Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|305
Gene name
LocationContig_1068:2164..4668
Strand-
Gene length (bp)2504
Transcript length (bp)2034
Coding sequence length (bp)2034
Protein length (aa) 678

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04818 CID CID domain 7.4E-10 26 146
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.4E-06 467 516

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9UTE3|SEB1_SCHPO Rpb7-binding protein seb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=seb1 PE=1 SV=3 7 627 5.0E-86
sp|P53617|NRD1_YEAST Protein NRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRD1 PE=1 SV=1 448 614 2.0E-49
sp|P53617|NRD1_YEAST Protein NRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRD1 PE=1 SV=1 1 166 4.0E-17
sp|Q63623|SCAF8_RAT Protein SCAF8 OS=Rattus norvegicus GN=Scaf8 PE=1 SV=1 7 187 2.0E-06
sp|Q6DID3|SCAF8_MOUSE Protein SCAF8 OS=Mus musculus GN=Scaf8 PE=1 SV=1 7 180 4.0E-06
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9UTE3|SEB1_SCHPO Rpb7-binding protein seb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=seb1 PE=1 SV=3 7 627 5.0E-86
sp|P53617|NRD1_YEAST Protein NRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRD1 PE=1 SV=1 448 614 2.0E-49
sp|P53617|NRD1_YEAST Protein NRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRD1 PE=1 SV=1 1 166 4.0E-17
sp|Q63623|SCAF8_RAT Protein SCAF8 OS=Rattus norvegicus GN=Scaf8 PE=1 SV=1 7 187 2.0E-06
sp|Q6DID3|SCAF8_MOUSE Protein SCAF8 OS=Mus musculus GN=Scaf8 PE=1 SV=1 7 180 4.0E-06
sp|Q9UPN6|SCAF8_HUMAN Protein SCAF8 OS=Homo sapiens GN=SCAF8 PE=1 SV=1 7 180 4.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003674 molecular_function No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0003676 nucleic acid binding No
GO:0097159 organic cyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|305
MASSNTVAELEAGLQSMLELKPPGVSKKGVDNLTKLCIANIQFESVLIQKVYTHFKKAPGTHKLGVLYVVDLVTR
KWLERAKAQGQPVNSSAQDGTYAAGVNRVTELMPVLMNDVIQSAPDEQKDKIKKLLDIWEKAQTFPAPMLQASRE
KLSTIENSNSTPPNASTTPPGSPPTGLPATSNNNAAGPAVLTAPNGASILEALANIARQTAAATPAGPAAAATPA
PSAVPSYNAPAQVPSLIPQQQPQALPVPSFPPAATASSLPYPVPQQIPSQGGVQLPAIPGPNGQPPNAYAAAPAQ
GLDSTTQQQIMLIKALAEQGVPFDKIPALVQSMTGTGQGASQHSFQPPIPAAQGSFPTGQQAWPGPVSGVDGPRD
RGYLEHGQSPARFHGRSRSRSPDRGWGVRGSPRGGDDHDRNGRRGHDYRQRSPQGRRGRSDSPLEFPPIERWIDY
DPALPAGHIRVLSRTLFVGGVTCTEADLRRIFSRYGIVQTCIVNKEKRHAFVKMLTRKDAVNAKDSTEDSRNLEL
