© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|288 |
| Gene name | |
| Location | Contig_1060:670..1482 |
| Strand | + |
| Gene length (bp) | 812 |
| Transcript length (bp) | 747 |
| Coding sequence length (bp) | 747 |
| Protein length (aa) | 249 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03798 | TRAM_LAG1_CLN8 | TLC domain | 8.1E-46 | 1 | 204 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13752|YF22_SCHPO | Uncharacterized TLC domain-containing protein C17A2.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A2.02c PE=3 SV=1 | 26 | 222 | 1.0E-35 |
| sp|P47153|TDA4_YEAST | Topoisomerase I damage affected protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TDA4 PE=1 SV=1 | 45 | 208 | 7.0E-20 |
| sp|Q06107|YP114_YEAST | Uncharacterized TLC domain-containing protein YPR114W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPR114W PE=1 SV=1 | 29 | 208 | 9.0E-12 |
| sp|Q6GLX2|TM56A_XENLA | Transmembrane protein 56-A OS=Xenopus laevis GN=tmem56-a PE=2 SV=1 | 6 | 208 | 5.0E-06 |
| sp|Q6P4N1|TMM56_XENTR | Transmembrane protein 56 OS=Xenopus tropicalis GN=tmem56 PE=2 SV=1 | 6 | 208 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 30 | 52 | 22 |
| 2 | 59 | 81 | 22 |
| 3 | 85 | 107 | 22 |
| 4 | 120 | 138 | 18 |
| 5 | 178 | 200 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|288 MFQSLLINGLAIWVIIADDERRHMDWEQRIWGYTGAAGMIQALAGGYFVWDFVVTLRNFDVFGFGTLAHAVAAMI VYLLGFRPLVNYYSAVFILWELSTPFLNIHWFMDKIGMTGSNAQLYNGIALLFTFFSCRLVYGTYQSVRVFRDIW PAVNSHPSPGLRGSPIMAFASEKSTVPLWLAVIYLVSNLTLNSLNFYWFVMMIRAVRKRFDSSTGQIHKEPLTEI GVDLSSVASGTFRAPHKAQRRKE* |
| Coding | >OphauG2|288 ATGTTTCAGAGTCTTCTAATCAATGGTCTTGCTATTTGGGTCATCATTGCCGACGACGAGCGCCGCCATATGGAC TGGGAGCAGCGCATTTGGGGATACACAGGTGCTGCGGGCATGATCCAGGCTCTTGCTGGCGGCTATTTTGTCTGG GACTTTGTCGTCACGCTACGAAACTTCGATGTCTTTGGCTTTGGAACCCTGGCCCATGCGGTTGCCGCTATGATT GTCTACCTCCTTGGCTTTCGTCCTCTGGTGAACTATTACAGCGCTGTTTTTATTCTCTGGGAACTCTCGACACCA TTCCTCAATATTCACTGGTTTATGGATAAGATTGGCATGACGGGTTCCAATGCCCAGCTTTATAACGGAATTGCT CTCCTTTTTACTTTCTTCTCGTGTCGCCTAGTCTACGGTACATATCAGTCAGTACGTGTTTTTCGCGACATATGG CCCGCTGTCAATAGCCATCCTAGTCCAGGTCTTCGCGGATCACCCATCATGGCTTTTGCCTCAGAGAAATCCACT GTTCCGCTATGGCTCGCTGTTATCTATCTAGTCAGCAATTTGACGCTCAATAGCCTCAACTTTTACTGGTTTGTT ATGATGATACGTGCTGTCCGCAAGCGCTTCGACTCTAGCACCGGACAGATCCATAAGGAGCCATTGACCGAGATT GGAGTCGACCTCTCCTCTGTTGCTTCGGGAACATTTCGGGCCCCACACAAAGCGCAGCGACGCAAGGAATGA |
| Transcript | >OphauG2|288 ATGTTTCAGAGTCTTCTAATCAATGGTCTTGCTATTTGGGTCATCATTGCCGACGACGAGCGCCGCCATATGGAC TGGGAGCAGCGCATTTGGGGATACACAGGTGCTGCGGGCATGATCCAGGCTCTTGCTGGCGGCTATTTTGTCTGG GACTTTGTCGTCACGCTACGAAACTTCGATGTCTTTGGCTTTGGAACCCTGGCCCATGCGGTTGCCGCTATGATT GTCTACCTCCTTGGCTTTCGTCCTCTGGTGAACTATTACAGCGCTGTTTTTATTCTCTGGGAACTCTCGACACCA TTCCTCAATATTCACTGGTTTATGGATAAGATTGGCATGACGGGTTCCAATGCCCAGCTTTATAACGGAATTGCT CTCCTTTTTACTTTCTTCTCGTGTCGCCTAGTCTACGGTACATATCAGTCAGTACGTGTTTTTCGCGACATATGG CCCGCTGTCAATAGCCATCCTAGTCCAGGTCTTCGCGGATCACCCATCATGGCTTTTGCCTCAGAGAAATCCACT GTTCCGCTATGGCTCGCTGTTATCTATCTAGTCAGCAATTTGACGCTCAATAGCCTCAACTTTTACTGGTTTGTT ATGATGATACGTGCTGTCCGCAAGCGCTTCGACTCTAGCACCGGACAGATCCATAAGGAGCCATTGACCGAGATT GGAGTCGACCTCTCCTCTGTTGCTTCGGGAACATTTCGGGCCCCACACAAAGCGCAGCGACGCAAGGAATGA |
| Gene | >OphauG2|288 ATGTTTCAGAGTCTTCTAATCAATGGTCTTGCTATTTGGGTCATCATTGCCGACGACGAGCGCCGCCATATGGAC TGGGAGCAGCGCATTTGGGGATACACAGGTGCTGCGGGCATGATCCAGGCTCTTGCTGGCGGCTATTTTGTCTGG GACTTTGTCGTCACGCTACGAAACTTCGATGTCTTTGGCTTTGGAACCCTGGCCCATGCGGTTGCCGCTATGATT GTCTACCTCCTTGGCTTTGTAGGTGCTAGACAACCCTTCTCTCACCATCACCGCTCCACGACCCCGGCTAACTGG CTCAATAGCGTCCTCTGGTGAACTATTACAGCGCTGTTTTTATTCTCTGGGAACTCTCGACACCATTCCTCAATA TTCACTGGTTTATGGATAAGATTGGCATGACGGGTTCCAATGCCCAGCTTTATAACGGAATTGCTCTCCTTTTTA CTTTCTTCTCGTGTCGCCTAGTCTACGGTACATATCAGTCAGTACGTGTTTTTCGCGACATATGGCCCGCTGTCA ATAGCCATCCTAGTCCAGGTCTTCGCGGATCACCCATCATGGCTTTTGCCTCAGAGAAATCCACTGTTCCGCTAT GGCTCGCTGTTATCTATCTAGTCAGCAATTTGACGCTCAATAGCCTCAACTTTTACTGGTTTGTTATGATGATAC GTGCTGTCCGCAAGCGCTTCGACTCTAGCACCGGACAGATCCATAAGGAGCCATTGACCGAGATTGGAGTCGACC TCTCCTCTGTTGCTTCGGGAACATTTCGGGCCCCACACAAAGCGCAGCGACGCAAGGAATGA |