© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|2262 |
| Gene name | |
| Location | Contig_1796:195..2039 |
| Strand | + |
| Gene length (bp) | 1844 |
| Transcript length (bp) | 1539 |
| Coding sequence length (bp) | 1539 |
| Protein length (aa) | 513 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00928 | Adap_comp_sub | Adaptor complexes medium subunit family | 5.8E-15 | 274 | 494 |
| PF01217 | Clat_adaptor_s | Clathrin adaptor complex small chain | 1.3E-07 | 8 | 126 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5RA77|COPD_PONAB | Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE=2 SV=1 | 1 | 511 | 5.0E-119 |
| sp|Q66H80|COPD_RAT | Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1 | 1 | 511 | 5.0E-119 |
| sp|P48444|COPD_HUMAN | Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1 | 1 | 511 | 6.0E-119 |
| sp|Q5XJY5|COPD_MOUSE | Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE=1 SV=2 | 1 | 511 | 2.0E-118 |
| sp|P53619|COPD_BOVIN | Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1 SV=1 | 1 | 511 | 3.0E-118 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5RA77|COPD_PONAB | Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE=2 SV=1 | 1 | 511 | 5.0E-119 |
| sp|Q66H80|COPD_RAT | Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1 | 1 | 511 | 5.0E-119 |
| sp|P48444|COPD_HUMAN | Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1 | 1 | 511 | 6.0E-119 |
| sp|Q5XJY5|COPD_MOUSE | Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE=1 SV=2 | 1 | 511 | 2.0E-118 |
| sp|P53619|COPD_BOVIN | Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1 SV=1 | 1 | 511 | 3.0E-118 |
| sp|Q5ZL57|COPD_CHICK | Coatomer subunit delta OS=Gallus gallus GN=ARCN1 PE=2 SV=1 | 1 | 511 | 1.0E-116 |
| sp|Q0DJA0|COPD1_ORYSJ | Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica GN=Os05g0310800 PE=2 SV=1 | 1 | 511 | 2.0E-90 |
| sp|Q0DJ99|COPD2_ORYSJ | Coatomer subunit delta-2 OS=Oryza sativa subsp. japonica GN=Os05g0311000 PE=2 SV=1 | 1 | 511 | 4.0E-90 |
| sp|P43621|COPD_YEAST | Coatomer subunit delta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RET2 PE=1 SV=3 | 1 | 477 | 9.0E-90 |
| sp|O74496|COPD_SCHPO | Coatomer subunit delta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ret2 PE=3 SV=1 | 1 | 236 | 6.0E-89 |