PLRTRWGVGFGPRDCSDYSSGISVIPIHKLTEADRKWLLTAPYGGSGGRPIETGMCVEEPDIEIGAGVSSKAISR
RMQTDKGGSNGPKSTRNRDDDSGRGRRGRDFGGNQQRRNDQGDQGSATGYSFDLSGMSNGMPNFASGFAYPNSGN
GN*
Coding >OphauG2|305
ATGGCGTCTTCCAACACAGTAGCAGAATTGGAGGCCGGTCTTCAGAGTATGCTTGAGCTCAAGCCTCCTGGAGTG
TCCAAAAAGGGGGTAGACAACTTGACAAAGCTCTGTATCGCCAATATCCAGTTCGAATCGGTTCTTATACAAAAA
GTCTACACGCATTTCAAAAAGGCACCCGGGACACACAAGTTGGGCGTTCTCTACGTAGTAGACCTTGTAACCCGC
AAGTGGCTTGAACGAGCAAAGGCCCAAGGACAGCCAGTAAACAGCTCTGCGCAGGACGGCACGTATGCCGCCGGA
GTCAACCGAGTGACAGAACTCATGCCCGTACTGATGAATGACGTTATTCAGTCTGCCCCCGACGAACAAAAGGAC
AAGATCAAGAAGCTTCTCGACATATGGGAAAAGGCGCAAACCTTTCCTGCCCCAATGCTGCAAGCATCGAGGGAA
AAGCTGAGCACCATCGAAAATTCCAATTCGACCCCGCCAAATGCCTCGACAACTCCTCCCGGCAGTCCACCAACA
GGTCTACCCGCCACGTCCAACAACAATGCGGCCGGCCCAGCTGTTCTGACTGCTCCCAACGGTGCTTCAATTCTT
GAGGCTCTTGCCAATATTGCTCGCCAAACCGCAGCAGCTACGCCCGCCGGTCCCGCTGCCGCTGCCACACCCGCG
CCCTCGGCCGTGCCCTCATACAACGCCCCGGCTCAGGTGCCGTCTCTGATACCGCAGCAACAGCCTCAGGCCCTG
CCGGTGCCGTCCTTTCCTCCAGCCGCCACTGCATCCTCTTTACCCTACCCTGTGCCCCAACAAATTCCAAGCCAG
GGTGGTGTACAACTTCCCGCAATTCCCGGACCCAATGGCCAGCCGCCCAATGCCTACGCCGCGGCACCGGCTCAA
GGACTTGACTCGACGACTCAGCAGCAGATAATGCTGATCAAGGCTCTTGCAGAGCAGGGCGTTCCATTTGATAAA
ATTCCCGCGCTGGTACAGAGCATGACTGGTACTGGCCAGGGCGCCAGTCAGCACTCTTTCCAGCCTCCTATTCCC
GCGGCCCAAGGCTCTTTTCCTACTGGACAACAGGCTTGGCCTGGCCCGGTCTCGGGAGTCGATGGCCCGAGGGAC
CGAGGCTACCTTGAGCATGGTCAGTCTCCCGCCCGATTCCACGGGCGCTCTCGCTCTCGCTCGCCGGATCGTGGC
TGGGGTGTTCGAGGTTCTCCTCGTGGCGGAGATGATCACGACCGCAACGGCCGCCGTGGCCACGACTATCGCCAA
CGAAGTCCACAGGGAAGACGAGGACGCAGTGACTCACCGCTTGAGTTTCCTCCTATTGAGAGATGGATCGACTAC
GATCCCGCCTTGCCTGCAGGCCATATCAGAGTCCTCAGTAGAACCCTTTTTGTAGGAGGAGTGACATGTACCGAA
GCCGATTTGCGTCGCATATTCAGCCGCTACGGCATAGTGCAGACTTGCATTGTAAACAAAGAAAAACGGCACGCC
TTTGTCAAAATGCTCACGCGCAAAGATGCCGTCAATGCCAAGGACAGTACCGAGGACAGCAGAAATCTCGAGCTT
CCTCTGAGGACACGTTGGGGTGTTGGTTTTGGTCCCAGAGATTGTAGCGACTATTCTTCTGGCATTAGTGTGATT
CCAATTCACAAACTTACCGAGGCTGATAGAAAATGGCTTTTAACAGCGCCTTATGGCGGCAGTGGAGGACGACCA
ATAGAAACGGGCATGTGTGTCGAAGAGCCCGACATTGAGATTGGAGCTGGTGTGTCTTCCAAGGCGATCAGCCGG
CGTATGCAAACAGACAAAGGCGGTAGCAACGGACCAAAGTCTACGCGTAACCGGGATGATGACAGCGGACGAGGA
CGCCGGGGACGTGACTTTGGAGGCAATCAGCAACGTCGGAATGACCAAGGGGACCAAGGCTCTGCCACTGGATAT
TCTTTTGACCTGAGCGGCATGTCGAATGGCATGCCCAACTTTGCTTCGGGCTTTGCATATCCAAACTCTGGAAAC
GGCAACTAA
Transcript >OphauG2|305
ATGGCGTCTTCCAACACAGTAGCAGAATTGGAGGCCGGTCTTCAGAGTATGCTTGAGCTCAAGCCTCCTGGAGTG
