 6.0E-100 |
| sp|Q6F596|GGPPS_RAT | Geranylgeranyl pyrophosphate synthase OS=Rattus norvegicus GN=Ggps1 PE=2 SV=1 | 46 | 335 | 1.0E-99 |
| sp|P56966|GGPPS_BOVIN | Geranylgeranyl pyrophosphate synthase OS=Bos taurus GN=GGPS1 PE=1 SV=2 | 46 | 335 | 5.0E-99 |
| sp|O95749|GGPPS_HUMAN | Geranylgeranyl pyrophosphate synthase OS=Homo sapiens GN=GGPS1 PE=1 SV=1 | 46 | 335 | 2.0E-98 |
| sp|Q54BK1|GGPPS_DICDI | Geranylgeranyl pyrophosphate synthase OS=Dictyostelium discoideum GN=ggps1 PE=3 SV=1 | 52 | 307 | 2.0E-81 |
| sp|Q758K0|GGPPS_ASHGO | Geranylgeranyl pyrophosphate synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BTS1 PE=3 SV=1 | 41 | 306 | 6.0E-79 |
| sp|Q12051|GGPPS_YEAST | Geranylgeranyl pyrophosphate synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BTS1 PE=1 SV=1 | 38 | 309 | 1.0E-77 |
| sp|A1C8C3|OPHFS_ASPCL | Ophiobolin F synthase OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ACLA_076850 PE=1 SV=1 | 43 | 329 | 1.0E-59 |
| sp|B2DBE8|GGS1_PHOAM | Geranylgeranyl pyrophosphate synthase A OS=Phomopsis amygdali GN=GGS-A PE=1 SV=1 | 49 | 323 | 1.0E-54 |
| sp|A2PZA5|FUSS_PHOAM | Fusicoccadiene synthase OS=Phomopsis amygdali GN=PaFS PE=1 SV=1 | 44 | 304 | 2.0E-53 |
| sp|C9K2Q3|FUSS_ALTBR | Fusicoccadiene synthase OS=Alternaria brassicicola GN=bsc8 PE=1 SV=1 | 47 | 309 | 6.0E-45 |
| sp|O26156|IDSA_METTH | Short chain isoprenyl diphosphate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1 | 46 | 300 | 2.0E-18 |
| sp|Q9UWR6|GFPS_AERPX | Geranylfarnesyl diphosphate synthase OS=Aeropyrum pernix GN=fgs PE=1 SV=1 | 25 | 335 | 1.0E-16 |
| sp|Q53479|IDSA_METTM | Short chain isoprenyl diphosphate synthase OS=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) GN=idsA PE=1 SV=3 | 34 | 330 | 1.0E-15 |
| sp|Q58270|IDSA_METJA | Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=idsA PE=3 SV=1 | 77 | 309 | 1.0E-14 |
| sp|P44916|ISPB_HAEIN | Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1 | 55 | 259 | 2.0E-14 |
| sp|P0AD58|ISPB_SHIFL | Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3 SV=1 | 55 | 298 | 2.0E-14 |
| sp|P0AD57|ISPB_ECOLI | Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12) GN=ispB PE=1 SV=1 | 55 | 298 | 2.0E-14 |
| sp|P95999|GGPS_SULSO | Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds PE=3 SV=2 | 90 | 258 | 1.0E-13 |
| sp|P39464|GGPS_SULAC | Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=gds PE=1 SV=1 | 90 | 258 | 1.0E-12 |
| sp|O66129|HEXB_MICLU | Hexaprenyl-diphosphate synthase large subunit ((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus luteus GN=hexs-b PE=1 SV=1 | 61 | 292 | 4.0E-12 |
| sp|O43091|DPS1_SCHPO | Decaprenyl-diphosphate synthase subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dps1 PE=1 SV=1 | 77 | 313 | 2.0E-11 |
| sp|O24743|SDSA_RHOCA | All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1 | 13 | 315 | 3.0E-11 |
| sp|P31114|HEPS2_BACSU | Heptaprenyl diphosphate synthase component 2 OS=Bacillus subtilis (strain 168) GN=hepT PE=1 SV=1 | 83 | 281 | 3.0E-11 |
| sp|Q6CBH3|COQ1_YARLI | Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1 PE=3 SV=1 | 86 | 298 | 3.0E-11 |
