© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|2831 |
| Gene name | |
| Location | Contig_209:4178..5619 |
| Strand | + |
| Gene length (bp) | 1441 |
| Transcript length (bp) | 1287 |
| Coding sequence length (bp) | 1287 |
| Protein length (aa) | 429 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00432 | Prenyltrans | Prenyltransferase and squalene oxidase repeat | 2.7E-06 | 74 | 121 |
| PF00432 | Prenyltrans | Prenyltransferase and squalene oxidase repeat | 1.8E-05 | 140 | 180 |
| PF00432 | Prenyltrans | Prenyltransferase and squalene oxidase repeat | 1.6E-07 | 195 | 237 |
| PF00432 | Prenyltrans | Prenyltransferase and squalene oxidase repeat | 2.1E-04 | 303 | 328 |
| PF00432 | Prenyltrans | Prenyltransferase and squalene oxidase repeat | 1.4E-03 | 337 | 377 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53609|PGTB1_HUMAN | Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens GN=PGGT1B PE=1 SV=2 | 23 | 389 | 1.0E-39 |
| sp|Q5EAD5|PGTB1_BOVIN | Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus GN=PGGT1B PE=2 SV=1 | 23 | 389 | 2.0E-39 |
| sp|Q8BUY9|PGTB1_MOUSE | Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus GN=Pggt1b PE=1 SV=1 | 23 | 389 | 2.0E-39 |
| sp|P53610|PGTB1_RAT | Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus GN=Pggt1b PE=1 SV=1 | 23 | 389 | 2.0E-39 |
| sp|O80642|PGTB1_ARATH | Geranylgeranyl transferase type-1 subunit beta OS=Arabidopsis thaliana GN=GGB PE=1 SV=1 | 21 | 384 | 1.0E-32 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53609|PGTB1_HUMAN | Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens GN=PGGT1B PE=1 SV=2 | 23 | 389 | 1.0E-39 |
| sp|Q5EAD5|PGTB1_BOVIN | Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus GN=PGGT1B PE=2 SV=1 | 23 | 389 | 2.0E-39 |
| sp|Q8BUY9|PGTB1_MOUSE | Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus GN=Pggt1b PE=1 SV=1 | 23 | 389 | 2.0E-39 |
| sp|P53610|PGTB1_RAT | Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus GN=Pggt1b PE=1 SV=1 | 23 | 389 | 2.0E-39 |
| sp|O80642|PGTB1_ARATH | Geranylgeranyl transferase type-1 subunit beta OS=Arabidopsis thaliana GN=GGB PE=1 SV=1 | 21 | 384 | 1.0E-32 |
| sp|Q55DA3|PGTB1_DICDI | Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium discoideum GN=pggt1b PE=2 SV=1 | 21 | 375 | 3.0E-26 |
