Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|305
Gene name
Location	Contig_1068:2164..4668
Strand	-
Gene length (bp)	2504
Transcript length (bp)	2034
Coding sequence length (bp)	2034
Protein length (aa)	678

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04818	CID	CID domain	7.4E-10	26	146
PF00076	RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4.4E-06	467	516

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9UTE3\|SEB1_SCHPO	Rpb7-binding protein seb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=seb1 PE=1 SV=3	7	627	5.0E-86
sp\|P53617\|NRD1_YEAST	Protein NRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRD1 PE=1 SV=1	448	614	2.0E-49
sp\|P53617\|NRD1_YEAST	Protein NRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRD1 PE=1 SV=1	1	166	4.0E-17
sp\|Q63623\|SCAF8_RAT	Protein SCAF8 OS=Rattus norvegicus GN=Scaf8 PE=1 SV=1	7	187	2.0E-06
sp\|Q6DID3\|SCAF8_MOUSE	Protein SCAF8 OS=Mus musculus GN=Scaf8 PE=1 SV=1	7	180	4.0E-06

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9UTE3\|SEB1_SCHPO	Rpb7-binding protein seb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=seb1 PE=1 SV=3	7	627	5.0E-86
sp\|P53617\|NRD1_YEAST	Protein NRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRD1 PE=1 SV=1	448	614	2.0E-49
sp\|P53617\|NRD1_YEAST	Protein NRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRD1 PE=1 SV=1	1	166	4.0E-17
sp\|Q63623\|SCAF8_RAT	Protein SCAF8 OS=Rattus norvegicus GN=Scaf8 PE=1 SV=1	7	187	2.0E-06
sp\|Q6DID3\|SCAF8_MOUSE	Protein SCAF8 OS=Mus musculus GN=Scaf8 PE=1 SV=1	7	180	4.0E-06
sp\|Q9UPN6\|SCAF8_HUMAN	Protein SCAF8 OS=Homo sapiens GN=SCAF8 PE=1 SV=1	7	180	4.0E-06

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GO

GO Term	Description	Terminal node
GO:0003723	RNA binding	Yes
GO:0003674	molecular_function	No
GO:1901363	heterocyclic compound binding	No
GO:0005488	binding	No
GO:0003676	nucleic acid binding	No
GO:0097159	organic cyclic compound binding	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|305 MASSNTVAELEAGLQSMLELKPPGVSKKGVDNLTKLCIANIQFESVLIQKVYTHFKKAPGTHKLGVLYVVDLVTR KWLERAKAQGQPVNSSAQDGTYAAGVNRVTELMPVLMNDVIQSAPDEQKDKIKKLLDIWEKAQTFPAPMLQASRE KLSTIENSNSTPPNASTTPPGSPPTGLPATSNNNAAGPAVLTAPNGASILEALANIARQTAAATPAGPAAAATPA PSAVPSYNAPAQVPSLIPQQQPQALPVPSFPPAATASSLPYPVPQQIPSQGGVQLPAIPGPNGQPPNAYAAAPAQ GLDSTTQQQIMLIKALAEQGVPFDKIPALVQSMTGTGQGASQHSFQPPIPAAQGSFPTGQQAWPGPVSGVDGPRD RGYLEHGQSPARFHGRSRSRSPDRGWGVRGSPRGGDDHDRNGRRGHDYRQRSPQGRRGRSDSPLEFPPIERWIDY DPALPAGHIRVLSRTLFVGGVTCTEADLRRIFSRYGIVQTCIVNKEKRHAFVKMLTRKDAVNAKDSTEDSRNLEL PLRTRWGVGFGPRDCSDYSSGISVIPIHKLTEADRKWLLTAPYGGSGGRPIETGMCVEEPDIEIGAGVSSKAISR RMQTDKGGSNGPKSTRNRDDDSGRGRRGRDFGGNQQRRNDQGDQGSATGYSFDLSGMSNGMPNFASGFAYPNSGN GN*