| sp|Q09236|COPD_CAEEL | Probable coatomer subunit delta OS=Caenorhabditis elegans GN=C13B9.3 PE=3 SV=1 | 1 | 511 | 3.0E-88 |
| sp|P49661|COPD3_ORYSJ | Coatomer subunit delta-3 OS=Oryza sativa subsp. japonica GN=Os01g0833700 PE=2 SV=2 | 1 | 511 | 3.0E-85 |
| sp|Q93Y22|COPD_ARATH | Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1 SV=2 | 1 | 511 | 4.0E-79 |
| sp|Q55EZ6|COPD_DICDI | Coatomer subunit delta OS=Dictyostelium discoideum GN=copd PE=3 SV=1 | 1 | 178 | 1.0E-51 |
| sp|Q55EZ6|COPD_DICDI | Coatomer subunit delta OS=Dictyostelium discoideum GN=copd PE=3 SV=1 | 271 | 512 | 5.0E-29 |
| sp|Q0J649|COPD4_ORYSJ | Coatomer subunit delta-4 OS=Oryza sativa subsp. japonica GN=Os08g0368000 PE=2 SV=1 | 218 | 511 | 4.0E-26 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|2262 MVILAASICTRGGKAVLSRQFREMPRSRIEALLASFPKLADSGTQHTTVEQDSVRFVYQPLDELYMVLITNRQSN ILQDIDSLHLFAQVVTSACKSLDEREILKNAYEMLSAFDEMVALGYRENVALSQIKTFLDMESHEERIQDIIARN KELEATEERKRKAKQLEVQRKESARTGRGAVSRTPVYPSYQSASRPSAPDSYDTYEAEKNKTYNKPIAPRGKGMQ LGKKSKTTDMFERVRGDMGPEMEAAPLVTPSSGAAAELAEPRVSSTLDRDAIHVTISENITAKLSREGAVNSLAI SGDLTLRISDPGLTKVKLALEATASHGTQFRTHPNVDRNAFHNSKVIQMSNTARGFPVNNAVGVLRWRASPKTDD VSACPITFTVWINREAGKFNVTVEYELTGGEALRDVSVVVPYSGSEPVVASFDAAYDVSGDTLEWNIGSLDSDNA NGSFEFEANSSDENDFFPMTVRFSKTTPYIKVDVTEVSLLEEKEAVTFSKDIKSHAEHFQIE* |
| Coding | >OphauG2|2262 ATGGTCATTCTTGCAGCTTCGATTTGCACCCGCGGAGGGAAAGCTGTCCTATCCAGACAGTTTCGCGAGATGCCA AGGTCGCGAATAGAAGCCCTTCTCGCATCATTTCCAAAGTTGGCCGACAGTGGCACGCAGCACACGACGGTCGAG CAAGATAGTGTCCGATTCGTCTACCAACCGCTCGACGAGCTTTACATGGTGCTTATCACCAATCGCCAATCCAAT ATTCTGCAAGACATTGATTCACTGCACCTCTTTGCACAAGTCGTGACCAGTGCATGCAAGTCTCTGGATGAGAGG GAAATCCTCAAGAATGCCTACGAAATGCTTAGCGCCTTCGATGAGATGGTTGCTCTGGGCTATCGCGAAAACGTG GCCCTGAGTCAGATCAAGACTTTTCTTGATATGGAAAGCCACGAGGAGCGCATCCAGGACATCATTGCCAGAAAC AAAGAACTCGAGGCCACTGAAGAGCGGAAACGAAAAGCAAAGCAACTCGAGGTGCAACGAAAGGAATCTGCGCGT ACGGGCCGCGGGGCTGTGTCGAGGACACCAGTCTATCCTTCTTACCAGTCTGCCTCGCGACCCAGCGCTCCGGAC TCGTACGACACTTACGAGGCGGAGAAGAACAAGACATATAACAAGCCAATTGCCCCCAGAGGTAAGGGCATGCAG CTGGGCAAGAAATCTAAGACAACGGACATGTTTGAGCGCGTTCGCGGAGATATGGGTCCCGAAATGGAAGCGGCG CCCCTCGTGACGCCCTCTTCCGGAGCGGCCGCTGAGCTGGCTGAGCCACGTGTGTCATCAACACTAGACCGCGAC