Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|2482
Gene name
LocationContig_190:17905..18535
Strand-
Gene length (bp)630
Transcript length (bp)492
Coding sequence length (bp)492
Protein length (aa) 164

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05328 CybS CybS, succinate dehydrogenase cytochrome B small subunit 3.1E-52 32 162

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q7SGY6|DHSD_NEUCR Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B18P24.060 PE=3 SV=1 3 163 2.0E-62
sp|Q9P7X0|DHSD_SCHPO Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sdh4 PE=2 SV=2 28 163 7.0E-44
sp|Q750S6|DHSD_ASHGO Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SDH4 PE=3 SV=1 19 161 9.0E-28
sp|Q06236|SHH4_YEAST Mitochondrial inner membrane protein SHH4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHH4 PE=1 SV=1 18 161 4.0E-23
sp|Q08749|TIM18_YEAST Mitochondrial import inner membrane translocase subunit TIM18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIM18 PE=1 SV=2 54 162 5.0E-21
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Swissprot ID Swissprot Description Start End E-value
sp|Q7SGY6|DHSD_NEUCR Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B18P24.060 PE=3 SV=1 3 163 2.0E-62
sp|Q9P7X0|DHSD_SCHPO Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sdh4 PE=2 SV=2 28 163 7.0E-44
sp|Q750S6|DHSD_ASHGO Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SDH4 PE=3 SV=1 19 161 9.0E-28
sp|Q06236|SHH4_YEAST Mitochondrial inner membrane protein SHH4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHH4 PE=1 SV=1 18 161 4.0E-23
sp|Q08749|TIM18_YEAST Mitochondrial import inner membrane translocase subunit TIM18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIM18 PE=1 SV=2 54 162 5.0E-21
sp|P37298|DHSD_YEAST Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDH4 PE=1 SV=1 15 163 3.0E-16
sp|Q6PCT8|DHSD_RAT Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Rattus norvegicus GN=Sdhd PE=2 SV=1 51 162 1.0E-10
sp|Q9CXV1|DHSD_MOUSE Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Mus musculus GN=Sdhd PE=1 SV=2 62 162 7.0E-10
sp|Q6DGM2|DHSDA_DANRE Succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial OS=Danio rerio GN=sdhda PE=2 SV=1 59 162 9.0E-10
sp|Q9VCI5|DHSD_DROME Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Drosophila melanogaster GN=SdhD PE=2 SV=1 61 161 1.0E-09
sp|A5GZW8|DHSD_PIG Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Sus scrofa GN=SDHD PE=1 SV=2 51 162 1.0E-09
sp|Q6P355|DHSD_XENTR Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Xenopus tropicalis GN=sdhd PE=2 SV=1 3 162 3.0E-09
sp|Q5G2C6|DHSD_SHEEP Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Ovis aries GN=SDHD PE=2 SV=1 62 162 1.0E-08
sp|Q6AZV0|DHSDB_XENLA Succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial OS=Xenopus laevis GN=sdhd-b PE=2 SV=1 3 162 1.0E-08
sp|Q68FN7|DHSDB_DANRE Succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial OS=Danio rerio GN=sdhdb PE=2 SV=1 64 162 1.0E-08
sp|Q95123|DHSD_BOVIN Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Bos taurus GN=SDHD PE=2 SV=2 62 162 1.0E-08
sp|A8WT26|DHSD_CAEBR Putative succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Caenorhabditis briggsae GN=sdhd-1 PE=3 SV=1 62 162 3.0E-08
sp|O14521|DHSD_HUMAN Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Homo sapiens GN=SDHD PE=1 SV=1 62 162 1.0E-07
sp|Q6AZR3|DHSDA_XENLA Succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial OS=Xenopus laevis GN=sdhd-a PE=2 SV=1 28 162 3.0E-07
sp|O62215|DHSD_CAEEL Putative succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Caenorhabditis elegans GN=sdhd-1 PE=3 SV=1 62 162 4.0E-07
sp|Q5RC29|DHSD_PONAB Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Pongo abelii GN=SDHD PE=2 SV=1 62 162 6.0E-07
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

