© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|2933 |
| Gene name | |
| Location | Contig_215:5119..6214 |
| Strand | - |
| Gene length (bp) | 1095 |
| Transcript length (bp) | 1095 |
| Coding sequence length (bp) | 1095 |
| Protein length (aa) | 365 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04000 | Sas10_Utp3 | Sas10/Utp3/C1D family | 9.9E-17 | 14 | 96 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09713|YA36_SCHPO | Uncharacterized protein C18B11.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18B11.06 PE=1 SV=1 | 11 | 351 | 2.0E-28 |
| sp|P40079|LCP5_YEAST | U3 small nucleolar ribonucleoprotein protein LCP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LCP5 PE=1 SV=1 | 7 | 296 | 7.0E-17 |
| sp|Q2KII6|NGDN_BOVIN | Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1 | 1 | 116 | 3.0E-11 |
| sp|Q8NEJ9|NGDN_HUMAN | Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1 | 4 | 116 | 5.0E-10 |
| sp|Q9DB96|NGDN_MOUSE | Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1 | 35 | 116 | 4.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09713|YA36_SCHPO | Uncharacterized protein C18B11.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18B11.06 PE=1 SV=1 | 11 | 351 | 2.0E-28 |
| sp|P40079|LCP5_YEAST | U3 small nucleolar ribonucleoprotein protein LCP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LCP5 PE=1 SV=1 | 7 | 296 | 7.0E-17 |
| sp|Q2KII6|NGDN_BOVIN | Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1 | 1 | 116 | 3.0E-11 |
| sp|Q8NEJ9|NGDN_HUMAN | Neuroguidin OS=Homo sapiens GN=NGDN PE=1 SV=1 | 4 | 116 | 5.0E-10 |
| sp|Q9DB96|NGDN_MOUSE | Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1 | 35 | 116 | 4.0E-09 |
| sp|Q28IV8|NGDN_XENTR | Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=1 | 37 | 280 | 9.0E-09 |
| sp|Q4KLC4|NGDNA_XENLA | Neuroguidin-A OS=Xenopus laevis GN=ngdn-a PE=1 SV=1 | 37 | 116 | 5.0E-08 |
| sp|Q6PFJ1|NGDN_DANRE | Neuroguidin OS=Danio rerio GN=ngdn PE=2 SV=1 | 4 | 143 | 5.0E-08 |
| sp|Q5M985|NGDNB_XENLA | Neuroguidin-B (Fragment) OS=Xenopus laevis GN=ngdn-b PE=1 SV=1 | 37 | 116 | 6.0E-08 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.5 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|2933 MAAPTTLSALLTWLNQSLSLAQEATPKLEEYKHPQNGISLLDVKNDLLLSYLQNLVFLILLKLRNAKSDGNSTDA HQEIPQGVRLKLVELRVYLEKGVRPLEEKLKFSIDRFLRTAQDAQREQQKKSTKLKAEARSDDSDDSGSDRHRDG SASESNDAVIAAPRPGSLIDVVSIKPAEDQDAPPGIYRPPRRERKVMETTRPRGKAVSQPRRSHTMDEFISAELS TVPLAEPSIGTTIVQGGRRTKTSQERKIEQERREYEETNLVRLPKASKKERAKMKQQAGRSRRMQFGGEDWHELG EGVDRIDRLTKRKGPAEGNVRALLEKSRKRGMDTTDGPRGSGQGVEIGERFRKKVKTMKRSKMW* |