| sp|P32434|PGTB1_SCHPO | Geranylgeranyl transferase type-1 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwg2 PE=3 SV=1 | 21 | 388 | 1.0E-24 |
| sp|Q5E9B3|PGTB2_BOVIN | Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1 | 42 | 403 | 4.0E-24 |
| sp|B0G172|PGTB2_DICDI | Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1 | 71 | 376 | 1.0E-23 |
| sp|P53611|PGTB2_HUMAN | Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2 | 42 | 403 | 2.0E-23 |
| sp|Q08603|PGTB2_RAT | Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus GN=Rabggtb PE=1 SV=1 | 42 | 403 | 4.0E-23 |
| sp|P53612|PGTB2_MOUSE | Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus GN=Rabggtb PE=1 SV=2 | 42 | 403 | 7.0E-23 |
| sp|P41992|GGTB2_CAEEL | Probable geranylgeranyl transferase type-2 subunit beta OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2 | 21 | 389 | 9.0E-23 |
| sp|P49355|FNTB_BOVIN | Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2 SV=1 | 20 | 378 | 1.0E-22 |
| sp|Q02293|FNTB_RAT | Protein farnesyltransferase subunit beta OS=Rattus norvegicus GN=Fntb PE=1 SV=1 | 20 | 378 | 1.0E-21 |
| sp|Q8K2I1|FNTB_MOUSE | Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb PE=1 SV=1 | 20 | 378 | 2.0E-21 |
| sp|P49356|FNTB_HUMAN | Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB PE=1 SV=1 | 20 | 378 | 2.0E-21 |
| sp|O13782|FNTB_SCHPO | Protein farnesyltransferase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1 | 25 | 374 | 2.0E-21 |
| sp|P18898|PGTB1_YEAST | Geranylgeranyl transferase type-1 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC43 PE=1 SV=2 | 25 | 389 | 5.0E-21 |
| sp|P20133|PGTB2_YEAST | Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1 SV=3 | 15 | 398 | 9.0E-21 |
| sp|O93830|PGTB2_CANAX | Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 SV=1 | 20 | 399 | 3.0E-18 |
| sp|P46960|PGTB2_SCHPO | Geranylgeranyl transferase type-2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ptb1 PE=3 SV=1 | 20 | 400 | 2.0E-15 |
| sp|Q04903|FNTB_PEA | Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB PE=1 SV=1 | 8 | 330 | 2.0E-12 |
| sp|P22007|FNTB_YEAST | Protein farnesyltransferase subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1 SV=2 | 18 | 375 | 2.0E-09 |
| sp|Q38920|FNTB_ARATH | Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana GN=FTB PE=1 SV=3 | 21 | 330 | 2.0E-09 |
