© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|2469 |
| Gene name | |
| Location | Contig_19:36818..37613 |
| Strand | - |
| Gene length (bp) | 795 |
| Transcript length (bp) | 795 |
| Coding sequence length (bp) | 795 |
| Protein length (aa) | 265 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00642 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 2.3E-04 | 89 | 108 |
| PF00642 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 2.7E-08 | 114 | 138 |
| PF14608 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger | 3.9E+00 | 54 | 69 |
| PF14608 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger | 5.7E-01 | 90 | 108 |
| PF14608 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger | 3.5E-02 | 118 | 137 |
| PF14608 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger | 3.5E+00 | 146 | 165 |
| PF14608 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger | 1.2E+00 | 171 | 186 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4IPA4|YTH1_GIBZE | mRNA 3'-end-processing protein YTH1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=YTH1 PE=3 SV=2 | 14 | 217 | 2.0E-121 |
| sp|Q7SGR2|YTH1_NEUCR | mRNA 3'-end-processing protein yth-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=yth-1 PE=3 SV=1 | 6 | 208 | 7.0E-90 |
| sp|Q5BGN2|YTH1_EMENI | mRNA 3'-end-processing protein yth1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=yth1 PE=3 SV=1 | 23 | 203 | 5.0E-69 |
| sp|Q4WKD9|YTH1_ASPFU | mRNA 3'-end-processing protein yth1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=yth1 PE=3 SV=1 | 11 | 203 | 2.0E-67 |
| sp|Q2URI6|YTH1_ASPOR | mRNA 3'-end-processing protein yth1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=yth1 PE=3 SV=1 | 19 | 205 | 2.0E-66 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q4IPA4|YTH1_GIBZE | mRNA 3'-end-processing protein YTH1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=YTH1 PE=3 SV=2 | 14 | 217 | 2.0E-121 |
| sp|Q7SGR2|YTH1_NEUCR | mRNA 3'-end-processing protein yth-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=yth-1 PE=3 SV=1 | 6 | 208 | 7.0E-90 |
| sp|Q5BGN2|YTH1_EMENI | mRNA 3'-end-processing protein yth1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=yth1 PE=3 SV=1 | 23 | 203 | 5.0E-69 |
| sp|Q4WKD9|YTH1_ASPFU | mRNA 3'-end-processing protein yth1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=yth1 PE=3 SV=1 | 11 | 203 | 2.0E-67 |
| sp|Q2URI6|YTH1_ASPOR | mRNA 3'-end-processing protein yth1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=yth1 PE=3 SV=1 | 19 | 205 | 2.0E-66 |
| sp|Q59T36|YTH1_CANAL | mRNA 3'-end-processing protein YTH1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YTH1 PE=3 SV=1 | 17 | 238 | 1.0E-61 |
| sp|Q6BTT1|YTH1_DEBHA | mRNA 3'-end-processing protein YTH1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YTH1 PE=3 SV=2 | 33 | 228 | 9.0E-61 |
| sp|Q6C922|YTH1_YARLI | mRNA 3'-end-processing protein YTH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YTH1 PE=3 SV=1 | 33 | 225 | 8.0E-58 |
| sp|Q6CKU1|YTH1_KLULA | mRNA 3'-end-processing protein YTH1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=YTH1 PE=3 SV=1 | 23 | 235 | 2.0E-57 |
| sp|Q758T3|YTH1_ASHGO | mRNA 3'-end-processing protein YTH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YTH1 PE=3 SV=1 | 23 | 227 | 5.0E-56 |