Coding	>OphauG2\|305 ATGGCGTCTTCCAACACAGTAGCAGAATTGGAGGCCGGTCTTCAGAGTATGCTTGAGCTCAAGCCTCCTGGAGTG TCCAAAAAGGGGGTAGACAACTTGACAAAGCTCTGTATCGCCAATATCCAGTTCGAATCGGTTCTTATACAAAAA GTCTACACGCATTTCAAAAAGGCACCCGGGACACACAAGTTGGGCGTTCTCTACGTAGTAGACCTTGTAACCCGC AAGTGGCTTGAACGAGCAAAGGCCCAAGGACAGCCAGTAAACAGCTCTGCGCAGGACGGCACGTATGCCGCCGGA GTCAACCGAGTGACAGAACTCATGCCCGTACTGATGAATGACGTTATTCAGTCTGCCCCCGACGAACAAAAGGAC AAGATCAAGAAGCTTCTCGACATATGGGAAAAGGCGCAAACCTTTCCTGCCCCAATGCTGCAAGCATCGAGGGAA AAGCTGAGCACCATCGAAAATTCCAATTCGACCCCGCCAAATGCCTCGACAACTCCTCCCGGCAGTCCACCAACA GGTCTACCCGCCACGTCCAACAACAATGCGGCCGGCCCAGCTGTTCTGACTGCTCCCAACGGTGCTTCAATTCTT GAGGCTCTTGCCAATATTGCTCGCCAAACCGCAGCAGCTACGCCCGCCGGTCCCGCTGCCGCTGCCACACCCGCG CCCTCGGCCGTGCCCTCATACAACGCCCCGGCTCAGGTGCCGTCTCTGATACCGCAGCAACAGCCTCAGGCCCTG CCGGTGCCGTCCTTTCCTCCAGCCGCCACTGCATCCTCTTTACCCTACCCTGTGCCCCAACAAATTCCAAGCCAG GGTGGTGTACAACTTCCCGCAATTCCCGGACCCAATGGCCAGCCGCCCAATGCCTACGCCGCGGCACCGGCTCAA GGACTTGACTCGACGACTCAGCAGCAGATAATGCTGATCAAGGCTCTTGCAGAGCAGGGCGTTCCATTTGATAAA ATTCCCGCGCTGGTACAGAGCATGACTGGTACTGGCCAGGGCGCCAGTCAGCACTCTTTCCAGCCTCCTATTCCC GCGGCCCAAGGCTCTTTTCCTACTGGACAACAGGCTTGGCCTGGCCCGGTCTCGGGAGTCGATGGCCCGAGGGAC CGAGGCTACCTTGAGCATGGTCAGTCTCCCGCCCGATTCCACGGGCGCTCTCGCTCTCGCTCGCCGGATCGTGGC TGGGGTGTTCGAGGTTCTCCTCGTGGCGGAGATGATCACGACCGCAACGGCCGCCGTGGCCACGACTATCGCCAA CGAAGTCCACAGGGAAGACGAGGACGCAGTGACTCACCGCTTGAGTTTCCTCCTATTGAGAGATGGATCGACTAC GATCCCGCCTTGCCTGCAGGCCATATCAGAGTCCTCAGTAGAACCCTTTTTGTAGGAGGAGTGACATGTACCGAA GCCGATTTGCGTCGCATATTCAGCCGCTACGGCATAGTGCAGACTTGCATTGTAAACAAAGAAAAACGGCACGCC TTTGTCAAAATGCTCACGCGCAAAGATGCCGTCAATGCCAAGGACAGTACCGAGGACAGCAGAAATCTCGAGCTT CCTCTGAGGACACGTTGGGGTGTTGGTTTTGGTCCCAGAGATTGTAGCGACTATTCTTCTGGCATTAGTGTGATT CCAATTCACAAACTTACCGAGGCTGATAGAAAATGGCTTTTAACAGCGCCTTATGGCGGCAGTGGAGGACGACCA ATAGAAACGGGCATGTGTGTCGAAGAGCCCGACATTGAGATTGGAGCTGGTGTGTCTTCCAAGGCGATCAGCCGG CGTATGCAAACAGACAAAGGCGGTAGCAACGGACCAAAGTCTACGCGTAACCGGGATGATGACAGCGGACGAGGA CGCCGGGGACGTGACTTTGGAGGCAATCAGCAACGTCGGAATGACCAAGGGGACCAAGGCTCTGCCACTGGATAT TCTTTTGACCTGAGCGGCATGTCGAATGGCATGCCCAACTTTGCTTCGGGCTTTGCATATCCAAACTCTGGAAAC GGCAACTAA
