© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | OphauG2|2638 |
| Gene name | |
| Location | Contig_2:20039..22204 |
| Strand | - |
| Gene length (bp) | 2165 |
| Transcript length (bp) | 1857 |
| Coding sequence length (bp) | 1857 |
| Protein length (aa) | 619 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00641 | zf-RanBP | Zn-finger in Ran binding protein and others | 5.7E-11 | 350 | 377 |
| PF00641 | zf-RanBP | Zn-finger in Ran binding protein and others | 4.3E-07 | 428 | 457 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.9E-08 | 255 | 322 |
| PF00929 | RNase_T | Exonuclease | 2.6E-05 | 19 | 127 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13801|YE04_SCHPO | Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.04c PE=1 SV=1 | 8 | 465 | 4.0E-121 |
| sp|P32770|NRP1_YEAST | Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRP1 PE=1 SV=2 | 105 | 377 | 8.0E-78 |
| sp|P32770|NRP1_YEAST | Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRP1 PE=1 SV=2 | 417 | 487 | 3.0E-08 |
| sp|Q8C460|ERI3_MOUSE | ERI1 exoribonuclease 3 OS=Mus musculus GN=Eri3 PE=1 SV=1 | 4 | 149 | 3.0E-08 |
| sp|Q5HZL1|ERI2_XENLA | ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 PE=2 SV=1 | 13 | 160 | 9.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|2638 MSAPPQLNVDRYVVIHVATTCDEHGVYVTKDSAEVIELGWILLDANSLEEITHDSALVKPVNTPITPLCTSLTTL TWEHVRNAGTFRDAISRFDTFATEYLTSKNLDFVFVTLDAWDLRVQLPREARDKAVVLPPYLQHSRTFDLRTEYQ RWQQHHPESLPFGPSMLSNICAALEVEPVQCSAPIKHNLPFHLQALAPASPRRAMEEAITLARVLRGLIRKSQPP QDHPDVLTRPMDARADVRAFLSERSKVLHMSGLPHDTTQSELESWFTQFGGRPIAFWTLRTPEQHKPTGTGFAVF SSHEEAAESLCMNGRALNEKAIEVSPSSSRVLDRAQDILTPFPPSKNRPRPGDWTCPSCGFSNFQRRTACFRCSF PAMGPGAGGDMAGPSGYGYNYGPPAMMAPPHGGHHGPMGHGGRMGSSGVVPFRAGDWKCGNEVCGYHNFAKNVCC LRCGASRAGAAVVADSGYPSPMDNSSPYSMSGGSMAGTPAPGPFGSGNSFASGSGYNQHFGGPPSHFLPSGLGGG AGAYPSALNTQGFGAAPGSHSAGPFDSRAAEAAFQSATNGPASAGPGPTNNFYNNNGENDPFAFLTTGIAGLTVG GNDARQNGGGAPPSKSPA* |
