Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|2759
Gene name
LocationContig_204:16254..16703
Strand+
Gene length (bp)449
Transcript length (bp)318
Coding sequence length (bp)318
Protein length (aa) 106

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 1.3E-12 9 89

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|A4IGZ4|LSMD1_XENTR N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis GN=naa38 PE=3 SV=2 6 94 3.0E-15
sp|Q6GQ67|LMD1A_XENLA N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-a PE=3 SV=1 6 94 3.0E-15
sp|Q6NU60|LMD1B_XENLA N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-b PE=3 SV=1 6 94 7.0E-15
sp|Q9BRA0|LSMD1_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo sapiens GN=NAA38 PE=1 SV=1 6 95 6.0E-14
sp|Q9D2U5|LSMD1_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus musculus GN=Naa38 PE=1 SV=1 6 95 6.0E-14
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|A4IGZ4|LSMD1_XENTR N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis GN=naa38 PE=3 SV=2 6 94 3.0E-15
sp|Q6GQ67|LMD1A_XENLA N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-a PE=3 SV=1 6 94 3.0E-15
sp|Q6NU60|LMD1B_XENLA N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-b PE=3 SV=1 6 94 7.0E-15
sp|Q9BRA0|LSMD1_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo sapiens GN=NAA38 PE=1 SV=1 6 95 6.0E-14
sp|Q9D2U5|LSMD1_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus musculus GN=Naa38 PE=1 SV=1 6 95 6.0E-14
sp|A2BIG9|LSMD1_DANRE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio GN=naa38 PE=3 SV=1 6 94 2.0E-12
sp|Q10163|RSMB_SCHPO Small nuclear ribonucleoprotein-associated protein B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smb1 PE=1 SV=1 12 94 4.0E-08
sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1 14 102 1.0E-06
sp|P40018|RSMB_YEAST Small nuclear ribonucleoprotein-associated protein B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMB1 PE=1 SV=1 3 89 5.0E-06
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GO

(None)

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup1902
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|2759 (this protein)
Ophiocordyceps australis map64 (Brazil) OphauB2|4422
Ophiocordyceps camponoti-floridani Ophcf2|03375
Ophiocordyceps camponoti-rufipedis Ophun1|579
Ophiocordyceps kimflemingae Ophio5|797
Ophiocordyceps subramaniannii Hirsu2|199

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|2759
MAQLEARSYLESLLNQNLRVHTTDGRLFWGSLKCTDADMNVVLANTYEYRQPSIRSLRRQMVQTGASSVKADMTS
RYLGLVVVPGQHVVKLELEQFASQISDGTT*
Coding >OphauG2|2759
ATGGCTCAGCTCGAGGCACGCAGCTACCTTGAATCTCTGCTGAATCAGAACCTTCGCGTCCACACCACTGATGGA
CGTCTCTTCTGGGGCTCCTTGAAGTGCACCGACGCTGATATGAATGTCGTCTTGGCAAACACTTACGAGTATCGG
CAACCCTCTATACGTTCGCTGCGCCGCCAAATGGTCCAGACCGGGGCGTCGTCGGTCAAGGCGGATATGACCTCG
CGCTATCTGGGACTAGTGGTAGTTCCCGGCCAGCACGTTGTCAAGTTGGAGTTGGAGCAGTTTGCAAGTCAAATT
AGCGACGGCACGACGTAA
Transcript >OphauG2|2759
ATGGCTCAGCTCGAGGCACGCAGCTACCTTGAATCTCTGCTGAATCAGAACCTTCGCGTCCACACCACTGATGGA
CGTCTCTTCTGGGGCTCCTTGAAGTGCACCGACGCTGATATGAATGTCGTCTTGGCAAACACTTACGAGTATCGG
CAACCCTCTATACGTTCGCTGCGCCGCCAAATGGTCCAGACCGGGGCGTCGTCGGTCAAGGCGGATATGACCTCG
CGCTATCTGGGACTAGTGGTAGTTCCCGGCCAGCACGTTGTCAAGTTGGAGTTGGAGCAGTTTGCAAGTCAAATT
AGCGACGGCACGACGTAA
Gene >OphauG2|2759
ATGGCTCAGCTCGAGGCACGCAGCTACCTTGAATCTCTGCTGAATCAGAACCTTCGCGTCCACACCACTGATGGA
CGTCTCTTCTGGGGCTCCTTGAAGTGCACCGACGCTGTTCGTCTCACGAAGCCCCTTGGACCCCCCCCTTTGCCT
CGTCACCTTGGACACGCTCGCTTGTTTTCTCCTCGTGCCCGCCTTTTCCGACTGACGCTGACTCGCTCACATGAA
CTATTCACAACGGGCAGGATATGAATGTCGTCTTGGCAAACACTTACGAGTATCGGCAACCCTCTATACGTTCGC
TGCGCCGCCAAATGGTCCAGACCGGGGCGTCGTCGGTCAAGGCGGATATGACCTCGCGCTATCTGGGACTAGTGG
TAGTTCCCGGCCAGCACGTTGTCAAGTTGGAGTTGGAGCAGTTTGCAAGTCAAATTAGCGACGGCACGACGTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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