| sp|P55785|HEPS2_GEOSE | Heptaprenyl diphosphate synthase component 2 OS=Geobacillus stearothermophilus GN=hepT PE=3 SV=1 | 61 | 258 | 7.0E-11 |
| sp|P31171|PREA_CYAPA | Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1 | 86 | 298 | 2.0E-10 |
| sp|Q5HZ00|SPS3_ARATH | Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1 | 51 | 314 | 1.0E-09 |
| sp|Q7S565|COQ1_NEUCR | Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1 | 86 | 308 | 7.0E-09 |
| sp|Q97W92|HEXPP_SULSO | Hexaprenyl pyrophosphate synthase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gdS-2 PE=1 SV=1 | 59 | 229 | 1.0E-08 |
| sp|Q8PW34|GGPP_METMA | Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=MM_1767 PE=3 SV=1 | 46 | 309 | 1.0E-08 |
| sp|Q08291|ISPA_GEOSE | Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus PE=1 SV=1 | 40 | 288 | 2.0E-08 |
| sp|Q8S948|SPS1_ARATH | Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1 PE=1 SV=1 | 86 | 268 | 4.0E-08 |
| sp|Q76FS5|SPS2_ARATH | Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=SPS2 PE=1 SV=1 | 88 | 268 | 5.0E-08 |
| sp|Q3IPL1|GFPS_NATPD | Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) GN=idsA3 PE=1 SV=1 | 68 | 305 | 5.0E-08 |
| sp|Q9LJY2|GGPPA_ARATH | Geranylgeranyl pyrophosphate synthase 10, mitochondrial OS=Arabidopsis thaliana GN=At3g20160 PE=1 SV=1 | 49 | 270 | 7.0E-08 |
| sp|Q653T6|SPS1_ORYSJ | Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=SPS1 PE=1 SV=1 | 51 | 279 | 4.0E-07 |
| sp|Q1XDL8|PREA_PYRYE | Prenyl transferase OS=Pyropia yezoensis GN=preA PE=3 SV=1 | 86 | 290 | 5.0E-07 |
| sp|Q0INZ4|SPS3_ORYSJ | Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment) OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1 | 61 | 269 | 7.0E-07 |
| sp|Q75HZ9|SPS2_ORYSJ | Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=SPS2 PE=1 SV=2 | 61 | 269 | 8.0E-07 |
| sp|Q5T2R2|DPS1_HUMAN | Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1 PE=1 SV=1 | 81 | 296 | 2.0E-06 |
| sp|Q33DR2|DPS1_MOUSE | Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1 PE=1 SV=1 | 81 | 296 | 3.0E-06 |
| sp|P72580|PREA_SYNY3 | Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=preA PE=3 SV=2 | 86 | 317 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008299 | isoprenoid biosynthetic process | Yes |
| GO:0006629 | lipid metabolic process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0006720 | isoprenoid metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0009987 | cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|3064 MAIAQEQSQEQSQDSHPPPAQTFNFDRYTHDDLNFTPDRSWNDYKERLVRAPYEYATRKPGKNFRSQLIAGFNGW LQVPPASLQIVTKVVGMLHESSLLIDDVQDSSELRRGFPVAHNIFGVAQTINSANYICYSALQEIQKLNCPKAIT VFADELVNLHRGQGMELHWRDTLTCPTEEDYLEMVGNKTAGLFRLGVKLMQAESPTDMDCVPLVNLIGLIYQIRD DYLNLWSHEYTHNKGMCEDLTEGKFSFPIIHSIRADPANLELINILKQKTTDVQVKRYAVSYMEGTGSFSYTRAV IATLIERARRTALEIDAGQGKADGVMKILDKMVIETPGSMF* |