| sp|Q55D51|FNTB_DICDI | Protein farnesyltransferase subunit beta OS=Dictyostelium discoideum GN=fntB PE=3 SV=1 | 131 | 381 | 9.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|2831 MQSVAARLKSHTANMAHEPVLQRDKHVRYWQRCHKTYLPSVYTSNDSTRVTFAYFIISALDVLHVPLSAHDGTAI RRWILGLQHPDGGFCGSPAHMPAGQQPGSINGSANLAATYFALLLLGAAAATDDEARAAFACVRRKKLLRWLRTL QREDGSFGQLVWDGKAMGGHDVRHSYFASCVRWMLRDAADQEDINLDTMVAYIRQGQTYDGGLAEASDHESHAGY AYCGVAALYMLHRPCNERRDALKRGVAHDESLISFLIHRPFDYQAKEEEADEVGENYIEAKLGQLGLCQASRHPT HIGYNGRCNKKADTCYCWWVAATLKMLGSLGLVDADSSRRYILDITQHRIGGFAKAVGRPPDIYHSYLGLAALAL LDHKELKPFDAGLCCSLDMARKIALAREGADGARETSFDEDGFWQVAAQAYKE* |
| Coding | >OphauG2|2831 ATGCAATCTGTTGCAGCTCGACTCAAAAGCCACACAGCAAACATGGCACATGAGCCCGTCTTGCAAAGGGACAAA CACGTCCGCTACTGGCAGCGCTGCCACAAGACATACCTCCCCAGCGTCTACACCTCCAACGACTCGACGCGCGTC ACGTTTGCATACTTCATCATCTCAGCCCTAGATGTCCTCCATGTCCCCCTCTCAGCGCACGACGGCACCGCCATT CGACGCTGGATACTTGGTCTACAGCATCCAGACGGCGGCTTTTGCGGCAGCCCGGCGCATATGCCCGCAGGGCAG CAGCCTGGCAGCATCAACGGAAGCGCAAACCTCGCTGCCACGTATTTCGCCCTGCTGTTGCTTGGTGCTGCCGCC GCGACTGACGACGAGGCGCGCGCCGCCTTTGCCTGCGTGCGGAGGAAAAAGCTGCTCAGGTGGTTGCGGACGCTA CAGCGTGAGGATGGGAGTTTTGGGCAGTTGGTGTGGGACGGGAAAGCCATGGGTGGGCACGACGTGCGCCACAGC TACTTTGCGAGCTGTGTGCGCTGGATGCTGAGAGACGCAGCTGACCAGGAGGATATAAATCTTGACACCATGGTG GCATATATTCGGCAGGGACAGACGTACGATGGAGGCCTTGCAGAAGCCTCGGACCATGAGTCGCATGCTGGGTAT GCGTACTGTGGCGTCGCCGCACTATATATGCTTCATCGACCCTGTAATGAGCGACGGGATGCATTGAAAAGGGGC GTAGCGCATGATGAGAGCTTGATTAGCTTCCTCATCCATCGCCCATTCGACTACCAGGCCAAAGAGGAAGAGGCT GATGAGGTGGGAGAAAACTACATCGAGGCAAAGTTGGGCCAGCTCGGCTTGTGTCAAGCATCCAGACACCCTACG CATATCGGGTATAATGGCAGATGCAACAAGAAGGCAGATACATGCTACTGCTGGTGGGTAGCTGCAACACTCAAA ATGCTCGGCAGTTTGGGTTTGGTTGACGCCGACTCATCACGCAGATACATTCTCGACATCACACAGCATCGCATC GGCGGCTTCGCAAAGGCCGTGGGCCGGCCGCCAGACATTTACCACTCGTACTTGGGACTGGCGGCCCTGGCGCTG CTTGATCACAAGGAGCTCAAGCCGTTTGATGCTGGCTTGTGCTGTAGCCTGGACATGGCGCGCAAGATTGCCTTG GCAAGAGAGGGAGCTGATGGAGCGAGGGAAACGAGCTTTGATGAGGATGGCTTTTGGCAAGTTGCTGCACAGGCG TACAAGGAATGA |
| Transcript | >OphauG2|2831 ATGCAATCTGTTGCAGCTCGACTCAAAAGCCACACAGCAAACATGGCACATGAGCCCGTCTTGCAAAGGGACAAA CACGTCCGCTACTGGCAGCGCTGCCACAAGACATACCTCCCCAGCGTCTACACCTCCAACGACTCGACGCGCGTC ACGTTTGCATACTTCATCATCTCAGCCCTAGATGTCCTCCATGTCCCCCTCTCAGCGCACGACGGCACCGCCATT CGACGCTGGATACTTGGTCTACAGCATCCAGACGGCGGCTTTTGCGGCAGCCCGGCGCATATGCCCGCAGGGCAG CAGCCTGGCAGCATCAACGGAAGCGCAAACCTCGCTGCCACGTATTTCGCCCTGCTGTTGCTTGGTGCTGCCGCC GCGACTGACGACGAGGCGCGCGCCGCCTTTGCCTGCGTGCGGAGGAAAAAGCTGCTCAGGTGGTTGCGGACGCTA