Domain # Start End Length
1 127 144 17

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|2482
MASTLLRPTTFASRLVCRPVWRTAALHSSSKRAAILPPGPQIIQGGVNDPTPIPQPSPVHGSYHWTFERLLAAGL
VPLTIAPFAAGSLNPTMDAVLCSVLLLHSHMGFQQVIIDYIPKRRYPGLRKLFWWGLNAATVTVGIGMYEFETND
VGLTEAIKKIWKA*
Coding >OphauG2|2482
ATGGCATCAACTCTGCTACGACCAACGACTTTTGCCTCGCGGCTTGTCTGTCGGCCTGTGTGGCGAACTGCCGCT
CTGCACAGCTCCAGCAAGCGCGCCGCCATTCTGCCGCCGGGACCCCAGATAATTCAGGGTGGAGTCAATGATCCC
ACTCCCATTCCCCAGCCCAGTCCTGTCCACGGCTCCTACCACTGGACATTTGAACGCCTCCTTGCCGCCGGCCTG
GTTCCCTTGACCATTGCTCCATTTGCAGCGGGCTCTCTCAACCCCACGATGGATGCCGTCTTGTGTTCGGTACTC
TTGCTGCACTCTCACATGGGATTTCAGCAGGTCATAATTGATTACATCCCAAAGAGGAGATATCCTGGATTGCGC
AAGCTGTTTTGGTGGGGCCTGAATGCCGCCACAGTCACTGTTGGCATTGGCATGTACGAGTTTGAGACGAATGAT
GTTGGCCTTACAGAAGCCATTAAGAAAATATGGAAGGCATGA
Transcript >OphauG2|2482
ATGGCATCAACTCTGCTACGACCAACGACTTTTGCCTCGCGGCTTGTCTGTCGGCCTGTGTGGCGAACTGCCGCT
CTGCACAGCTCCAGCAAGCGCGCCGCCATTCTGCCGCCGGGACCCCAGATAATTCAGGGTGGAGTCAATGATCCC
ACTCCCATTCCCCAGCCCAGTCCTGTCCACGGCTCCTACCACTGGACATTTGAACGCCTCCTTGCCGCCGGCCTG
GTTCCCTTGACCATTGCTCCATTTGCAGCGGGCTCTCTCAACCCCACGATGGATGCCGTCTTGTGTTCGGTACTC
TTGCTGCACTCTCACATGGGATTTCAGCAGGTCATAATTGATTACATCCCAAAGAGGAGATATCCTGGATTGCGC
AAGCTGTTTTGGTGGGGCCTGAATGCCGCCACAGTCACTGTTGGCATTGGCATGTACGAGTTTGAGACGAATGAT
GTTGGCCTTACAGAAGCCATTAAGAAAATATGGAAGGCATGA
Gene >OphauG2|2482
ATGGCATCAACTCTGCTACGACCAACGACTTTTGCCTCGCGGCTTGTCTGTCGGCCTGTGTGGCGAACTGCCGCT
CTGCACAGCTCCAGCAAGCGCGCCGCCATTCTGCCGCCGGGACCCCGTGAGCACCCCTGGTGATTAATGCATCGT
TGCAACAGTGACTAACTTGCAATGCCAACAGAGATAATTCAGGGTGGAGGTACCAAGCAGCTTTAAACATGACCA
TGCAAGCCACGCTCTCTGTTTGAATCCCCCGCTGACTCTTGCTTGCATCCAGTCAATGATCCCACTCCCATTCCC
CAGCCCAGTCCTGTCCACGGCTCCTACCACTGGACATTTGAACGCCTCCTTGCCGCCGGCCTGGTTCCCTTGACC
ATTGCTCCATTTGCAGCGGGCTCTCTCAACCCCACGATGGATGCCGTCTTGTGTTCGGTACTCTTGCTGCACTCT
CACATGGGATTTCAGCAGGTCATAATTGATTACATCCCAAAGAGGAGATATCCTGGATTGCGCAAGCTGTTTTGG
TGGGGCCTGAATGCCGCCACAGTCACTGTTGGCATTGGCATGTACGAGTTTGAGACGAATGATGTTGGCCTTACA
GAAGCCATTAAGAAAATATGGAAGGCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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