© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|2632 |
| Gene name | |
| Location | Contig_2:583..2731 |
| Strand | - |
| Gene length (bp) | 2148 |
| Transcript length (bp) | 2148 |
| Coding sequence length (bp) | 2148 |
| Protein length (aa) | 716 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00443 | UCH | Ubiquitin carboxyl-terminal hydrolase | 6.2E-38 | 154 | 632 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25037|UBP1_YEAST | Ubiquitin carboxyl-terminal hydrolase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UBP1 PE=1 SV=2 | 153 | 486 | 4.0E-28 |
| sp|Q9FPS0|UBP27_ARATH | Ubiquitin carboxyl-terminal hydrolase 27 OS=Arabidopsis thaliana GN=UBP27 PE=2 SV=1 | 154 | 551 | 4.0E-17 |
| sp|A2BGT0|UBP30_DANRE | Ubiquitin carboxyl-terminal hydrolase 30 OS=Danio rerio GN=usp30 PE=3 SV=1 | 154 | 644 | 7.0E-14 |
| sp|P0CAQ1|UBP16_EMENI | Ubiquitin carboxyl-terminal hydrolase 16 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ubp16 PE=3 SV=1 | 154 | 572 | 1.0E-13 |
| sp|D3ZPG5|UBP30_RAT | Ubiquitin carboxyl-terminal hydrolase 30 OS=Rattus norvegicus GN=Usp30 PE=3 SV=1 | 154 | 370 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004843 | cysteine-type deubiquitinase activity | Yes |
| GO:0016579 | protein deubiquitination | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0070647 | protein modification by small protein conjugation or removal | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0019538 | protein metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0070646 | protein modification by small protein removal | No |
| GO:0008152 | metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0016787 | hydrolase activity | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008234 | cysteine-type peptidase activity | No |
| GO:0036211 | protein modification process | No |
| GO:0003674 | molecular_function | No |
| GO:0019783 | ubiquitin-like protein peptidase activity | No |
| GO:0008233 | peptidase activity | No |
| GO:0006508 | proteolysis | No |
| GO:0101005 | deubiquitinase activity | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 32 | 54 | 22 |