| Coding | >OphauG2|3064 ATGGCTATCGCCCAGGAACAGTCCCAGGAACAGTCCCAAGACTCCCACCCGCCCCCGGCGCAGACGTTCAACTTT GATCGCTATACCCACGACGATCTCAACTTTACGCCTGACCGCTCGTGGAACGACTACAAGGAACGCCTTGTTCGC GCTCCCTATGAATATGCCACGCGCAAGCCTGGAAAGAACTTTCGCTCACAGCTCATTGCCGGCTTCAACGGCTGG CTGCAAGTCCCTCCCGCCAGCTTGCAGATTGTTACAAAAGTAGTTGGCATGTTGCACGAGTCGTCACTTCTCATT GACGACGTCCAAGACTCGTCTGAGCTGCGCCGCGGCTTTCCTGTTGCACACAACATCTTTGGTGTCGCACAGACT ATCAACTCGGCAAACTACATTTGCTACAGCGCCCTGCAGGAGATACAGAAGCTCAACTGCCCCAAAGCAATTACA GTCTTTGCCGATGAGCTTGTCAACTTGCACCGCGGCCAGGGCATGGAGCTGCACTGGCGCGACACTCTGACCTGT CCTACCGAGGAGGACTATTTGGAAATGGTGGGCAACAAGACTGCTGGCCTCTTTCGCCTCGGCGTCAAGCTCATG CAGGCCGAGTCGCCTACTGACATGGATTGCGTGCCCCTCGTCAATCTTATTGGTCTCATCTACCAAATTCGCGAT GATTACCTCAATCTGTGGTCTCACGAGTATACACACAATAAGGGCATGTGTGAGGATTTGACAGAGGGCAAATTC TCCTTTCCCATTATCCACAGCATCCGTGCCGACCCTGCAAACCTCGAGCTTATCAACATTCTCAAGCAAAAGACG ACTGACGTCCAAGTCAAGCGCTATGCTGTTTCGTACATGGAGGGGACTGGTAGCTTCAGTTACACGCGCGCCGTC ATCGCAACCCTGATTGAGCGTGCGCGCCGCACAGCCCTCGAAATCGACGCCGGTCAGGGCAAGGCTGACGGCGTC ATGAAAATTTTGGACAAGATGGTGATTGAGACTCCGGGCTCAATGTTTTGA |
| Transcript | >OphauG2|3064 ATGGCTATCGCCCAGGAACAGTCCCAGGAACAGTCCCAAGACTCCCACCCGCCCCCGGCGCAGACGTTCAACTTT GATCGCTATACCCACGACGATCTCAACTTTACGCCTGACCGCTCGTGGAACGACTACAAGGAACGCCTTGTTCGC GCTCCCTATGAATATGCCACGCGCAAGCCTGGAAAGAACTTTCGCTCACAGCTCATTGCCGGCTTCAACGGCTGG CTGCAAGTCCCTCCCGCCAGCTTGCAGATTGTTACAAAAGTAGTTGGCATGTTGCACGAGTCGTCACTTCTCATT GACGACGTCCAAGACTCGTCTGAGCTGCGCCGCGGCTTTCCTGTTGCACACAACATCTTTGGTGTCGCACAGACT ATCAACTCGGCAAACTACATTTGCTACAGCGCCCTGCAGGAGATACAGAAGCTCAACTGCCCCAAAGCAATTACA GTCTTTGCCGATGAGCTTGTCAACTTGCACCGCGGCCAGGGCATGGAGCTGCACTGGCGCGACACTCTGACCTGT CCTACCGAGGAGGACTATTTGGAAATGGTGGGCAACAAGACTGCTGGCCTCTTTCGCCTCGGCGTCAAGCTCATG CAGGCCGAGTCGCCTACTGACATGGATTGCGTGCCCCTCGTCAATCTTATTGGTCTCATCTACCAAATTCGCGAT GATTACCTCAATCTGTGGTCTCACGAGTATACACACAATAAGGGCATGTGTGAGGATTTGACAGAGGGCAAATTC TCCTTTCCCATTATCCACAGCATCCGTGCCGACCCTGCAAACCTCGAGCTTATCAACATTCTCAAGCAAAAGACG ACTGACGTCCAAGTCAAGCGCTATGCTGTTTCGTACATGGAGGGGACTGGTAGCTTCAGTTACACGCGCGCCGTC ATCGCAACCCTGATTGAGCGTGCGCGCCGCACAGCCCTCGAAATCGACGCCGGTCAGGGCAAGGCTGACGGCGTC ATGAAAATTTTGGACAAGATGGTGATTGAGACTCCGGGCTCAATGTTTTGA |
| Gene | >OphauG2|3064 ATGGCTATCGCCCAGGAACAGTCCCAGGAACAGTCCCAAGACTCCCACCCGCCCCCGGCGCAGACGTTCAACTTT GATCGCTATACCCACGACGATCTCAACTTTACGCCTGACCGCTCGTGGAACGACTACAAGGAACGCCTTGTTCGC GCTCCCTATGAATATGCCACGCGCAAGCCTGGAAAGAACTTTCGCTCACAGCTCATTGCCGGCTTCAACGGCTGG CTGCAAGTCCCTCCCGCCAGCTTGCAGATTGTTACAAAAGTAGTTGGCATGTTGCACGAGTCGTCACTTCTCATT GACGACGTCCAAGACTCGTCTGAGCTGCGCCGCGGCTTTCCTGTTGCACACAACATCTTTGGTGTCGCACAGACT ATCAACTCGGCAAACTACATTTGCTACAGCGCCCTGCAGGAGATACAGAAGCTCAACTGCCCCAAAGCAATTACA GTCTTTGCCGATGAGCTTGTCAACTTGCACCGCGGCCAGGGCATGGAGCTGCACTGGCGCGACACTCTGACCTGT CCTACCGAGGAGGACTATTTGGAAATGGTGGGCAACAAGACTGCTGGCCTCTTTCGCCTCGGCGTCAAGCTCATG CAGGCCGAGTCGCCTACTGACATGGATTGCGTGCCCCTCGTCAATCTTATTGGTCTCATCTACCAAATTCGCGAT GATTACCTCAATCTGTGGTCTCACGAGTATACACACAATAAGGGCATGTGTGAGGATTTGACAGAGGGCAAATTC TCCTTTCCCATTATCCACAGCATCCGTGCCGACCCTGCAAACCTCGAGCTTATCAACATTCTCAAGCAAAAGACG ACTGACGTCCAAGTCAAGCGCTATGCTGTTTCGTACATGGAGGGGACTGGTAGCTTCAGTTACACGCGCGCCGTC ATCGCAACCCTGATTGAGCGTGCGCGCCGCACAGCCCTCGAAATCGACGCCGGTCAGGGCAAGGCTGACGGCGTC ATGAAAATTTTGGACAAGATGGTGATTGAGACTCCGGGCTCAATGTTTTGA |