Transcript	>OphauG2\|305 ATGGCGTCTTCCAACACAGTAGCAGAATTGGAGGCCGGTCTTCAGAGTATGCTTGAGCTCAAGCCTCCTGGAGTG TCCAAAAAGGGGGTAGACAACTTGACAAAGCTCTGTATCGCCAATATCCAGTTCGAATCGGTTCTTATACAAAAA GTCTACACGCATTTCAAAAAGGCACCCGGGACACACAAGTTGGGCGTTCTCTACGTAGTAGACCTTGTAACCCGC AAGTGGCTTGAACGAGCAAAGGCCCAAGGACAGCCAGTAAACAGCTCTGCGCAGGACGGCACGTATGCCGCCGGA GTCAACCGAGTGACAGAACTCATGCCCGTACTGATGAATGACGTTATTCAGTCTGCCCCCGACGAACAAAAGGAC AAGATCAAGAAGCTTCTCGACATATGGGAAAAGGCGCAAACCTTTCCTGCCCCAATGCTGCAAGCATCGAGGGAA AAGCTGAGCACCATCGAAAATTCCAATTCGACCCCGCCAAATGCCTCGACAACTCCTCCCGGCAGTCCACCAACA GGTCTACCCGCCACGTCCAACAACAATGCGGCCGGCCCAGCTGTTCTGACTGCTCCCAACGGTGCTTCAATTCTT GAGGCTCTTGCCAATATTGCTCGCCAAACCGCAGCAGCTACGCCCGCCGGTCCCGCTGCCGCTGCCACACCCGCG CCCTCGGCCGTGCCCTCATACAACGCCCCGGCTCAGGTGCCGTCTCTGATACCGCAGCAACAGCCTCAGGCCCTG CCGGTGCCGTCCTTTCCTCCAGCCGCCACTGCATCCTCTTTACCCTACCCTGTGCCCCAACAAATTCCAAGCCAG GGTGGTGTACAACTTCCCGCAATTCCCGGACCCAATGGCCAGCCGCCCAATGCCTACGCCGCGGCACCGGCTCAA GGACTTGACTCGACGACTCAGCAGCAGATAATGCTGATCAAGGCTCTTGCAGAGCAGGGCGTTCCATTTGATAAA ATTCCCGCGCTGGTACAGAGCATGACTGGTACTGGCCAGGGCGCCAGTCAGCACTCTTTCCAGCCTCCTATTCCC GCGGCCCAAGGCTCTTTTCCTACTGGACAACAGGCTTGGCCTGGCCCGGTCTCGGGAGTCGATGGCCCGAGGGAC CGAGGCTACCTTGAGCATGGTCAGTCTCCCGCCCGATTCCACGGGCGCTCTCGCTCTCGCTCGCCGGATCGTGGC TGGGGTGTTCGAGGTTCTCCTCGTGGCGGAGATGATCACGACCGCAACGGCCGCCGTGGCCACGACTATCGCCAA CGAAGTCCACAGGGAAGACGAGGACGCAGTGACTCACCGCTTGAGTTTCCTCCTATTGAGAGATGGATCGACTAC GATCCCGCCTTGCCTGCAGGCCATATCAGAGTCCTCAGTAGAACCCTTTTTGTAGGAGGAGTGACATGTACCGAA GCCGATTTGCGTCGCATATTCAGCCGCTACGGCATAGTGCAGACTTGCATTGTAAACAAAGAAAAACGGCACGCC TTTGTCAAAATGCTCACGCGCAAAGATGCCGTCAATGCCAAGGACAGTACCGAGGACAGCAGAAATCTCGAGCTT CCTCTGAGGACACGTTGGGGTGTTGGTTTTGGTCCCAGAGATTGTAGCGACTATTCTTCTGGCATTAGTGTGATT CCAATTCACAAACTTACCGAGGCTGATAGAAAATGGCTTTTAACAGCGCCTTATGGCGGCAGTGGAGGACGACCA ATAGAAACGGGCATGTGTGTCGAAGAGCCCGACATTGAGATTGGAGCTGGTGTGTCTTCCAAGGCGATCAGCCGG CGTATGCAAACAGACAAAGGCGGTAGCAACGGACCAAAGTCTACGCGTAACCGGGATGATGACAGCGGACGAGGA CGCCGGGGACGTGACTTTGGAGGCAATCAGCAACGTCGGAATGACCAAGGGGACCAAGGCTCTGCCACTGGATAT TCTTTTGACCTGAGCGGCATGTCGAATGGCATGCCCAACTTTGCTTCGGGCTTTGCATATCCAAACTCTGGAAAC GGCAACTAA