| 2 | 61 | 83 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 4143 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|2632 MSRPQGELGSFYEAQITARRHSLPHDRPSAPWSEAGVIVPILALLVPLLLKLYASQAAFANIAGRIIGLLGDLAT FILPARLLFAIDARMNPSRSPDGQASHLHHGAKKDALRRILGLNQAQGLMESVFQARNRALSVTGGMLGLKPEAQ RPAGLGNLDNSCYQNSILQGLAALESFPDYLEACARTVEASQASNKEVAQTLATLIDDLNDLSNNNRTIWTPRLL KSMSTWTQQDAQEYFSKILEDIDKSVADRVKETQPHPGIGVECYKDDAVASLHSDDSGYQSLSWHTDLSPLEGLR NPLEGMLAQRVACVQCGHSEGLSMIPFNCLTLSLGLDKNQHDLYDRLDAFTRVETIEGVECAKCTLLKAQKLLGK LLDKMRQGTAGPGLGQEQLGEARRRLEAVEEALEEDLFDDKTLLGKCKITAQSKMSSAKTKQIVVARPPRSLVIH INRSVFDPATFDMMKNSAPVCFPLTFDLGSWCLGSNSRRTSQGAERRGESGGEQELWQLDAKTSMISSDEQRSRL TGPLYELRAVVTHAGRHENGHYICYRRYPKQKTRGHCGSAAWKRLGSPGQESGDEQDQSNVVTQMGEASDVGVEE KAQWWRLSDDNVCEVDEEIVQRQASGVFMLFYECVERDMVLSEEGGEDADYAEEEKEEEXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXNGEGFKAACLLCLVAFGKERQP* |
| Coding | >OphauG2|2632 ATGAGTCGGCCACAGGGCGAGCTTGGAAGCTTTTATGAGGCTCAAATCACGGCTCGTCGCCATTCGTTGCCGCAC GACCGCCCATCGGCTCCGTGGAGCGAAGCTGGTGTCATTGTTCCCATTCTCGCATTGCTAGTCCCACTTCTCTTG AAGCTGTACGCCTCCCAAGCAGCGTTTGCCAACATCGCGGGTCGGATAATTGGCCTGCTCGGCGACTTGGCGACC TTTATTTTACCAGCAAGACTGTTATTTGCCATTGACGCTCGGATGAATCCCTCGCGCTCGCCCGACGGACAAGCT TCGCATCTGCACCATGGCGCCAAAAAGGACGCACTGAGGAGAATTCTCGGCTTGAACCAGGCCCAAGGCTTGATG GAGTCGGTCTTTCAGGCTCGCAATCGAGCGCTTTCGGTGACGGGGGGCATGCTGGGCTTGAAGCCCGAAGCCCAG CGTCCTGCTGGTCTCGGCAACCTGGACAATTCGTGCTATCAAAACAGCATTTTACAGGGCCTGGCTGCCCTTGAG TCCTTTCCAGACTACCTCGAAGCGTGTGCAAGAACGGTTGAAGCAAGCCAGGCGTCGAACAAGGAGGTTGCCCAG ACACTAGCCACCTTGATTGATGATTTGAACGACTTGTCAAACAATAACAGGACCATATGGACACCCAGACTTCTC AAGTCGATGAGTACATGGACACAGCAGGATGCACAAGAGTACTTCTCCAAGATTCTCGAAGACATTGACAAGAGC GTGGCCGATAGGGTCAAGGAGACGCAACCGCATCCAGGAATAGGGGTAGAGTGCTACAAGGATGACGCCGTGGCC AGCCTACACAGCGATGACAGCGGATACCAAAGTTTGTCGTGGCATACAGATCTCTCGCCGCTCGAAGGATTACGC AATCCGCTCGAGGGCATGCTGGCGCAACGAGTAGCATGTGTGCAGTGTGGCCACTCGGAAGGACTGTCCATGATT CCCTTCAACTGCCTCACGTTGAGTCTGGGCCTGGACAAGAATCAACACGACTTGTATGACCGGCTAGATGCCTTT ACGCGAGTCGAGACGATTGAAGGGGTTGAATGTGCCAAGTGCACCTTGCTCAAGGCACAAAAGCTCCTGGGCAAA CTGCTTGACAAGATGCGGCAAGGGACGGCAGGGCCAGGTCTGGGACAAGAGCAGCTGGGCGAAGCGCGACGTCGA CTCGAAGCTGTCGAGGAAGCGCTTGAGGAAGACTTGTTTGATGATAAGACACTGTTGGGCAAGTGCAAAATCACA GCGCAAAGCAAAATGAGTTCAGCCAAGACGAAACAGATTGTGGTTGCTCGGCCCCCGCGAAGCTTGGTGATTCAC ATCAACCGGTCTGTGTTTGACCCGGCCACATTTGACATGATGAAAAACTCGGCTCCCGTTTGCTTTCCACTCACC TTTGATCTGGGGTCTTGGTGTCTGGGTAGCAACTCTAGGCGTACCAGCCAGGGTGCTGAGAGAAGGGGAGAGAGC GGTGGTGAGCAGGAACTGTGGCAATTGGATGCAAAGACATCAATGATATCGAGTGACGAGCAACGGTCTCGGCTT ACGGGACCTTTGTATGAGCTACGAGCAGTGGTGACGCATGCCGGAAGACATGAAAACGGGCATTATATATGCTAT