Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|2404
Gene name
LocationContig_1868:778..1549
Strand+
Gene length (bp)771
Transcript length (bp)627
Coding sequence length (bp)627
Protein length (aa) 209

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00642 zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) 5.3E-07 16 38

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP8A3.06 PE=1 SV=2 1 207 1.0E-91
sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2 1 178 3.0E-71
sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1 1 178 5.0E-71
sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=1 SV=4 1 178 6.0E-71
sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3 1 178 6.0E-71
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Swissprot ID Swissprot Description Start End E-value
sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP8A3.06 PE=1 SV=2 1 207 1.0E-91
sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2 1 178 3.0E-71
sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1 1 178 5.0E-71
sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=1 SV=4 1 178 6.0E-71
sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3 1 178 6.0E-71
sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1 1 197 7.0E-70
sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1 SV=1 1 197 7.0E-70
sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2 SV=1 1 178 2.0E-69
sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1 SV=2 1 202 1.0E-67
sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1 1 202 8.0E-67
sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1 1 178 1.0E-66
sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=1 SV=1 1 179 1.0E-65
sp|Q9S709|U2AFA_ARATH Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1 1 179 1.0E-62
sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2 SV=2 12 182 5.0E-34
sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1 SV=2 12 181 8.0E-34
sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=1 SV=1 12 181 8.0E-32
sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis thaliana GN=At1g10320 PE=2 SV=2 9 166 1.0E-31
sp|Q64707|U2AFL_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=1 SV=1 17 192 2.0E-29
sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=Os02g0557500 PE=2 SV=2 12 166 6.0E-29
sp|Q59LX5|TRY2_CANAL Transcriptional regulator of yeast form adherence 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TRY2 PE=2 SV=1 66 189 9.0E-28
sp|Q29350|U2AF1_PIG Splicing factor U2AF 35 kDa subunit (Fragment) OS=Sus scrofa GN=U2AF1 PE=2 SV=3 1 76 3.0E-26
sp|Q59LX5|TRY2_CANAL Transcriptional regulator of yeast form adherence 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TRY2 PE=2 SV=1 16 57 2.0E-13
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GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0003674 molecular_function No
GO:0043169 cation binding No
GO:0005488 binding No
GO:0043167 ion binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|2404
MANFLASIFGTELDKVNCSFYFKIGACRHGDRCSRKHVKPSYSQTILMPNLYQNPSFDPKNKMNPSQLQNHFDAF
YEDIWCELCKYGELEELVVCDNNNDHLIGNVYARFKYEESAQQACDILNSRWYAGRPVYCELSPVTDFREACCRL
NSGDGCVRGGFCNFIHRKNPSSELDRDLMLSTKKWLRIRGRDPRSQSRSPSPAASRRK*
Coding >OphauG2|2404
ATGGCCAATTTCCTCGCCTCCATCTTTGGCACTGAGCTAGACAAGGTCAACTGCTCCTTCTACTTTAAAATTGGG
GCCTGTCGCCACGGGGATCGTTGCTCCCGAAAACATGTCAAGCCCTCCTACAGCCAAACTATCCTCATGCCCAAC
CTCTATCAGAACCCATCCTTTGACCCCAAGAATAAAATGAACCCTAGCCAGCTGCAAAATCACTTTGATGCCTTC
TACGAGGATATTTGGTGTGAGCTTTGCAAGTACGGTGAGCTCGAGGAGCTTGTCGTGTGCGATAATAACAATGAC
CATCTCATTGGCAACGTCTACGCTCGTTTCAAGTACGAGGAATCAGCCCAGCAAGCCTGCGACATTCTCAATAGT
CGTTGGTACGCCGGCCGCCCTGTCTACTGTGAACTCAGTCCCGTCACGGATTTTCGAGAAGCTTGCTGTCGCCTT
AATTCTGGCGATGGCTGTGTTCGTGGTGGCTTTTGCAACTTTATCCACCGAAAAAACCCGAGCTCCGAGCTCGAT
CGCGACCTCATGCTCAGCACAAAAAAGTGGCTCAGAATCCGCGGCCGTGACCCTCGCAGCCAAAGCCGCTCACCC
AGTCCTGCCGCATCGCGCCGCAAATAA
Transcript >OphauG2|2404
ATGGCCAATTTCCTCGCCTCCATCTTTGGCACTGAGCTAGACAAGGTCAACTGCTCCTTCTACTTTAAAATTGGG
GCCTGTCGCCACGGGGATCGTTGCTCCCGAAAACATGTCAAGCCCTCCTACAGCCAAACTATCCTCATGCCCAAC
CTCTATCAGAACCCATCCTTTGACCCCAAGAATAAAATGAACCCTAGCCAGCTGCAAAATCACTTTGATGCCTTC
TACGAGGATATTTGGTGTGAGCTTTGCAAGTACGGTGAGCTCGAGGAGCTTGTCGTGTGCGATAATAACAATGAC
CATCTCATTGGCAACGTCTACGCTCGTTTCAAGTACGAGGAATCAGCCCAGCAAGCCTGCGACATTCTCAATAGT
CGTTGGTACGCCGGCCGCCCTGTCTACTGTGAACTCAGTCCCGTCACGGATTTTCGAGAAGCTTGCTGTCGCCTT
AATTCTGGCGATGGCTGTGTTCGTGGTGGCTTTTGCAACTTTATCCACCGAAAAAACCCGAGCTCCGAGCTCGAT
CGCGACCTCATGCTCAGCACAAAAAAGTGGCTCAGAATCCGCGGCCGTGACCCTCGCAGCCAAAGCCGCTCACCC
AGTCCTGCCGCATCGCGCCGCAAATAA
Gene >OphauG2|2404
ATGGCCAATTTCCTCGCCTCCATCTTTGGCACTGAGCTAGACAAGGTCAACTGCTCCTTCTACTTTGTAAGTGCC
ATCATCATCCACATGGCCCTTTTTTTACTTGTCTTTACTCACTCGTTAGAAAATTGGGGCCTGTCGCCACGGGGA
TCGTTGCTCCCGAAAACATGTCAAGCCCTCCTACAGCCAAACTATCCTCATGCCCAACCTCTATCAGAACCCATC
CTTTGACCCCAAGAATAAAATGAACCCTAGCCAGCTGCAAAATCACTTTGATGCCTTCTACGAGGATATTTGGTG
TGAGCTTTGCAAGTACGGTGAGCTCGAGGAGCTTGTCGTGTGCGATAATAACAATGACCGTGAGCTCTTCCTCTC
AACCATGGTGTTTTTTTTTCTCGGTCGGCTGTTTCAAAAAGGCCTTTTTTCGCTCATTTACCATGCTCAGATCTC
ATTGGCAACGTCTACGCTCGTTTCAAGTACGAGGAATCAGCCCAGCAAGCCTGCGACATTCTCAATAGTCGTTGG
TACGCCGGCCGCCCTGTCTACTGTGAACTCAGTCCCGTCACGGATTTTCGAGAAGCTTGCTGTCGCCTTAATTCT
GGCGATGGCTGTGTTCGTGGTGGCTTTTGCAACTTTATCCACCGAAAAAACCCGAGCTCCGAGCTCGATCGCGAC
CTCATGCTCAGCACAAAAAAGTGGCTCAGAATCCGCGGCCGTGACCCTCGCAGCCAAAGCCGCTCACCCAGTCCT
GCCGCATCGCGCCGCAAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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