| Coding | >OphauG2|2638 ATGTCTGCGCCTCCGCAGCTCAACGTCGATCGCTACGTCGTTATCCATGTGGCTACGACGTGTGACGAACACGGA GTTTACGTCACCAAGGACTCGGCCGAGGTTATCGAGCTTGGATGGATTCTTCTTGATGCCAACTCTCTCGAGGAG ATTACCCACGACAGTGCTCTGGTGAAGCCTGTTAATACTCCAATTACTCCTCTGTGCACCAGCCTGACCACTCTC ACCTGGGAGCACGTGCGAAATGCCGGAACCTTTCGAGATGCCATTTCTCGGTTCGATACTTTTGCTACCGAGTAT CTCACCTCCAAGAACCTCGACTTCGTCTTTGTCACCCTCGATGCTTGGGATCTCCGCGTCCAGCTTCCTAGGGAA GCTCGTGACAAGGCAGTCGTGCTGCCTCCCTATCTCCAGCACTCCCGAACCTTTGATCTTCGAACCGAATATCAG CGCTGGCAACAGCATCATCCCGAGTCTCTCCCCTTTGGGCCCTCAATGCTGTCCAATATCTGCGCTGCTCTCGAG GTAGAGCCTGTGCAATGCAGCGCTCCCATAAAACACAACCTGCCATTTCATTTGCAGGCCCTCGCTCCCGCCTCG CCACGCCGCGCCATGGAAGAGGCCATTACCCTTGCTCGTGTGCTGCGAGGGCTGATTCGCAAGTCCCAGCCCCCG CAGGATCACCCGGATGTCTTGACTAGACCCATGGATGCTAGGGCTGACGTCCGCGCTTTCTTGTCTGAGAGAAGT AAAGTGCTCCACATGTCGGGGCTTCCCCACGATACCACCCAGTCTGAACTTGAAAGCTGGTTCACCCAGTTTGGC GGCCGCCCAATTGCCTTTTGGACGCTGCGCACCCCGGAGCAGCATAAGCCAACGGGAACGGGCTTTGCCGTCTTC TCATCTCATGAAGAGGCAGCTGAAAGCTTGTGCATGAATGGGCGTGCACTCAACGAAAAGGCCATTGAGGTGTCG CCCTCGTCGAGCCGGGTTCTAGACCGTGCCCAGGACATACTTACCCCGTTTCCCCCCAGCAAGAACCGGCCGAGG CCGGGTGACTGGACCTGCCCTTCTTGTGGCTTCTCCAATTTCCAGCGCCGAACAGCATGCTTCCGATGCTCCTTT CCTGCCATGGGACCCGGAGCTGGAGGTGACATGGCAGGCCCCAGCGGATACGGATATAATTATGGGCCTCCTGCC ATGATGGCTCCTCCTCATGGCGGCCATCATGGTCCAATGGGCCATGGCGGCCGAATGGGAAGCAGTGGTGTCGTG CCCTTCCGAGCCGGTGATTGGAAATGCGGCAATGAAGTATGTGGCTACCACAACTTTGCCAAGAATGTCTGCTGT CTTCGCTGCGGTGCCAGCCGCGCCGGAGCGGCCGTGGTTGCCGACTCTGGGTACCCGTCGCCAATGGACAATTCG TCTCCGTACAGCATGAGTGGTGGCTCCATGGCTGGGACGCCCGCCCCAGGGCCCTTTGGTTCTGGCAATTCATTT GCGTCTGGCTCTGGCTACAACCAGCACTTTGGGGGCCCTCCAAGCCATTTCCTGCCATCGGGTCTCGGAGGAGGC GCTGGAGCTTATCCCAGCGCCCTCAACACACAGGGCTTTGGCGCAGCGCCAGGCTCACACTCTGCTGGGCCCTTT GATAGCAGGGCTGCCGAAGCTGCTTTCCAGTCTGCAACGAATGGCCCCGCCTCGGCCGGCCCTGGCCCGACCAAC AACTTTTACAACAACAATGGCGAGAATGATCCCTTTGCCTTCTTGACGACGGGGATTGCTGGCCTCACGGTGGGA GGCAACGATGCTCGTCAGAATGGCGGCGGTGCTCCCCCGAGCAAGTCTCCCGCTTAA |
