© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|2856 |
| Gene name | |
| Location | Contig_21:50485..51156 |
| Strand | - |
| Gene length (bp) | 671 |
| Transcript length (bp) | 621 |
| Coding sequence length (bp) | 621 |
| Protein length (aa) | 207 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04410 | Gar1 | Gar1/Naf1 RNA binding region | 5.4E-25 | 29 | 115 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q06975|GAR1_SCHPO | H/ACA ribonucleoprotein complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gar1 PE=2 SV=1 | 20 | 135 | 2.0E-52 |
| sp|Q1E6M1|GAR1_COCIM | H/ACA ribonucleoprotein complex subunit 1 OS=Coccidioides immitis (strain RS) GN=GAR1 PE=3 SV=1 | 11 | 112 | 3.0E-49 |
| sp|Q6CJ45|GAR1_KLULA | H/ACA ribonucleoprotein complex subunit 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=GAR1 PE=3 SV=1 | 9 | 128 | 5.0E-48 |
| sp|P28007|GAR1_YEAST | H/ACA ribonucleoprotein complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAR1 PE=1 SV=1 | 24 | 145 | 1.0E-47 |
| sp|A3GHP2|GAR1_PICST | H/ACA ribonucleoprotein complex subunit 1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=GAR1 PE=3 SV=1 | 24 | 122 | 4.0E-47 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q06975|GAR1_SCHPO | H/ACA ribonucleoprotein complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gar1 PE=2 SV=1 | 20 | 135 | 2.0E-52 |
| sp|Q1E6M1|GAR1_COCIM | H/ACA ribonucleoprotein complex subunit 1 OS=Coccidioides immitis (strain RS) GN=GAR1 PE=3 SV=1 | 11 | 112 | 3.0E-49 |
| sp|Q6CJ45|GAR1_KLULA | H/ACA ribonucleoprotein complex subunit 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=GAR1 PE=3 SV=1 | 9 | 128 | 5.0E-48 |
| sp|P28007|GAR1_YEAST | H/ACA ribonucleoprotein complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAR1 PE=1 SV=1 | 24 | 145 | 1.0E-47 |
| sp|A3GHP2|GAR1_PICST | H/ACA ribonucleoprotein complex subunit 1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=GAR1 PE=3 SV=1 | 24 | 122 | 4.0E-47 |
| sp|Q6BVF9|GAR1_DEBHA | H/ACA ribonucleoprotein complex subunit 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GAR1 PE=3 SV=1 | 24 | 128 | 6.0E-47 |
| sp|Q2HH48|GAR1_CHAGB | H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=GAR1 PE=3 SV=1 | 24 | 129 | 8.0E-47 |
| sp|A6SDR8|GAR1_BOTFB | H/ACA ribonucleoprotein complex subunit 1 OS=Botryotinia fuckeliana (strain B05.10) GN=GAR1 PE=3 SV=1 | 24 | 115 | 8.0E-47 |
| sp|A1CVY3|GAR1_NEOFI | H/ACA ribonucleoprotein complex subunit 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=gar1 PE=3 SV=1 | 14 | 112 | 4.0E-46 |
