© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|2901 |
| Gene name | |
| Location | Contig_2120:320..1160 |
| Strand | - |
| Gene length (bp) | 840 |
| Transcript length (bp) | 453 |
| Coding sequence length (bp) | 453 |
| Protein length (aa) | 151 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01694 | Rhomboid | Rhomboid family | 3.2E-08 | 58 | 134 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4I4A4|RBD2_GIBZE | Rhomboid protein 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RBD2 PE=3 SV=1 | 2 | 134 | 1.0E-41 |
| sp|Q874X5|RBD2_PODAS | Rhomboid protein 2 OS=Podospora anserina GN=RBD2 PE=3 SV=1 | 2 | 134 | 3.0E-39 |
| sp|Q7S4V5|RBD2_NEUCR | Rhomboid protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rbd-2 PE=3 SV=1 | 7 | 134 | 7.0E-36 |
| sp|Q4WLP9|RBD2_ASPFU | Rhomboid protein 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rbd2 PE=3 SV=1 | 8 | 134 | 1.0E-33 |
| sp|Q9P375|YLM6_SCHPO | Uncharacterized rhomboid protein C19B12.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC19B12.06c PE=3 SV=2 | 14 | 116 | 4.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| GO:0004175 | endopeptidase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0008236 | serine-type peptidase activity | No |
| GO:0017171 | serine hydrolase activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008233 | peptidase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 40 | 19 |
| 2 | 60 | 82 | 22 |
| 3 | 95 | 117 | 22 |
| 4 | 127 | 149 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|2901 MPGIRDLNAPNIWIFIQRLPLVTRIVILLIALCWMVGLFWERLSDWGSLVPSKVFLTSAYRLSTFPLIHKNLIHA VVNVLALTPLMERFENEYGSLSTLALFFGPLTSLPALLYVLLEGIILRGNKPVMGASIWDTFVACLSATFAVWAI * |
| Coding | >OphauG2|2901 ATGCCTGGCATTCGGGACCTCAATGCTCCCAATATCTGGATTTTTATTCAGCGGCTACCACTCGTCACTCGAATC GTAATTCTGCTGATTGCTCTCTGCTGGATGGTAGGCCTTTTCTGGGAAAGATTGAGCGACTGGGGATCTTTGGTT CCTAGCAAAGTGTTCTTAACCTCAGCATATCGATTATCAACATTTCCTCTGATCCATAAAAACCTGATTCACGCT GTGGTTAACGTGCTTGCCTTGACACCCTTAATGGAACGATTTGAGAACGAATACGGGTCATTATCTACACTCGCT TTATTCTTTGGACCTTTGACATCGCTTCCAGCTCTCTTATATGTCTTACTAGAAGGAATAATTTTGCGTGGGAAT AAGCCAGTCATGGGAGCAAGCATCTGGGACACCTTTGTGGCGTGTTTATCGGCTACTTTTGCGGTATGGGCTATC TAA |
| Transcript | >OphauG2|2901 ATGCCTGGCATTCGGGACCTCAATGCTCCCAATATCTGGATTTTTATTCAGCGGCTACCACTCGTCACTCGAATC GTAATTCTGCTGATTGCTCTCTGCTGGATGGTAGGCCTTTTCTGGGAAAGATTGAGCGACTGGGGATCTTTGGTT CCTAGCAAAGTGTTCTTAACCTCAGCATATCGATTATCAACATTTCCTCTGATCCATAAAAACCTGATTCACGCT GTGGTTAACGTGCTTGCCTTGACACCCTTAATGGAACGATTTGAGAACGAATACGGGTCATTATCTACACTCGCT TTATTCTTTGGACCTTTGACATCGCTTCCAGCTCTCTTATATGTCTTACTAGAAGGAATAATTTTGCGTGGGAAT AAGCCAGTCATGGGAGCAAGCATCTGGGACACCTTTGTGGCGTGTTTATCGGCTACTTTTGCGGTATGGGCTATC TAA |
| Gene | >OphauG2|2901 ATGCCTGGCATTCGGGACCTCAATGCTCCCAATATCTGGATTTTTATTCAGCGGCTACCACTCGTCACTCGAATC GTAATTCTGCTGATTGCTCTCTGCTGGATGGTAGGCCTTTTCTGGGAAAGATTGAGCGACTGGGGATCTTTGGTT CCTAGCAAAGTGTTCTTAACCTCAGGTTGGTTTTTTTCCAGGCGCTTTGCTTCGAGCATGTCCTAACTAGACTGG CTTTAGCATATCGATTATCAACATTTCCTCTGATCCATAAAAACCTGATTCACGCTGTGGTTAACGTGCTTGCCT TGACACCCTTAATGGAACGATTTGAGAACGAATACGGGTCATTATCTACACTCGCTTTATTCTTTGGACGTACGA AAGCATACTTTCCCTGACTACTAAGATTTCTTCCCAGCTAATATTATCTGGCACCAGCTTTGACATCGCTTCCAG CTCTCTTATATGTCTTACTAGAAGGAATAATTTTGCGTGGGAATAAGCCAGTCATGGGAGCAAGGTAAGACTAAT ATTTCTAAATAATTAAGTCTACCTAACCATTTATTTCTAGCATCTGGGTATTTCTATTGCTAGGAATGGAAGCAA TACGTACATTTAGGTCAAATCCTTACTTGATTATTGGCACCTACCATATACCAACCTGGACTACACCACTTATTA TAGTAATCGCTGTGGCCGCTCTAGTGCCGAATACAAGTCTTCTAGGACACCTTTGTGGCGTGTTTATCGGCTACT TTTGTAAGTTTATTAGCCTCGCTATTCTAAATATCTTTCAACGTGGAGCTAGTATACTAATTGCGGTAAAAGGCG GTATGGGCTATCTAA |