Gene	>OphauG2\|305 ATGGCGTCTTCCAACACAGTAGCAGAATTGGAGGCCGGTCTTCAGAGTATGCTTGAGCTCAAGCCTCCTGGAGTG TCCAAAAAGGGGGTAGACAACTTGACAAAGCTCTGTATCGCCAATATCCAGGTATGGTGGTCCGGTCCGCCTCGG AAGCCAGGCGTCTGAGGGGCCTCTTACTGATGTTTGTTGCTTGCTAGTTCGAATCGGTTCTTATACAAAAAGTCT ACACGCATTTCAAAAAGGCACCCGGGACACACAAGTTGGGCGTTCTCTACGTAGTAGACCTTGTAACCCGCAAGT GGCTTGAACGAGCAAAGGCCCAAGGACAGCCAGTAAACAGCTCTGCGCAGGACGGCACGTATGCCGCCGGAGTCA ACCGAGTGACAGAACTCATGCCCGTACTGATGAATGACGTTATTCAGTCTGCCCCCGACGAACAAAAGGTACGCA CAACCTCTTTTTCTGCATGCGTAGGCCGTCTTGGACAGAAGAATTGGGACCAAAAGCGCCCTCAGTCAGCGTCAC AACCATGCCTGGTCTCGGCACTGCACGCCGCTGCACTCTGCACATGCACATGCGCGTGGCCATATCTTCATTTCC CACACCTGGCCAATAGATACAGTACGAACAGTAACTTACCAACATGTCTCTCCCTTGTAGGACAAGATCAAGAAG CTTCTCGACATATGGGAAAAGGCGCAAACCTTTCCTGCCCCAATGCTGCAAGCATCGAGGGAAAAGCTGAGCACC ATCGAAAATTCCAATTCGACCCCGCCAAGTATGTCTTGTCCGACTCGTAGTGCTCCAGTGCGCTGCCACTGACCA TATGCCTGTATCTAGATGCCTCGACAACTCCTCCCGGCAGTCCACCAACAGGTCTACCCGCCACGTCCAACAACA ATGCGGCCGGCCCAGCTGTTCTGACTGCTCCCAACGGTGCTTCAATTCTTGAGGCTCTTGCCAATATTGCTCGCC AAACCGCAGCAGCTACGCCCGCCGGTCCCGCTGCCGCTGCCACACCCGCGCCCTCGGCCGTGCCCTCATACAACG CCCCGGCTCAGGTGCCGTCTCTGATACCGCAGCAACAGCCTCAGGCCCTGCCGGTGCCGTCCTTTCCTCCAGCCG CCACTGCATCCTCTTTACCCTACCCTGTGCCCCAACAAATTCCAAGCCAGGGTGGTGTACAACTTCCCGCAATTC CCGGACCCAATGGCCAGCCGCCCAATGCCTACGCCGCGGCACCGGCTCAAGGACTTGACTCGACGACTCAGCAGC AGATAATGCTGATCAAGGCTCTTGCAGAGCAGGGCGTTCCATTTGATAAAATTCCCGCGCTGGTACAGAGCATGA CTGGTACTGGCCAGGGCGCCAGTCAGCACTCTTTCCAGCCTCCTATTCCCGCGGCCCAAGGCTCTTTTCCTACTG GACAACAGGCTTGGCCTGGCCCGGTCTCGGGAGTCGATGGCCCGAGGGACCGAGGCTACCTTGAGCATGGTCAGT CTCCCGCCCGATTCCACGGGCGCTCTCGCTCTCGCTCGCCGGATCGTGGCTGGGGTGTTCGAGGTTCTCCTCGTG GCGGAGATGATCACGACCGCAACGGCCGCCGTGGCCACGACTATCGCCAACGAAGTCCACAGGGAAGACGAGGAC GCAGTGACTCACCGCTTGAGTTTCCTCCTATTGAGAGATGGATCGACTACGATCCCGCCTTGCCTGCAGGCCATA TCAGAGTCCTCAGTAGAACCCTTTTTGTAGGAGGAGTGACGTAAGTCGGCGTCTTGACCGACATTGGCAAGCCAT TTTCATGTTGCTAACCATGGTTCAGATGTACCGAAGCCGATTTGCGTCGCATATTCAGCCGCTACGGCATAGTGC AGACTTGCATTGTAAACAAAGAAAAACGGCACGCCTTTGTCAAAATGCTCACGCGCAAAGATGCCGTCAATGCCA AGGACAGTACCGAGGACAGCAGAAATCTCGAGCTTCCTCTGAGGGTAAGCGCCCCGGCTACACACTACATTTCAT GAAGAAGACGGCTAACGAGGCCATGGCAGACACGTTGGGGTGTTGGTTTTGGTCCCAGAGATTGTAGCGACTATT CTTCTGGCATTAGTGTGATTCCAATTCACAAACTTACCGAGGCTGATAGAAAATGGCTTTTAACAGCGCCTTATG GCGGCAGTGGAGGACGACCAATAGAAACGGGCATGTGTGTCGAAGAGCCCGACATTGAGATTGGAGCTGGTGTGT CTTCCAAGGCGATCAGCCGGCGTATGCAAACAGACAAAGGCGGTAGCAACGGACCAAAGTCTACGCGTAACCGGG ATGATGACAGCGGACGAGGACGCCGGGGACGTGACTTTGGAGGCAATCAGCAACGTCGGAATGACCAAGGGGACC AAGGCTCTGCCACTGGATATTCTTTTGACCTGAGCGGCATGTCGAATGGCATGCCCAACTTTGCTTCGGGCTTTG CATATCCAAACTCTGGAAACGGCAACTAA

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