| sp|Q6FTL0|YTH1_CANGA | mRNA 3'-end-processing protein YTH1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YTH1 PE=3 SV=1 | 23 | 220 | 6.0E-56 |
| sp|Q06102|YTH1_YEAST | mRNA 3'-end-processing protein YTH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YTH1 PE=1 SV=1 | 23 | 207 | 9.0E-53 |
| sp|Q4P384|YTH1_USTMA | mRNA 3'-end-processing protein YTH1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=YTH1 PE=3 SV=1 | 5 | 242 | 3.0E-44 |
| sp|Q9UTD1|YTH1_SCHPO | mRNA 3'-end-processing protein yth1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yth1 PE=3 SV=1 | 73 | 205 | 9.0E-44 |
| sp|O95639|CPSF4_HUMAN | Cleavage and polyadenylation specificity factor subunit 4 OS=Homo sapiens GN=CPSF4 PE=1 SV=1 | 53 | 193 | 5.0E-43 |
| sp|O19137|CPSF4_BOVIN | Cleavage and polyadenylation specificity factor subunit 4 OS=Bos taurus GN=CPSF4 PE=1 SV=1 | 53 | 193 | 6.0E-43 |
| sp|Q5FVR7|CPSF4_RAT | Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus norvegicus GN=Cpsf4 PE=2 SV=1 | 53 | 193 | 7.0E-43 |
| sp|Q66KE3|CPSF4_XENTR | Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus tropicalis GN=cpsf4 PE=2 SV=1 | 53 | 193 | 1.0E-41 |
| sp|Q6DJP7|CPSF4_XENLA | Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus laevis GN=cpsf4 PE=2 SV=1 | 53 | 193 | 2.0E-41 |
| sp|A6NMK7|CPS4L_HUMAN | Putative cleavage and polyadenylation specificity factor subunit 4-like protein OS=Homo sapiens GN=CPSF4L PE=2 SV=3 | 53 | 197 | 1.0E-38 |
| sp|Q9VPT8|CPSF4_DROME | Cleavage and polyadenylation specificity factor subunit 4 OS=Drosophila melanogaster GN=Clp PE=1 SV=1 | 62 | 186 | 2.0E-36 |
| sp|P0CS64|YTH1_CRYNJ | mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=YTH1 PE=3 SV=1 | 4 | 191 | 3.0E-32 |
| sp|P0CS65|YTH1_CRYNB | mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=YTH1 PE=3 SV=1 | 4 | 191 | 3.0E-32 |
| sp|Q8BQZ5|CPSF4_MOUSE | Cleavage and polyadenylation specificity factor subunit 4 OS=Mus musculus GN=Cpsf4 PE=2 SV=1 | 53 | 193 | 3.0E-25 |
| sp|Q0DA50|C3H45_ORYSJ | Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=3 SV=1 | 89 | 167 | 1.0E-15 |
| sp|A9LNK9|CPSF_ARATH | 30-kDa cleavage and polyadenylation specificity factor 30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1 | 89 | 167 | 9.0E-15 |
| sp|Q8CHP0|ZC3H3_MOUSE | Zinc finger CCCH domain-containing protein 3 OS=Mus musculus GN=Zc3h3 PE=1 SV=1 | 89 | 187 | 9.0E-13 |
| sp|Q8IXZ2|ZC3H3_HUMAN | Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens GN=ZC3H3 PE=1 SV=3 | 60 | 187 | 1.0E-12 |
| sp|O74823|YBJC_SCHPO | Zinc finger CCCH domain-containing protein C337.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC337.12 PE=3 SV=3 | 44 | 187 | 4.0E-09 |
| sp|Q3ED78|C3H7_ARATH | Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis thaliana GN=At1g21570 PE=1 SV=1 | 89 | 192 | 4.0E-09 |
| sp|Q9VSK8|ZC3H3_DROME | Zinc finger CCCH domain-containing protein 3 OS=Drosophila melanogaster GN=ZC3H3 PE=1 SV=2 | 89 | 216 | 5.0E-09 |
| sp|Q657B3|C3H7_ORYSJ | Zinc finger CCCH domain-containing protein 7 OS=Oryza sativa subsp. japonica GN=Os01g0572100 PE=2 SV=1 | 53 | 174 | 3.0E-08 |
| sp|Q8BYK8|ZC3H6_MOUSE | Zinc finger CCCH domain-containing protein 6 OS=Mus musculus GN=Zc3h6 PE=2 SV=2 | 89 | 139 | 4.0E-08 |
| sp|Q8N5P1|ZC3H8_HUMAN | Zinc finger CCCH domain-containing protein 8 OS=Homo sapiens GN=ZC3H8 PE=1 SV=2 | 89 | 166 | 1.0E-07 |