| Transcript | >OphauG2|2638 ATGTCTGCGCCTCCGCAGCTCAACGTCGATCGCTACGTCGTTATCCATGTGGCTACGACGTGTGACGAACACGGA GTTTACGTCACCAAGGACTCGGCCGAGGTTATCGAGCTTGGATGGATTCTTCTTGATGCCAACTCTCTCGAGGAG ATTACCCACGACAGTGCTCTGGTGAAGCCTGTTAATACTCCAATTACTCCTCTGTGCACCAGCCTGACCACTCTC ACCTGGGAGCACGTGCGAAATGCCGGAACCTTTCGAGATGCCATTTCTCGGTTCGATACTTTTGCTACCGAGTAT CTCACCTCCAAGAACCTCGACTTCGTCTTTGTCACCCTCGATGCTTGGGATCTCCGCGTCCAGCTTCCTAGGGAA GCTCGTGACAAGGCAGTCGTGCTGCCTCCCTATCTCCAGCACTCCCGAACCTTTGATCTTCGAACCGAATATCAG CGCTGGCAACAGCATCATCCCGAGTCTCTCCCCTTTGGGCCCTCAATGCTGTCCAATATCTGCGCTGCTCTCGAG GTAGAGCCTGTGCAATGCAGCGCTCCCATAAAACACAACCTGCCATTTCATTTGCAGGCCCTCGCTCCCGCCTCG CCACGCCGCGCCATGGAAGAGGCCATTACCCTTGCTCGTGTGCTGCGAGGGCTGATTCGCAAGTCCCAGCCCCCG CAGGATCACCCGGATGTCTTGACTAGACCCATGGATGCTAGGGCTGACGTCCGCGCTTTCTTGTCTGAGAGAAGT AAAGTGCTCCACATGTCGGGGCTTCCCCACGATACCACCCAGTCTGAACTTGAAAGCTGGTTCACCCAGTTTGGC GGCCGCCCAATTGCCTTTTGGACGCTGCGCACCCCGGAGCAGCATAAGCCAACGGGAACGGGCTTTGCCGTCTTC TCATCTCATGAAGAGGCAGCTGAAAGCTTGTGCATGAATGGGCGTGCACTCAACGAAAAGGCCATTGAGGTGTCG CCCTCGTCGAGCCGGGTTCTAGACCGTGCCCAGGACATACTTACCCCGTTTCCCCCCAGCAAGAACCGGCCGAGG CCGGGTGACTGGACCTGCCCTTCTTGTGGCTTCTCCAATTTCCAGCGCCGAACAGCATGCTTCCGATGCTCCTTT CCTGCCATGGGACCCGGAGCTGGAGGTGACATGGCAGGCCCCAGCGGATACGGATATAATTATGGGCCTCCTGCC ATGATGGCTCCTCCTCATGGCGGCCATCATGGTCCAATGGGCCATGGCGGCCGAATGGGAAGCAGTGGTGTCGTG CCCTTCCGAGCCGGTGATTGGAAATGCGGCAATGAAGTATGTGGCTACCACAACTTTGCCAAGAATGTCTGCTGT CTTCGCTGCGGTGCCAGCCGCGCCGGAGCGGCCGTGGTTGCCGACTCTGGGTACCCGTCGCCAATGGACAATTCG TCTCCGTACAGCATGAGTGGTGGCTCCATGGCTGGGACGCCCGCCCCAGGGCCCTTTGGTTCTGGCAATTCATTT GCGTCTGGCTCTGGCTACAACCAGCACTTTGGGGGCCCTCCAAGCCATTTCCTGCCATCGGGTCTCGGAGGAGGC GCTGGAGCTTATCCCAGCGCCCTCAACACACAGGGCTTTGGCGCAGCGCCAGGCTCACACTCTGCTGGGCCCTTT GATAGCAGGGCTGCCGAAGCTGCTTTCCAGTCTGCAACGAATGGCCCCGCCTCGGCCGGCCCTGGCCCGACCAAC AACTTTTACAACAACAATGGCGAGAATGATCCCTTTGCCTTCTTGACGACGGGGATTGCTGGCCTCACGGTGGGA GGCAACGATGCTCGTCAGAATGGCGGCGGTGCTCCCCCGAGCAAGTCTCCCGCTTAA |
