Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|2727
Gene name
LocationContig_202:8896..9525
Strand-
Gene length (bp)629
Transcript length (bp)567
Coding sequence length (bp)567
Protein length (aa) 189

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit 1.2E-15 60 182

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O74882|SDH3_SCHPO Succinate dehydrogenase cytochrome B subunit, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sdh3 PE=3 SV=1 40 186 2.0E-26
sp|Q04487|SHH3_YEAST Mitochondrial inner membrane protein SHH3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHH3 PE=3 SV=1 49 175 1.0E-13
sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Caenorhabditis elegans GN=mev-1 PE=2 SV=1 18 160 1.0E-11
sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Caenorhabditis briggsae GN=mev-1 PE=2 SV=1 18 182 6.0E-11
sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Bos taurus GN=SDHC PE=1 SV=2 63 185 3.0E-07
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O74882|SDH3_SCHPO Succinate dehydrogenase cytochrome B subunit, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sdh3 PE=3 SV=1 40 186 2.0E-26
sp|Q04487|SHH3_YEAST Mitochondrial inner membrane protein SHH3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHH3 PE=3 SV=1 49 175 1.0E-13
sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Caenorhabditis elegans GN=mev-1 PE=2 SV=1 18 160 1.0E-11
sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Caenorhabditis briggsae GN=mev-1 PE=2 SV=1 18 182 6.0E-11
sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Bos taurus GN=SDHC PE=1 SV=2 63 185 3.0E-07
sp|P80481|C560_RECAM Succinate dehydrogenase cytochrome b560 subunit OS=Reclinomonas americana GN=SDH3 PE=3 SV=1 63 182 5.0E-07
sp|D0VWV4|C560_PIG Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Sus scrofa GN=SDHC PE=1 SV=2 63 173 2.0E-06
sp|P33421|SDH3_YEAST Succinate dehydrogenase [ubiquinone] cytochrome b subunit, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDH3 PE=1 SV=1 34 184 2.0E-06
sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Cricetulus griseus GN=SDHC PE=2 SV=1 63 185 3.0E-06
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GO

GO Term Description Terminal node
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors Yes
GO:0003674 molecular_function No
GO:0003824 catalytic activity No
GO:0016491 oxidoreductase activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 25 0.45

Transmembrane Domains

Domain # Start End Length
1 90 112 22
2 122 144 22
3 165 187 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|2727
MNAQRVGLAALRKGIAHTPALARASPALLLATTLPSTPVRSSTSSTHISTTEASQILAAQRRNRPVSPHLGIYKV
NQTWFGASAWTRITGCTLSGVAYAYFAAYLVSPLLGLHIESASLAAAFAAWPLAVKGFFKLALSFPFAFHFFSGC
KHLIYDMGKGFAKQTIRNGEIALWGVSFASALYLAFGL*
Coding >OphauG2|2727
ATGAATGCTCAACGTGTTGGCCTCGCCGCCCTGCGCAAAGGCATCGCCCACACTCCCGCTCTAGCCCGCGCCTCT
CCCGCTCTCCTCCTCGCCACCACTCTTCCCTCAACGCCCGTCCGCTCCTCAACATCATCCACCCACATCTCCACC
ACGGAAGCCAGCCAAATCCTCGCTGCCCAGCGCCGCAACCGCCCCGTGTCGCCTCACCTCGGCATCTACAAGGTC
AATCAAACGTGGTTTGGTGCCTCGGCCTGGACGCGCATCACCGGCTGCACCCTCTCGGGCGTTGCGTATGCTTAC
TTTGCTGCATATCTCGTCTCCCCGCTCCTCGGCCTTCATATTGAGAGCGCCAGTCTGGCTGCCGCCTTTGCTGCT
TGGCCACTCGCTGTAAAGGGCTTTTTCAAACTTGCCCTCAGCTTCCCCTTTGCTTTTCACTTTTTCTCCGGCTGC
AAACATTTGATCTATGACATGGGCAAGGGCTTTGCCAAGCAAACTATCCGAAATGGCGAAATTGCTCTCTGGGGA
GTCAGCTTTGCTTCAGCACTCTACCTTGCCTTTGGTCTATAA
Transcript >OphauG2|2727
ATGAATGCTCAACGTGTTGGCCTCGCCGCCCTGCGCAAAGGCATCGCCCACACTCCCGCTCTAGCCCGCGCCTCT
CCCGCTCTCCTCCTCGCCACCACTCTTCCCTCAACGCCCGTCCGCTCCTCAACATCATCCACCCACATCTCCACC
ACGGAAGCCAGCCAAATCCTCGCTGCCCAGCGCCGCAACCGCCCCGTGTCGCCTCACCTCGGCATCTACAAGGTC
AATCAAACGTGGTTTGGTGCCTCGGCCTGGACGCGCATCACCGGCTGCACCCTCTCGGGCGTTGCGTATGCTTAC
TTTGCTGCATATCTCGTCTCCCCGCTCCTCGGCCTTCATATTGAGAGCGCCAGTCTGGCTGCCGCCTTTGCTGCT
TGGCCACTCGCTGTAAAGGGCTTTTTCAAACTTGCCCTCAGCTTCCCCTTTGCTTTTCACTTTTTCTCCGGCTGC
AAACATTTGATCTATGACATGGGCAAGGGCTTTGCCAAGCAAACTATCCGAAATGGCGAAATTGCTCTCTGGGGA
GTCAGCTTTGCTTCAGCACTCTACCTTGCCTTTGGTCTATAA
Gene >OphauG2|2727
ATGAATGCTCAACGTGTTGGCCTCGCCGCCCTGCGCAAAGGTAAAAAGTCGCTCCTCATTCTTCCCTTTTATACT
TGCGCCCCTCAAACTCACCCATGACAGGCATCGCCCACACTCCCGCTCTAGCCCGCGCCTCTCCCGCTCTCCTCC
TCGCCACCACTCTTCCCTCAACGCCCGTCCGCTCCTCAACATCATCCACCCACATCTCCACCACGGAAGCCAGCC
AAATCCTCGCTGCCCAGCGCCGCAACCGCCCCGTGTCGCCTCACCTCGGCATCTACAAGGTCAATCAAACGTGGT
TTGGTGCCTCGGCCTGGACGCGCATCACCGGCTGCACCCTCTCGGGCGTTGCGTATGCTTACTTTGCTGCATATC
TCGTCTCCCCGCTCCTCGGCCTTCATATTGAGAGCGCCAGTCTGGCTGCCGCCTTTGCTGCTTGGCCACTCGCTG
TAAAGGGCTTTTTCAAACTTGCCCTCAGCTTCCCCTTTGCTTTTCACTTTTTCTCCGGCTGCAAACATTTGATCT
ATGACATGGGCAAGGGCTTTGCCAAGCAAACTATCCGAAATGGCGAAATTGCTCTCTGGGGAGTCAGCTTTGCTT
CAGCACTCTACCTTGCCTTTGGTCTATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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