| sp|P61129|ZC3H6_HUMAN | Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens GN=ZC3H6 PE=2 SV=2 | 89 | 137 | 1.0E-07 |
| sp|Q9JJ48|ZC3H8_MOUSE | Zinc finger CCCH domain-containing protein 8 OS=Mus musculus GN=Zc3h8 PE=1 SV=2 | 89 | 166 | 2.0E-07 |
| sp|Q9UPT8|ZC3H4_HUMAN | Zinc finger CCCH domain-containing protein 4 OS=Homo sapiens GN=ZC3H4 PE=1 SV=3 | 88 | 139 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| Orthofinder run ID | 4 |
| Orthogroup | 6400 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|2469 MEAISTSSTSTALAKETLASAILGHSAPQLYNFRFSPFLRKAHQVGLAADRPTCRAFQTGNCPNGTRCAERHVSD GKATQPTGGLNSLVCKHWLRGLCKKGEHCEFLHEYNLRKMPECNFFMRNGYCSNGEECLYLHVDPLSRLPPCPHY DMGFCPLGPLCSKKHVRRKLCVFYLAGFCPDGPDCKLGSHPKWLKDLEKPTVKSDDKEEDGLRSDLAAQRTEEDG DRGRDNHRDREDGGRFGRHSRGGAGKWRGGRDRRFRNRH* |
| Coding | >OphauG2|2469 ATGGAGGCGATTTCTACATCAAGCACATCCACGGCCCTCGCCAAAGAAACACTCGCGTCGGCCATCCTGGGACAC TCGGCACCACAGCTCTACAACTTTCGCTTCTCTCCCTTTCTCCGAAAAGCCCATCAGGTTGGGCTGGCGGCAGAC CGGCCGACATGTCGAGCCTTCCAGACGGGCAATTGTCCCAACGGCACGCGCTGCGCTGAGCGGCACGTGTCGGAT GGCAAAGCGACCCAGCCGACCGGAGGACTCAACTCGCTCGTCTGCAAGCACTGGCTTCGCGGCCTGTGCAAAAAG GGCGAACATTGCGAGTTTTTACACGAGTACAACTTGCGGAAAATGCCCGAGTGCAACTTCTTCATGCGCAATGGC TACTGCTCCAACGGCGAGGAGTGTTTATACCTCCATGTCGATCCGCTCTCTCGCTTGCCGCCTTGCCCGCACTAC GACATGGGCTTCTGCCCCCTCGGTCCTCTATGCTCCAAGAAACATGTCCGCCGGAAGCTGTGCGTCTTTTATCTT GCAGGCTTCTGCCCTGATGGGCCAGACTGCAAGCTGGGCTCACATCCCAAATGGTTGAAAGACCTTGAGAAGCCT ACAGTCAAGTCGGATGATAAGGAGGAGGATGGTCTGAGGAGTGATCTTGCAGCCCAACGGACAGAAGAAGACGGT GACCGTGGCAGGGATAACCACAGAGATCGCGAGGACGGTGGCAGATTCGGACGGCATTCAAGAGGAGGCGCTGGA AAGTGGAGGGGAGGCAGAGACAGGCGTTTCAGAAATCGTCACTAG |
| Transcript | >OphauG2|2469 ATGGAGGCGATTTCTACATCAAGCACATCCACGGCCCTCGCCAAAGAAACACTCGCGTCGGCCATCCTGGGACAC TCGGCACCACAGCTCTACAACTTTCGCTTCTCTCCCTTTCTCCGAAAAGCCCATCAGGTTGGGCTGGCGGCAGAC CGGCCGACATGTCGAGCCTTCCAGACGGGCAATTGTCCCAACGGCACGCGCTGCGCTGAGCGGCACGTGTCGGAT GGCAAAGCGACCCAGCCGACCGGAGGACTCAACTCGCTCGTCTGCAAGCACTGGCTTCGCGGCCTGTGCAAAAAG GGCGAACATTGCGAGTTTTTACACGAGTACAACTTGCGGAAAATGCCCGAGTGCAACTTCTTCATGCGCAATGGC TACTGCTCCAACGGCGAGGAGTGTTTATACCTCCATGTCGATCCGCTCTCTCGCTTGCCGCCTTGCCCGCACTAC GACATGGGCTTCTGCCCCCTCGGTCCTCTATGCTCCAAGAAACATGTCCGCCGGAAGCTGTGCGTCTTTTATCTT GCAGGCTTCTGCCCTGATGGGCCAGACTGCAAGCTGGGCTCACATCCCAAATGGTTGAAAGACCTTGAGAAGCCT ACAGTCAAGTCGGATGATAAGGAGGAGGATGGTCTGAGGAGTGATCTTGCAGCCCAACGGACAGAAGAAGACGGT GACCGTGGCAGGGATAACCACAGAGATCGCGAGGACGGTGGCAGATTCGGACGGCATTCAAGAGGAGGCGCTGGA AAGTGGAGGGGAGGCAGAGACAGGCGTTTCAGAAATCGTCACTAG |
| Gene | >OphauG2|2469 ATGGAGGCGATTTCTACATCAAGCACATCCACGGCCCTCGCCAAAGAAACACTCGCGTCGGCCATCCTGGGACAC TCGGCACCACAGCTCTACAACTTTCGCTTCTCTCCCTTTCTCCGAAAAGCCCATCAGGTTGGGCTGGCGGCAGAC CGGCCGACATGTCGAGCCTTCCAGACGGGCAATTGTCCCAACGGCACGCGCTGCGCTGAGCGGCACGTGTCGGAT GGCAAAGCGACCCAGCCGACCGGAGGACTCAACTCGCTCGTCTGCAAGCACTGGCTTCGCGGCCTGTGCAAAAAG GGCGAACATTGCGAGTTTTTACACGAGTACAACTTGCGGAAAATGCCCGAGTGCAACTTCTTCATGCGCAATGGC TACTGCTCCAACGGCGAGGAGTGTTTATACCTCCATGTCGATCCGCTCTCTCGCTTGCCGCCTTGCCCGCACTAC GACATGGGCTTCTGCCCCCTCGGTCCTCTATGCTCCAAGAAACATGTCCGCCGGAAGCTGTGCGTCTTTTATCTT GCAGGCTTCTGCCCTGATGGGCCAGACTGCAAGCTGGGCTCACATCCCAAATGGTTGAAAGACCTTGAGAAGCCT ACAGTCAAGTCGGATGATAAGGAGGAGGATGGTCTGAGGAGTGATCTTGCAGCCCAACGGACAGAAGAAGACGGT GACCGTGGCAGGGATAACCACAGAGATCGCGAGGACGGTGGCAGATTCGGACGGCATTCAAGAGGAGGCGCTGGA AAGTGGAGGGGAGGCAGAGACAGGCGTTTCAGAAATCGTCACTAG |