| Gene | >OphauG2|2638 ATGTCTGCGCCTCCGCAGCTCAACGTCGATCGCTACGTCGTTATCCATGTGGCTACGACGTGTGACGAACACGGA GTTTACGTCACCAAGGACTCGGCCGAGGTTATCGAGCTTGGATGGATTCTTCTTGATGCCAACTCTCTCGAGGAG GTCAGTCGTCTTGCCCTCAGCTTCCTTGAGCGCCCGACTGACGTCCAGGGTAGATTACCCACGACAGTGCTCTGG TGAAGCCTGTTAATACTCCAATTACTCCTCTGTGCAGTATGCAACTCGAATGCGCTTTTTTATATTCCTTGTCCC GCGTCTTGTTGTCGAGTCTCGCTGGCTGAGCCAGCTTGGACAAGACTTGTTATGTTTTGTCAATTCTCGTCCCTC GAGTCCTTCTAGCCCTCCAAAACTCGTGTCGAGCAAGGCTGACAAGTGCTCTCTCAATTCAGCCAGCCTGACCAC TCTCACCTGGGAGCACGTGCGAAATGCCGGAACCTTTCGAGATGCCATTTCTCGGTTCGATACTTTTGCTACCGA GTATCTCACCTCCAAGAACCTCGACTTCGTCTTTGTCACCCTCGATGCTTGGGATCTCCGCGTCCAGCTTCCTAG GGAAGCTCGTGACAAGGCAGTCGTGCTGCCTCCCTATCTCCAGCACTCCCGAACCTTTGATCTTCGAACCGAATA TCAGCGCTGGCAACAGCATCATCCCGAGTCTCTCCCCTTTGGGCCCTCAATGCTGTCCAATATCTGCGCTGCTCT CGAGGTAGAGCCTGTGCAATGCAGCGCTCCCATAAAACACAACCTGCCATTTCATTTGCAGGCCCTCGCTCCCGC CTCGCCACGCCGCGCCATGGAAGAGGCCATTACCCTTGCTCGTGTGCTGCGAGGGCTGATTCGCAAGTCCCAGCC CCCGCAGGATCACCCGGATGTCTTGACTAGACCCATGGATGCTAGGGCTGACGTCCGCGCTTTCTTGTCTGAGAG AAGTAAAGTGCTCCACATGTCGGGGCTTCCCCACGATACCACCCAGTCTGAACTTGAAAGCTGGTTCACCCAGTT TGGCGGCCGCCCAATTGCCTTTTGGACGCTGCGCACCCCGGAGCAGCATAAGCCAACGGGAACGGGCTTTGCCGT CTTCTCATCTCATGAAGAGGTAACTTCAACTTGTGCCTTTGAATCACGCGTGGACGAGCCGTTTAGCATTGTGAA GACGGCTGACTCGAATGATGCAGGCAGCTGAAAGCTTGTGCATGAATGGGCGTGCACTCAACGAAAAGGCCATTG AGGTGTCGCCCTCGTCGAGCCGGGTTCTAGACCGTGCCCAGGACATACTTACCCCGTTTCCCCCCAGCAAGAACC GGCCGAGGCCGGGTGACTGGACCTGCCCTTCTTGTGGCTTCTCCAATTTCCAGCGCCGAACAGCATGCTTCCGAT GCTCCTTTCCTGCCATGGGACCCGGAGCTGGAGGTGACATGGCAGGCCCCAGCGGATACGGATATAATTATGGGC CTCCTGCCATGATGGCTCCTCCTCATGGCGGCCATCATGGTCCAATGGGCCATGGCGGCCGAATGGGAAGCAGTG GTGTCGTGCCCTTCCGAGCCGGTGATTGGAAATGCGGCAATGAAGTATGTGGCTACCACAACTTTGCCAAGAATG TCTGCTGTCTTCGCTGCGGTGCCAGCCGCGCCGGAGCGGCCGTGGTTGCCGACTCTGGGTACCCGTCGCCAATGG ACAATTCGTCTCCGTACAGCATGAGTGGTGGCTCCATGGCTGGGACGCCCGCCCCAGGGCCCTTTGGTTCTGGCA ATTCATTTGCGTCTGGCTCTGGCTACAACCAGCACTTTGGGGGCCCTCCAAGCCATTTCCTGCCATCGGGTCTCG GAGGAGGCGCTGGAGCTTATCCCAGCGCCCTCAACACACAGGGCTTTGGCGCAGCGCCAGGCTCACACTCTGCTG GGCCCTTTGATAGCAGGGCTGCCGAAGCTGCTTTCCAGTCTGCAACGAATGGCCCCGCCTCGGCCGGCCCTGGCC CGACCAACAACTTTTACAACAACAATGGCGAGAATGATCCCTTTGCCTTCTTGACGACGGGGATTGCTGGCCTCA CGGTGGGAGGCAACGATGCTCGTCAGAATGGCGGCGGTGCTCCCCCGAGCAAGTCTCCCGCTTAA |