TCCAAAAAGGGGGTAGACAACTTGACAAAGCTCTGTATCGCCAATATCCAGTTCGAATCGGTTCTTATACAAAAA
GTCTACACGCATTTCAAAAAGGCACCCGGGACACACAAGTTGGGCGTTCTCTACGTAGTAGACCTTGTAACCCGC
AAGTGGCTTGAACGAGCAAAGGCCCAAGGACAGCCAGTAAACAGCTCTGCGCAGGACGGCACGTATGCCGCCGGA
GTCAACCGAGTGACAGAACTCATGCCCGTACTGATGAATGACGTTATTCAGTCTGCCCCCGACGAACAAAAGGAC
AAGATCAAGAAGCTTCTCGACATATGGGAAAAGGCGCAAACCTTTCCTGCCCCAATGCTGCAAGCATCGAGGGAA
AAGCTGAGCACCATCGAAAATTCCAATTCGACCCCGCCAAATGCCTCGACAACTCCTCCCGGCAGTCCACCAACA
GGTCTACCCGCCACGTCCAACAACAATGCGGCCGGCCCAGCTGTTCTGACTGCTCCCAACGGTGCTTCAATTCTT
GAGGCTCTTGCCAATATTGCTCGCCAAACCGCAGCAGCTACGCCCGCCGGTCCCGCTGCCGCTGCCACACCCGCG
CCCTCGGCCGTGCCCTCATACAACGCCCCGGCTCAGGTGCCGTCTCTGATACCGCAGCAACAGCCTCAGGCCCTG
CCGGTGCCGTCCTTTCCTCCAGCCGCCACTGCATCCTCTTTACCCTACCCTGTGCCCCAACAAATTCCAAGCCAG
GGTGGTGTACAACTTCCCGCAATTCCCGGACCCAATGGCCAGCCGCCCAATGCCTACGCCGCGGCACCGGCTCAA
GGACTTGACTCGACGACTCAGCAGCAGATAATGCTGATCAAGGCTCTTGCAGAGCAGGGCGTTCCATTTGATAAA
ATTCCCGCGCTGGTACAGAGCATGACTGGTACTGGCCAGGGCGCCAGTCAGCACTCTTTCCAGCCTCCTATTCCC
GCGGCCCAAGGCTCTTTTCCTACTGGACAACAGGCTTGGCCTGGCCCGGTCTCGGGAGTCGATGGCCCGAGGGAC
CGAGGCTACCTTGAGCATGGTCAGTCTCCCGCCCGATTCCACGGGCGCTCTCGCTCTCGCTCGCCGGATCGTGGC
TGGGGTGTTCGAGGTTCTCCTCGTGGCGGAGATGATCACGACCGCAACGGCCGCCGTGGCCACGACTATCGCCAA
CGAAGTCCACAGGGAAGACGAGGACGCAGTGACTCACCGCTTGAGTTTCCTCCTATTGAGAGATGGATCGACTAC
GATCCCGCCTTGCCTGCAGGCCATATCAGAGTCCTCAGTAGAACCCTTTTTGTAGGAGGAGTGACATGTACCGAA
GCCGATTTGCGTCGCATATTCAGCCGCTACGGCATAGTGCAGACTTGCATTGTAAACAAAGAAAAACGGCACGCC
TTTGTCAAAATGCTCACGCGCAAAGATGCCGTCAATGCCAAGGACAGTACCGAGGACAGCAGAAATCTCGAGCTT
CCTCTGAGGACACGTTGGGGTGTTGGTTTTGGTCCCAGAGATTGTAGCGACTATTCTTCTGGCATTAGTGTGATT
CCAATTCACAAACTTACCGAGGCTGATAGAAAATGGCTTTTAACAGCGCCTTATGGCGGCAGTGGAGGACGACCA
ATAGAAACGGGCATGTGTGTCGAAGAGCCCGACATTGAGATTGGAGCTGGTGTGTCTTCCAAGGCGATCAGCCGG
CGTATGCAAACAGACAAAGGCGGTAGCAACGGACCAAAGTCTACGCGTAACCGGGATGATGACAGCGGACGAGGA
CGCCGGGGACGTGACTTTGGAGGCAATCAGCAACGTCGGAATGACCAAGGGGACCAAGGCTCTGCCACTGGATAT
TCTTTTGACCTGAGCGGCATGTCGAATGGCATGCCCAACTTTGCTTCGGGCTTTGCATATCCAAACTCTGGAAAC
GGCAACTAA
Gene >OphauG2|305
ATGGCGTCTTCCAACACAGTAGCAGAATTGGAGGCCGGTCTTCAGAGTATGCTTGAGCTCAAGCCTCCTGGAGTG
TCCAAAAAGGGGGTAGACAACTTGACAAAGCTCTGTATCGCCAATATCCAGGTATGGTGGTCCGGTCCGCCTCGG
AAGCCAGGCGTCTGAGGGGCCTCTTACTGATGTTTGTTGCTTGCTAGTTCGAATCGGTTCTTATACAAAAAGTCT
ACACGCATTTCAAAAAGGCACCCGGGACACACAAGTTGGGCGTTCTCTACGTAGTAGACCTTGTAACCCGCAAGT