| sp|Q6FSB0|GAR1_CANGA | H/ACA ribonucleoprotein complex subunit 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GAR1 PE=3 SV=1 | 24 | 122 | 2.0E-45 |
| sp|Q4P5P0|GAR1_USTMA | H/ACA ribonucleoprotein complex subunit 1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=GAR1 PE=3 SV=1 | 20 | 128 | 4.0E-45 |
| sp|P0CN78|GAR1_CRYNJ | H/ACA ribonucleoprotein complex subunit 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=GAR1 PE=3 SV=1 | 23 | 122 | 5.0E-43 |
| sp|P0CN79|GAR1_CRYNB | H/ACA ribonucleoprotein complex subunit 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=GAR1 PE=3 SV=1 | 23 | 122 | 5.0E-43 |
| sp|Q757V8|GAR1_ASHGO | H/ACA ribonucleoprotein complex subunit 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=GAR1 PE=3 SV=1 | 25 | 128 | 2.0E-42 |
| sp|Q9FK53|NLAL2_ARATH | H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana GN=At5g18180 PE=2 SV=1 | 24 | 119 | 5.0E-38 |
| sp|Q8VZT0|NLAL1_ARATH | Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1 | 24 | 119 | 2.0E-35 |
| sp|Q5RJV1|GAR1_XENTR | H/ACA ribonucleoprotein complex subunit 1 OS=Xenopus tropicalis GN=gar1 PE=2 SV=1 | 24 | 118 | 5.0E-28 |
| sp|Q9CY66|GAR1_MOUSE | H/ACA ribonucleoprotein complex subunit 1 OS=Mus musculus GN=Gar1 PE=1 SV=1 | 18 | 118 | 1.0E-27 |
| sp|Q9NY12|GAR1_HUMAN | H/ACA ribonucleoprotein complex subunit 1 OS=Homo sapiens GN=GAR1 PE=1 SV=1 | 24 | 118 | 1.0E-27 |
| sp|Q7ZVE0|GAR1_DANRE | H/ACA ribonucleoprotein complex subunit 1 OS=Danio rerio GN=gar1 PE=2 SV=1 | 24 | 118 | 5.0E-27 |
| sp|Q6AYA1|GAR1_RAT | H/ACA ribonucleoprotein complex subunit 1 OS=Rattus norvegicus GN=Gar1 PE=2 SV=1 | 20 | 118 | 3.0E-24 |
| sp|Q61B10|GAR1_CAEBR | Probable H/ACA ribonucleoprotein complex subunit 1-like protein OS=Caenorhabditis briggsae GN=CBG13541 PE=3 SV=1 | 24 | 117 | 3.0E-24 |
| sp|Q9TYK1|GAR1_CAEEL | Probable H/ACA ribonucleoprotein complex subunit 1-like protein OS=Caenorhabditis elegans GN=Y66H1A.4 PE=3 SV=2 | 24 | 117 | 1.0E-21 |
| sp|Q7KVQ0|GAR1_DROME | Probable H/ACA ribonucleoprotein complex subunit 1 OS=Drosophila melanogaster GN=CG4038 PE=2 SV=1 | 23 | 118 | 9.0E-21 |
| sp|Q54XE6|GAR1_DICDI | Probable H/ACA ribonucleoprotein complex subunit 1 OS=Dictyostelium discoideum GN=gar1 PE=3 SV=1 | 28 | 119 | 7.0E-20 |
| sp|O96722|GAR1_ENCCU | H/ACA ribonucleoprotein complex subunit 1 OS=Encephalitozoon cuniculi (strain GB-M1) GN=GAR1 PE=3 SV=2 | 27 | 180 | 9.0E-14 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0042254 | ribosome biogenesis | Yes |
| GO:0001522 | pseudouridine synthesis | Yes |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0009451 | RNA modification | No |