CAGCGTGAGGATGGGAGTTTTGGGCAGTTGGTGTGGGACGGGAAAGCCATGGGTGGGCACGACGTGCGCCACAGC TACTTTGCGAGCTGTGTGCGCTGGATGCTGAGAGACGCAGCTGACCAGGAGGATATAAATCTTGACACCATGGTG GCATATATTCGGCAGGGACAGACGTACGATGGAGGCCTTGCAGAAGCCTCGGACCATGAGTCGCATGCTGGGTAT GCGTACTGTGGCGTCGCCGCACTATATATGCTTCATCGACCCTGTAATGAGCGACGGGATGCATTGAAAAGGGGC GTAGCGCATGATGAGAGCTTGATTAGCTTCCTCATCCATCGCCCATTCGACTACCAGGCCAAAGAGGAAGAGGCT GATGAGGTGGGAGAAAACTACATCGAGGCAAAGTTGGGCCAGCTCGGCTTGTGTCAAGCATCCAGACACCCTACG CATATCGGGTATAATGGCAGATGCAACAAGAAGGCAGATACATGCTACTGCTGGTGGGTAGCTGCAACACTCAAA ATGCTCGGCAGTTTGGGTTTGGTTGACGCCGACTCATCACGCAGATACATTCTCGACATCACACAGCATCGCATC GGCGGCTTCGCAAAGGCCGTGGGCCGGCCGCCAGACATTTACCACTCGTACTTGGGACTGGCGGCCCTGGCGCTG CTTGATCACAAGGAGCTCAAGCCGTTTGATGCTGGCTTGTGCTGTAGCCTGGACATGGCGCGCAAGATTGCCTTG GCAAGAGAGGGAGCTGATGGAGCGAGGGAAACGAGCTTTGATGAGGATGGCTTTTGGCAAGTTGCTGCACAGGCG TACAAGGAATGA |
| Gene | >OphauG2|2831 ATGCAATCTGTTGCAGCTCGACTCAAAAGCCACACAGCAAACATGGCACATGAGCCCGTCTTGCAAAGGGACAAA CACGTCCGCTACTGGCAGCGCTGCCACAAGACATACCTCCCCAGCGTCTACACCTCCAACGACTCGACGCGCGTC ACGTTTGCATACTTCATCATCTCAGCCCTAGATGTCCTCCATGTCCCCCTCTCAGCGCACGACGGCACCGCCATT CGACGCTGGATACTTGGTCTACAGCATCCAGACGGCGGCTTTTGCGGCAGCCCGGCGCATATGCCCGCAGGGCAG CAGCCTGGCAGCATCAACGGAAGCGCAAACCTCGCTGCCACGTATTTCGCCCTGCTGTTGCTTGGTGCTGCCGCC GCGACTGACGACGAGGCGCGCGCCGCCTTTGCCTGCGTGCGGAGGAAAAAGCTGCTCAGGTGGTTGCGGACGCTA CAGCGTGAGGATGGGAGTTTTGGGCAGTTGGTGTGGGACGGGAAAGCCATGGGTGGGCACGACGTGCGCCACAGC TACTTTGCGAGCTGTGTGCGCTGGATGCTGAGAGACGCAGCTGACCAGGAGGATATAAATCTTGACACCATGGTG GCATATATTCGGCAGGGACAGGTCAGTGCCAAATACCTTGACACGGCCATTCATCTGACCCCAAGCAGACGTACG ATGGAGGCCTTGCAGAAGCCTCGGACCATGAGTCGCATGGTATCTTGCTTGCCCACGCTTGTGCCCAACATGGCT GACTTGGGCTAGCTGGGTATGCGTACTGTGGCGTCGCCGCACTATATATGCTTCATCGACCCTGTAATGAGCGAC GGGATGCATTGAAAAGGGGCGTAGCGCATGATGAGAGCTTGATTAGCTTCCTCATCCATCGCCCATTCGACTACC AGGCCAAAGAGGAAGAGGCTGATGAGGTGGGAGAAAACTACATCGAGGCAAAGTTGGGCCAGCTCGGCTTGTGTC AAGCATCCAGACACCCTACGCATATCGGGTATAATGGCAGATGCAACAAGAAGGCAGATACATGCTACTGCTGGT GGGTAGCTGCAACACTCAAAGTATGTCAGCTCCCAGACATAATCTCCATTCGCAAAGCAAACAGCTAACTCAGAG GCAGATGCTCGGCAGTTTGGGTTTGGTTGACGCCGACTCATCACGCAGATACATTCTCGACATCACACAGCATCG CATCGGCGGCTTCGCAAAGGCCGTGGGCCGGCCGCCAGACATTTACCACTCGTACTTGGGACTGGCGGCCCTGGC GCTGCTTGATCACAAGGAGCTCAAGCCGTTTGATGCTGGCTTGTGCTGTAGCCTGGACATGGCGCGCAAGATTGC CTTGGCAAGAGAGGGAGCTGATGGAGCGAGGGAAACGAGCTTTGATGAGGATGGCTTTTGGCAAGTTGCTGCACA GGCGTACAAGGAATGA |