GGCTTGAACGAGCAAAGGCCCAAGGACAGCCAGTAAACAGCTCTGCGCAGGACGGCACGTATGCCGCCGGAGTCA
ACCGAGTGACAGAACTCATGCCCGTACTGATGAATGACGTTATTCAGTCTGCCCCCGACGAACAAAAGGTACGCA
CAACCTCTTTTTCTGCATGCGTAGGCCGTCTTGGACAGAAGAATTGGGACCAAAAGCGCCCTCAGTCAGCGTCAC
AACCATGCCTGGTCTCGGCACTGCACGCCGCTGCACTCTGCACATGCACATGCGCGTGGCCATATCTTCATTTCC
CACACCTGGCCAATAGATACAGTACGAACAGTAACTTACCAACATGTCTCTCCCTTGTAGGACAAGATCAAGAAG
CTTCTCGACATATGGGAAAAGGCGCAAACCTTTCCTGCCCCAATGCTGCAAGCATCGAGGGAAAAGCTGAGCACC
ATCGAAAATTCCAATTCGACCCCGCCAAGTATGTCTTGTCCGACTCGTAGTGCTCCAGTGCGCTGCCACTGACCA
TATGCCTGTATCTAGATGCCTCGACAACTCCTCCCGGCAGTCCACCAACAGGTCTACCCGCCACGTCCAACAACA
ATGCGGCCGGCCCAGCTGTTCTGACTGCTCCCAACGGTGCTTCAATTCTTGAGGCTCTTGCCAATATTGCTCGCC
AAACCGCAGCAGCTACGCCCGCCGGTCCCGCTGCCGCTGCCACACCCGCGCCCTCGGCCGTGCCCTCATACAACG
CCCCGGCTCAGGTGCCGTCTCTGATACCGCAGCAACAGCCTCAGGCCCTGCCGGTGCCGTCCTTTCCTCCAGCCG
CCACTGCATCCTCTTTACCCTACCCTGTGCCCCAACAAATTCCAAGCCAGGGTGGTGTACAACTTCCCGCAATTC
CCGGACCCAATGGCCAGCCGCCCAATGCCTACGCCGCGGCACCGGCTCAAGGACTTGACTCGACGACTCAGCAGC
AGATAATGCTGATCAAGGCTCTTGCAGAGCAGGGCGTTCCATTTGATAAAATTCCCGCGCTGGTACAGAGCATGA
CTGGTACTGGCCAGGGCGCCAGTCAGCACTCTTTCCAGCCTCCTATTCCCGCGGCCCAAGGCTCTTTTCCTACTG
GACAACAGGCTTGGCCTGGCCCGGTCTCGGGAGTCGATGGCCCGAGGGACCGAGGCTACCTTGAGCATGGTCAGT
CTCCCGCCCGATTCCACGGGCGCTCTCGCTCTCGCTCGCCGGATCGTGGCTGGGGTGTTCGAGGTTCTCCTCGTG
GCGGAGATGATCACGACCGCAACGGCCGCCGTGGCCACGACTATCGCCAACGAAGTCCACAGGGAAGACGAGGAC
GCAGTGACTCACCGCTTGAGTTTCCTCCTATTGAGAGATGGATCGACTACGATCCCGCCTTGCCTGCAGGCCATA
TCAGAGTCCTCAGTAGAACCCTTTTTGTAGGAGGAGTGACGTAAGTCGGCGTCTTGACCGACATTGGCAAGCCAT
TTTCATGTTGCTAACCATGGTTCAGATGTACCGAAGCCGATTTGCGTCGCATATTCAGCCGCTACGGCATAGTGC
AGACTTGCATTGTAAACAAAGAAAAACGGCACGCCTTTGTCAAAATGCTCACGCGCAAAGATGCCGTCAATGCCA
AGGACAGTACCGAGGACAGCAGAAATCTCGAGCTTCCTCTGAGGGTAAGCGCCCCGGCTACACACTACATTTCAT
GAAGAAGACGGCTAACGAGGCCATGGCAGACACGTTGGGGTGTTGGTTTTGGTCCCAGAGATTGTAGCGACTATT
CTTCTGGCATTAGTGTGATTCCAATTCACAAACTTACCGAGGCTGATAGAAAATGGCTTTTAACAGCGCCTTATG
GCGGCAGTGGAGGACGACCAATAGAAACGGGCATGTGTGTCGAAGAGCCCGACATTGAGATTGGAGCTGGTGTGT
CTTCCAAGGCGATCAGCCGGCGTATGCAAACAGACAAAGGCGGTAGCAACGGACCAAAGTCTACGCGTAACCGGG
ATGATGACAGCGGACGAGGACGCCGGGGACGTGACTTTGGAGGCAATCAGCAACGTCGGAATGACCAAGGGGACC
AAGGCTCTGCCACTGGATATTCTTTTGACCTGAGCGGCATGTCGAATGGCATGCCCAACTTTGCTTCGGGCTTTG
CATATCCAAACTCTGGAAACGGCAACTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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