| GO:0009987 | cellular process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0022613 | ribonucleoprotein complex biogenesis | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0044085 | cellular component biogenesis | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|2856 MSLRGRGGGRGGFRGGRGGFAPAGPPAEVLEMGLFKHAVEGEILCQSSNVKVPFFNAPIYLENKTPIGKVDEILG PINEVYFTIKPQEGIVASSFKEGDKFYIGGDKLLPLEKFLPKPKVLGEAKVKKPGGARGGRGGGRGGRGGRGGRG GGRGAPGGFSGGFSRGGSRGGGGFSRGGGRGAGGFSRGGGGGRGGFGGGYRGRGRG* |
| Coding | >OphauG2|2856 ATGTCGCTTAGAGGCCGTGGCGGCGGCCGCGGCGGCTTTCGAGGTGGACGAGGCGGCTTTGCACCCGCGGGACCC CCTGCCGAAGTGTTGGAAATGGGCTTGTTCAAGCACGCCGTCGAAGGCGAGATACTCTGCCAGTCGTCCAACGTC AAAGTTCCCTTTTTCAATGCGCCCATATACCTCGAGAACAAGACTCCTATTGGCAAGGTTGACGAGATTCTCGGC CCCATCAACGAGGTATACTTTACCATTAAGCCACAAGAAGGCATCGTTGCCTCAAGCTTTAAGGAGGGCGACAAG TTCTATATTGGAGGCGACAAGCTACTGCCCCTGGAAAAGTTTCTGCCCAAGCCAAAGGTCCTGGGGGAAGCAAAG GTCAAGAAACCTGGCGGAGCGCGCGGTGGACGTGGGGGTGGCAGGGGAGGGAGAGGAGGAAGAGGAGGCCGCGGT GGTGGACGAGGAGCACCGGGTGGCTTCTCGGGTGGCTTCTCGAGGGGCGGTTCCCGGGGCGGGGGCGGCTTCTCA CGAGGGGGCGGCCGCGGCGCAGGGGGTTTTTCCAGAGGAGGGGGAGGCGGTCGGGGTGGCTTTGGTGGCGGCTAC AGAGGACGGGGGAGAGGATAG |
| Transcript | >OphauG2|2856 ATGTCGCTTAGAGGCCGTGGCGGCGGCCGCGGCGGCTTTCGAGGTGGACGAGGCGGCTTTGCACCCGCGGGACCC CCTGCCGAAGTGTTGGAAATGGGCTTGTTCAAGCACGCCGTCGAAGGCGAGATACTCTGCCAGTCGTCCAACGTC AAAGTTCCCTTTTTCAATGCGCCCATATACCTCGAGAACAAGACTCCTATTGGCAAGGTTGACGAGATTCTCGGC CCCATCAACGAGGTATACTTTACCATTAAGCCACAAGAAGGCATCGTTGCCTCAAGCTTTAAGGAGGGCGACAAG TTCTATATTGGAGGCGACAAGCTACTGCCCCTGGAAAAGTTTCTGCCCAAGCCAAAGGTCCTGGGGGAAGCAAAG GTCAAGAAACCTGGCGGAGCGCGCGGTGGACGTGGGGGTGGCAGGGGAGGGAGAGGAGGAAGAGGAGGCCGCGGT GGTGGACGAGGAGCACCGGGTGGCTTCTCGGGTGGCTTCTCGAGGGGCGGTTCCCGGGGCGGGGGCGGCTTCTCA CGAGGGGGCGGCCGCGGCGCAGGGGGTTTTTCCAGAGGAGGGGGAGGCGGTCGGGGTGGCTTTGGTGGCGGCTAC AGAGGACGGGGGAGAGGATAG |
| Gene | >OphauG2|2856 ATGTCGCTTAGAGGCCGTGGCGGCGGCCGCGGCGGCTTTCGAGGTCCGTTTGCCTGTCAATGGCACCCTCCAACA GCTACTAACAATAACCAGGTGGACGAGGCGGCTTTGCACCCGCGGGACCCCCTGCCGAAGTGTTGGAAATGGGCT TGTTCAAGCACGCCGTCGAAGGCGAGATACTCTGCCAGTCGTCCAACGTCAAAGTTCCCTTTTTCAATGCGCCCA TATACCTCGAGAACAAGACTCCTATTGGCAAGGTTGACGAGATTCTCGGCCCCATCAACGAGGTATACTTTACCA TTAAGCCACAAGAAGGCATCGTTGCCTCAAGCTTTAAGGAGGGCGACAAGTTCTATATTGGAGGCGACAAGCTAC TGCCCCTGGAAAAGTTTCTGCCCAAGCCAAAGGTCCTGGGGGAAGCAAAGGTCAAGAAACCTGGCGGAGCGCGCG GTGGACGTGGGGGTGGCAGGGGAGGGAGAGGAGGAAGAGGAGGCCGCGGTGGTGGACGAGGAGCACCGGGTGGCT TCTCGGGTGGCTTCTCGAGGGGCGGTTCCCGGGGCGGGGGCGGCTTCTCACGAGGGGGCGGCCGCGGCGCAGGGG GTTTTTCCAGAGGAGGGGGAGGCGGTCGGGGTGGCTTTGGTGGCGGCTACAGAGGACGGGGGAGAGGATAG |