| Coding | >OphauG2|2933 ATGGCAGCGCCCACCACCTTGTCGGCTCTTCTGACTTGGTTGAACCAGTCATTGTCGCTTGCTCAGGAGGCGACG CCAAAACTAGAGGAATACAAGCACCCCCAAAATGGCATCTCGCTGCTCGACGTCAAGAACGACTTGCTGCTCTCC TACTTGCAAAATCTCGTTTTCCTTATCCTTCTCAAGCTGCGAAATGCAAAGTCTGATGGCAACTCAACCGACGCC CATCAAGAGATTCCCCAAGGTGTTCGCCTGAAGCTAGTCGAACTACGAGTCTATCTGGAAAAGGGTGTTCGGCCG TTGGAAGAAAAGCTCAAGTTCTCCATTGACCGCTTTCTCCGAACAGCTCAAGATGCACAACGCGAGCAGCAGAAA AAGAGCACAAAATTGAAAGCCGAGGCCAGGTCTGACGACTCTGACGACTCTGGGTCGGATCGGCATCGTGATGGA TCTGCATCTGAAAGCAATGATGCAGTAATTGCCGCACCTAGGCCTGGAAGCTTGATAGACGTCGTCTCCATCAAG CCGGCAGAAGACCAAGACGCGCCGCCTGGTATTTACCGCCCGCCGCGACGAGAACGCAAAGTTATGGAGACGACG CGGCCGCGCGGAAAAGCCGTTTCCCAACCTCGCCGCTCCCATACCATGGACGAATTTATCAGCGCAGAGCTCTCT ACCGTGCCGCTAGCGGAGCCCAGCATCGGCACAACCATTGTCCAGGGCGGGCGCAGGACGAAGACGTCGCAGGAG CGCAAGATTGAACAAGAACGCCGCGAGTACGAAGAAACAAACCTGGTGCGCTTGCCCAAGGCCAGCAAGAAGGAG CGCGCCAAGATGAAGCAGCAGGCGGGGCGCAGCCGGCGCATGCAGTTTGGCGGCGAGGACTGGCACGAGTTGGGC GAGGGCGTCGACCGCATCGACCGCCTTACCAAGCGCAAAGGTCCGGCCGAAGGCAATGTGCGCGCCCTGCTGGAA AAGAGCCGCAAACGTGGCATGGACACGACGGATGGGCCCCGAGGCAGCGGCCAGGGAGTCGAGATTGGAGAGAGA TTTCGCAAAAAAGTCAAGACTATGAAGAGGAGCAAAATGTGGTAG |
| Transcript | >OphauG2|2933 ATGGCAGCGCCCACCACCTTGTCGGCTCTTCTGACTTGGTTGAACCAGTCATTGTCGCTTGCTCAGGAGGCGACG CCAAAACTAGAGGAATACAAGCACCCCCAAAATGGCATCTCGCTGCTCGACGTCAAGAACGACTTGCTGCTCTCC TACTTGCAAAATCTCGTTTTCCTTATCCTTCTCAAGCTGCGAAATGCAAAGTCTGATGGCAACTCAACCGACGCC CATCAAGAGATTCCCCAAGGTGTTCGCCTGAAGCTAGTCGAACTACGAGTCTATCTGGAAAAGGGTGTTCGGCCG TTGGAAGAAAAGCTCAAGTTCTCCATTGACCGCTTTCTCCGAACAGCTCAAGATGCACAACGCGAGCAGCAGAAA AAGAGCACAAAATTGAAAGCCGAGGCCAGGTCTGACGACTCTGACGACTCTGGGTCGGATCGGCATCGTGATGGA TCTGCATCTGAAAGCAATGATGCAGTAATTGCCGCACCTAGGCCTGGAAGCTTGATAGACGTCGTCTCCATCAAG CCGGCAGAAGACCAAGACGCGCCGCCTGGTATTTACCGCCCGCCGCGACGAGAACGCAAAGTTATGGAGACGACG CGGCCGCGCGGAAAAGCCGTTTCCCAACCTCGCCGCTCCCATACCATGGACGAATTTATCAGCGCAGAGCTCTCT ACCGTGCCGCTAGCGGAGCCCAGCATCGGCACAACCATTGTCCAGGGCGGGCGCAGGACGAAGACGTCGCAGGAG CGCAAGATTGAACAAGAACGCCGCGAGTACGAAGAAACAAACCTGGTGCGCTTGCCCAAGGCCAGCAAGAAGGAG CGCGCCAAGATGAAGCAGCAGGCGGGGCGCAGCCGGCGCATGCAGTTTGGCGGCGAGGACTGGCACGAGTTGGGC GAGGGCGTCGACCGCATCGACCGCCTTACCAAGCGCAAAGGTCCGGCCGAAGGCAATGTGCGCGCCCTGCTGGAA AAGAGCCGCAAACGTGGCATGGACACGACGGATGGGCCCCGAGGCAGCGGCCAGGGAGTCGAGATTGGAGAGAGA TTTCGCAAAAAAGTCAAGACTATGAAGAGGAGCAAAATGTGGTAG |
| Gene | >OphauG2|2933 ATGGCAGCGCCCACCACCTTGTCGGCTCTTCTGACTTGGTTGAACCAGTCATTGTCGCTTGCTCAGGAGGCGACG CCAAAACTAGAGGAATACAAGCACCCCCAAAATGGCATCTCGCTGCTCGACGTCAAGAACGACTTGCTGCTCTCC TACTTGCAAAATCTCGTTTTCCTTATCCTTCTCAAGCTGCGAAATGCAAAGTCTGATGGCAACTCAACCGACGCC CATCAAGAGATTCCCCAAGGTGTTCGCCTGAAGCTAGTCGAACTACGAGTCTATCTGGAAAAGGGTGTTCGGCCG TTGGAAGAAAAGCTCAAGTTCTCCATTGACCGCTTTCTCCGAACAGCTCAAGATGCACAACGCGAGCAGCAGAAA AAGAGCACAAAATTGAAAGCCGAGGCCAGGTCTGACGACTCTGACGACTCTGGGTCGGATCGGCATCGTGATGGA TCTGCATCTGAAAGCAATGATGCAGTAATTGCCGCACCTAGGCCTGGAAGCTTGATAGACGTCGTCTCCATCAAG CCGGCAGAAGACCAAGACGCGCCGCCTGGTATTTACCGCCCGCCGCGACGAGAACGCAAAGTTATGGAGACGACG CGGCCGCGCGGAAAAGCCGTTTCCCAACCTCGCCGCTCCCATACCATGGACGAATTTATCAGCGCAGAGCTCTCT ACCGTGCCGCTAGCGGAGCCCAGCATCGGCACAACCATTGTCCAGGGCGGGCGCAGGACGAAGACGTCGCAGGAG CGCAAGATTGAACAAGAACGCCGCGAGTACGAAGAAACAAACCTGGTGCGCTTGCCCAAGGCCAGCAAGAAGGAG CGCGCCAAGATGAAGCAGCAGGCGGGGCGCAGCCGGCGCATGCAGTTTGGCGGCGAGGACTGGCACGAGTTGGGC GAGGGCGTCGACCGCATCGACCGCCTTACCAAGCGCAAAGGTCCGGCCGAAGGCAATGTGCGCGCCCTGCTGGAA AAGAGCCGCAAACGTGGCATGGACACGACGGATGGGCCCCGAGGCAGCGGCCAGGGAGTCGAGATTGGAGAGAGA TTTCGCAAAAAAGTCAAGACTATGAAGAGGAGCAAAATGTGGTAG |