CGAAGATACCCGAAACAAAAAACAAGGGGACATTGTGGAAGCGCGGCATGGAAAAGACTTGGGTCTCCTGGTCAG GAAAGTGGTGATGAGCAAGACCAGAGTAATGTGGTGACGCAGATGGGAGAAGCAAGCGACGTGGGGGTGGAGGAA AAGGCGCAGTGGTGGAGGTTGAGCGACGACAACGTTTGCGAGGTGGACGAGGAAATAGTACAGAGGCAGGCATCG GGAGTCTTTATGTTATTTTACGAGTGTGTTGAGCGCGACATGGTACTGAGCGAGGAGGGCGGTGAGGACGCTGAT TATGCTGAGGAGGAGAAGGAGGAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGGAGAAGGGTTCAAGGCG GCTTGCTTGCTTTGTTTGGTTGCTTTTGGAAAGGAAAGACAGCCATGA |
| Transcript | >OphauG2|2632 ATGAGTCGGCCACAGGGCGAGCTTGGAAGCTTTTATGAGGCTCAAATCACGGCTCGTCGCCATTCGTTGCCGCAC GACCGCCCATCGGCTCCGTGGAGCGAAGCTGGTGTCATTGTTCCCATTCTCGCATTGCTAGTCCCACTTCTCTTG AAGCTGTACGCCTCCCAAGCAGCGTTTGCCAACATCGCGGGTCGGATAATTGGCCTGCTCGGCGACTTGGCGACC TTTATTTTACCAGCAAGACTGTTATTTGCCATTGACGCTCGGATGAATCCCTCGCGCTCGCCCGACGGACAAGCT TCGCATCTGCACCATGGCGCCAAAAAGGACGCACTGAGGAGAATTCTCGGCTTGAACCAGGCCCAAGGCTTGATG GAGTCGGTCTTTCAGGCTCGCAATCGAGCGCTTTCGGTGACGGGGGGCATGCTGGGCTTGAAGCCCGAAGCCCAG CGTCCTGCTGGTCTCGGCAACCTGGACAATTCGTGCTATCAAAACAGCATTTTACAGGGCCTGGCTGCCCTTGAG TCCTTTCCAGACTACCTCGAAGCGTGTGCAAGAACGGTTGAAGCAAGCCAGGCGTCGAACAAGGAGGTTGCCCAG ACACTAGCCACCTTGATTGATGATTTGAACGACTTGTCAAACAATAACAGGACCATATGGACACCCAGACTTCTC AAGTCGATGAGTACATGGACACAGCAGGATGCACAAGAGTACTTCTCCAAGATTCTCGAAGACATTGACAAGAGC GTGGCCGATAGGGTCAAGGAGACGCAACCGCATCCAGGAATAGGGGTAGAGTGCTACAAGGATGACGCCGTGGCC AGCCTACACAGCGATGACAGCGGATACCAAAGTTTGTCGTGGCATACAGATCTCTCGCCGCTCGAAGGATTACGC AATCCGCTCGAGGGCATGCTGGCGCAACGAGTAGCATGTGTGCAGTGTGGCCACTCGGAAGGACTGTCCATGATT CCCTTCAACTGCCTCACGTTGAGTCTGGGCCTGGACAAGAATCAACACGACTTGTATGACCGGCTAGATGCCTTT ACGCGAGTCGAGACGATTGAAGGGGTTGAATGTGCCAAGTGCACCTTGCTCAAGGCACAAAAGCTCCTGGGCAAA CTGCTTGACAAGATGCGGCAAGGGACGGCAGGGCCAGGTCTGGGACAAGAGCAGCTGGGCGAAGCGCGACGTCGA CTCGAAGCTGTCGAGGAAGCGCTTGAGGAAGACTTGTTTGATGATAAGACACTGTTGGGCAAGTGCAAAATCACA GCGCAAAGCAAAATGAGTTCAGCCAAGACGAAACAGATTGTGGTTGCTCGGCCCCCGCGAAGCTTGGTGATTCAC ATCAACCGGTCTGTGTTTGACCCGGCCACATTTGACATGATGAAAAACTCGGCTCCCGTTTGCTTTCCACTCACC TTTGATCTGGGGTCTTGGTGTCTGGGTAGCAACTCTAGGCGTACCAGCCAGGGTGCTGAGAGAAGGGGAGAGAGC GGTGGTGAGCAGGAACTGTGGCAATTGGATGCAAAGACATCAATGATATCGAGTGACGAGCAACGGTCTCGGCTT ACGGGACCTTTGTATGAGCTACGAGCAGTGGTGACGCATGCCGGAAGACATGAAAACGGGCATTATATATGCTAT CGAAGATACCCGAAACAAAAAACAAGGGGACATTGTGGAAGCGCGGCATGGAAAAGACTTGGGTCTCCTGGTCAG GAAAGTGGTGATGAGCAAGACCAGAGTAATGTGGTGACGCAGATGGGAGAAGCAAGCGACGTGGGGGTGGAGGAA AAGGCGCAGTGGTGGAGGTTGAGCGACGACAACGTTTGCGAGGTGGACGAGGAAATAGTACAGAGGCAGGCATCG GGAGTCTTTATGTTATTTTACGAGTGTGTTGAGCGCGACATGGTACTGAGCGAGGAGGGCGGTGAGGACGCTGAT TATGCTGAGGAGGAGAAGGAGGAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGGAGAAGGGTTCAAGGCG GCTTGCTTGCTTTGTTTGGTTGCTTTTGGAAAGGAAAGACAGCCATGA |
