© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|2412 |
| Gene name | |
| Location | Contig_187:9725..10367 |
| Strand | + |
| Gene length (bp) | 642 |
| Transcript length (bp) | 642 |
| Coding sequence length (bp) | 642 |
| Protein length (aa) | 214 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00520 | Ion_trans | Ion transport protein | 4.2E-06 | 68 | 168 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O60840|CAC1F_HUMAN | Voltage-dependent L-type calcium channel subunit alpha-1F OS=Homo sapiens GN=CACNA1F PE=1 SV=2 | 28 | 135 | 2.0E-07 |
| sp|Q9JIS7|CAC1F_MOUSE | Voltage-dependent L-type calcium channel subunit alpha-1F OS=Mus musculus GN=Cacna1f PE=1 SV=1 | 31 | 135 | 7.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0006811 | ion transport | Yes |
| GO:0005216 | ion channel activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0006810 | transport | No |
| GO:0051179 | localization | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0015267 | channel activity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 65 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 54 | 76 | 22 |
| 2 | 96 | 118 | 22 |
| 3 | 135 | 157 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|2412 MSENSASAAPLLPRPNNHGSRSRSAQPLRLRVLRRARRCRSICQRLLLSRAKHFVVMTLVALDVATLLVNIFIQL IACKMHQNDEPWVLAVSHGLAAAGLVFSCLFLVELIFCLSAFGPGAYLASCFHRFDATIVVLSFFIDVGVSGLAA NIGSLIIVLRLWRLAKLSEEVVLGATERMAMLEQQLEELESENKHLRLQLGMDSHEHSGSGHE* |
| Coding | >OphauG2|2412 ATGTCAGAAAACAGCGCGTCGGCCGCTCCTCTTCTCCCTCGCCCCAACAATCATGGCTCGCGCTCTCGATCGGCT CAGCCGCTGCGTCTTCGCGTCCTCCGCCGCGCCCGAAGATGTCGCTCAATCTGCCAGCGCCTCCTGTTATCGCGG GCCAAGCACTTTGTCGTCATGACCCTCGTCGCCCTGGATGTTGCGACGCTGCTCGTAAACATCTTCATCCAGCTC ATTGCATGCAAGATGCATCAAAACGACGAGCCCTGGGTTCTGGCTGTTTCCCATGGTCTTGCCGCTGCAGGCCTT GTTTTTAGCTGCCTCTTTCTCGTCGAGCTCATTTTCTGCCTCTCAGCCTTTGGGCCCGGCGCCTACTTGGCCTCG TGCTTCCACAGATTCGATGCCACCATTGTCGTTTTGAGCTTCTTCATTGACGTCGGCGTTAGTGGCCTCGCCGCC AATATCGGCTCGCTCATCATTGTCCTTCGACTCTGGCGCCTGGCCAAGCTTTCAGAAGAGGTCGTCCTTGGGGCC ACGGAACGCATGGCAATGCTGGAACAGCAGCTCGAGGAGCTCGAAAGCGAAAACAAACATCTTCGACTCCAACTC GGAATGGATTCACACGAACACTCTGGCTCTGGCCACGAGTAA |
| Transcript | >OphauG2|2412 ATGTCAGAAAACAGCGCGTCGGCCGCTCCTCTTCTCCCTCGCCCCAACAATCATGGCTCGCGCTCTCGATCGGCT CAGCCGCTGCGTCTTCGCGTCCTCCGCCGCGCCCGAAGATGTCGCTCAATCTGCCAGCGCCTCCTGTTATCGCGG GCCAAGCACTTTGTCGTCATGACCCTCGTCGCCCTGGATGTTGCGACGCTGCTCGTAAACATCTTCATCCAGCTC ATTGCATGCAAGATGCATCAAAACGACGAGCCCTGGGTTCTGGCTGTTTCCCATGGTCTTGCCGCTGCAGGCCTT GTTTTTAGCTGCCTCTTTCTCGTCGAGCTCATTTTCTGCCTCTCAGCCTTTGGGCCCGGCGCCTACTTGGCCTCG TGCTTCCACAGATTCGATGCCACCATTGTCGTTTTGAGCTTCTTCATTGACGTCGGCGTTAGTGGCCTCGCCGCC AATATCGGCTCGCTCATCATTGTCCTTCGACTCTGGCGCCTGGCCAAGCTTTCAGAAGAGGTCGTCCTTGGGGCC ACGGAACGCATGGCAATGCTGGAACAGCAGCTCGAGGAGCTCGAAAGCGAAAACAAACATCTTCGACTCCAACTC GGAATGGATTCACACGAACACTCTGGCTCTGGCCACGAGTAA |
| Gene | >OphauG2|2412 ATGTCAGAAAACAGCGCGTCGGCCGCTCCTCTTCTCCCTCGCCCCAACAATCATGGCTCGCGCTCTCGATCGGCT CAGCCGCTGCGTCTTCGCGTCCTCCGCCGCGCCCGAAGATGTCGCTCAATCTGCCAGCGCCTCCTGTTATCGCGG GCCAAGCACTTTGTCGTCATGACCCTCGTCGCCCTGGATGTTGCGACGCTGCTCGTAAACATCTTCATCCAGCTC ATTGCATGCAAGATGCATCAAAACGACGAGCCCTGGGTTCTGGCTGTTTCCCATGGTCTTGCCGCTGCAGGCCTT GTTTTTAGCTGCCTCTTTCTCGTCGAGCTCATTTTCTGCCTCTCAGCCTTTGGGCCCGGCGCCTACTTGGCCTCG TGCTTCCACAGATTCGATGCCACCATTGTCGTTTTGAGCTTCTTCATTGACGTCGGCGTTAGTGGCCTCGCCGCC AATATCGGCTCGCTCATCATTGTCCTTCGACTCTGGCGCCTGGCCAAGCTTTCAGAAGAGGTCGTCCTTGGGGCC ACGGAACGCATGGCAATGCTGGAACAGCAGCTCGAGGAGCTCGAAAGCGAAAACAAACATCTTCGACTCCAACTC GGAATGGATTCACACGAACACTCTGGCTCTGGCCACGAGTAA |