| Gene | >OphauG2|2632 ATGAGTCGGCCACAGGGCGAGCTTGGAAGCTTTTATGAGGCTCAAATCACGGCTCGTCGCCATTCGTTGCCGCAC GACCGCCCATCGGCTCCGTGGAGCGAAGCTGGTGTCATTGTTCCCATTCTCGCATTGCTAGTCCCACTTCTCTTG AAGCTGTACGCCTCCCAAGCAGCGTTTGCCAACATCGCGGGTCGGATAATTGGCCTGCTCGGCGACTTGGCGACC TTTATTTTACCAGCAAGACTGTTATTTGCCATTGACGCTCGGATGAATCCCTCGCGCTCGCCCGACGGACAAGCT TCGCATCTGCACCATGGCGCCAAAAAGGACGCACTGAGGAGAATTCTCGGCTTGAACCAGGCCCAAGGCTTGATG GAGTCGGTCTTTCAGGCTCGCAATCGAGCGCTTTCGGTGACGGGGGGCATGCTGGGCTTGAAGCCCGAAGCCCAG CGTCCTGCTGGTCTCGGCAACCTGGACAATTCGTGCTATCAAAACAGCATTTTACAGGGCCTGGCTGCCCTTGAG TCCTTTCCAGACTACCTCGAAGCGTGTGCAAGAACGGTTGAAGCAAGCCAGGCGTCGAACAAGGAGGTTGCCCAG ACACTAGCCACCTTGATTGATGATTTGAACGACTTGTCAAACAATAACAGGACCATATGGACACCCAGACTTCTC AAGTCGATGAGTACATGGACACAGCAGGATGCACAAGAGTACTTCTCCAAGATTCTCGAAGACATTGACAAGAGC GTGGCCGATAGGGTCAAGGAGACGCAACCGCATCCAGGAATAGGGGTAGAGTGCTACAAGGATGACGCCGTGGCC AGCCTACACAGCGATGACAGCGGATACCAAAGTTTGTCGTGGCATACAGATCTCTCGCCGCTCGAAGGATTACGC AATCCGCTCGAGGGCATGCTGGCGCAACGAGTAGCATGTGTGCAGTGTGGCCACTCGGAAGGACTGTCCATGATT CCCTTCAACTGCCTCACGTTGAGTCTGGGCCTGGACAAGAATCAACACGACTTGTATGACCGGCTAGATGCCTTT ACGCGAGTCGAGACGATTGAAGGGGTTGAATGTGCCAAGTGCACCTTGCTCAAGGCACAAAAGCTCCTGGGCAAA CTGCTTGACAAGATGCGGCAAGGGACGGCAGGGCCAGGTCTGGGACAAGAGCAGCTGGGCGAAGCGCGACGTCGA CTCGAAGCTGTCGAGGAAGCGCTTGAGGAAGACTTGTTTGATGATAAGACACTGTTGGGCAAGTGCAAAATCACA GCGCAAAGCAAAATGAGTTCAGCCAAGACGAAACAGATTGTGGTTGCTCGGCCCCCGCGAAGCTTGGTGATTCAC ATCAACCGGTCTGTGTTTGACCCGGCCACATTTGACATGATGAAAAACTCGGCTCCCGTTTGCTTTCCACTCACC TTTGATCTGGGGTCTTGGTGTCTGGGTAGCAACTCTAGGCGTACCAGCCAGGGTGCTGAGAGAAGGGGAGAGAGC GGTGGTGAGCAGGAACTGTGGCAATTGGATGCAAAGACATCAATGATATCGAGTGACGAGCAACGGTCTCGGCTT ACGGGACCTTTGTATGAGCTACGAGCAGTGGTGACGCATGCCGGAAGACATGAAAACGGGCATTATATATGCTAT CGAAGATACCCGAAACAAAAAACAAGGGGACATTGTGGAAGCGCGGCATGGAAAAGACTTGGGTCTCCTGGTCAG GAAAGTGGTGATGAGCAAGACCAGAGTAATGTGGTGACGCAGATGGGAGAAGCAAGCGACGTGGGGGTGGAGGAA AAGGCGCAGTGGTGGAGGTTGAGCGACGACAACGTTTGCGAGGTGGACGAGGAAATAGTACAGAGGCAGGCATCG GGAGTCTTTATGTTATTTTACGAGTGTGTTGAGCGCGACATGGTACTGAGCGAGGAGGGCGGTGAGGACGCTGAT TATGCTGAGGAGGAGAAGGAGGAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGGAGAAGGGTTCAAGGCG GCTTGCTTGCTTTGTTTGGTTGCTTTTGGAAAGGAAAGACAGCCATGA |