GCTATTCACGTAACCATTTCTGAGAACATTACTGCAAAACTATCTCGCGAGGGTGCTGTTAATTCGTTGGCTATT AGCGGAGACCTCACCCTACGCATTTCGGACCCTGGGCTGACCAAGGTCAAGCTGGCGCTCGAAGCTACCGCATCT CATGGCACACAATTCCGTACACATCCCAACGTCGATCGCAACGCCTTCCATAATTCCAAGGTGATACAAATGAGT AACACGGCCCGTGGGTTCCCTGTCAACAACGCTGTCGGGGTGCTGCGGTGGAGGGCTTCGCCAAAAACAGATGAC GTGAGCGCCTGCCCGATTACCTTTACAGTTTGGATCAATCGAGAGGCGGGCAAATTCAACGTGACGGTCGAGTAT GAATTAACGGGTGGGGAAGCACTGAGAGACGTTAGCGTTGTAGTGCCATATTCTGGCAGTGAGCCTGTCGTGGCA AGTTTTGACGCTGCCTACGACGTGTCTGGTGACACGCTCGAGTGGAATATCGGGTCGTTGGACAGTGACAATGCC AACGGCTCATTCGAGTTTGAAGCAAACAGCAGTGACGAGAACGACTTTTTCCCTATGACTGTGAGGTTCAGCAAG ACAACGCCCTATATTAAGGTTGATGTGACTGAGGTATCGTTGCTAGAAGAGAAAGAAGCGGTGACATTTTCTAAG GATATTAAGTCACATGCAGAACACTTTCAAATTGAGTAA |
| Transcript | >OphauG2|2262 ATGGTCATTCTTGCAGCTTCGATTTGCACCCGCGGAGGGAAAGCTGTCCTATCCAGACAGTTTCGCGAGATGCCA AGGTCGCGAATAGAAGCCCTTCTCGCATCATTTCCAAAGTTGGCCGACAGTGGCACGCAGCACACGACGGTCGAG CAAGATAGTGTCCGATTCGTCTACCAACCGCTCGACGAGCTTTACATGGTGCTTATCACCAATCGCCAATCCAAT ATTCTGCAAGACATTGATTCACTGCACCTCTTTGCACAAGTCGTGACCAGTGCATGCAAGTCTCTGGATGAGAGG GAAATCCTCAAGAATGCCTACGAAATGCTTAGCGCCTTCGATGAGATGGTTGCTCTGGGCTATCGCGAAAACGTG GCCCTGAGTCAGATCAAGACTTTTCTTGATATGGAAAGCCACGAGGAGCGCATCCAGGACATCATTGCCAGAAAC AAAGAACTCGAGGCCACTGAAGAGCGGAAACGAAAAGCAAAGCAACTCGAGGTGCAACGAAAGGAATCTGCGCGT ACGGGCCGCGGGGCTGTGTCGAGGACACCAGTCTATCCTTCTTACCAGTCTGCCTCGCGACCCAGCGCTCCGGAC TCGTACGACACTTACGAGGCGGAGAAGAACAAGACATATAACAAGCCAATTGCCCCCAGAGGTAAGGGCATGCAG CTGGGCAAGAAATCTAAGACAACGGACATGTTTGAGCGCGTTCGCGGAGATATGGGTCCCGAAATGGAAGCGGCG CCCCTCGTGACGCCCTCTTCCGGAGCGGCCGCTGAGCTGGCTGAGCCACGTGTGTCATCAACACTAGACCGCGAC GCTATTCACGTAACCATTTCTGAGAACATTACTGCAAAACTATCTCGCGAGGGTGCTGTTAATTCGTTGGCTATT AGCGGAGACCTCACCCTACGCATTTCGGACCCTGGGCTGACCAAGGTCAAGCTGGCGCTCGAAGCTACCGCATCT CATGGCACACAATTCCGTACACATCCCAACGTCGATCGCAACGCCTTCCATAATTCCAAGGTGATACAAATGAGT AACACGGCCCGTGGGTTCCCTGTCAACAACGCTGTCGGGGTGCTGCGGTGGAGGGCTTCGCCAAAAACAGATGAC GTGAGCGCCTGCCCGATTACCTTTACAGTTTGGATCAATCGAGAGGCGGGCAAATTCAACGTGACGGTCGAGTAT GAATTAACGGGTGGGGAAGCACTGAGAGACGTTAGCGTTGTAGTGCCATATTCTGGCAGTGAGCCTGTCGTGGCA AGTTTTGACGCTGCCTACGACGTGTCTGGTGACACGCTCGAGTGGAATATCGGGTCGTTGGACAGTGACAATGCC AACGGCTCATTCGAGTTTGAAGCAAACAGCAGTGACGAGAACGACTTTTTCCCTATGACTGTGAGGTTCAGCAAG ACAACGCCCTATATTAAGGTTGATGTGACTGAGGTATCGTTGCTAGAAGAGAAAGAAGCGGTGACATTTTCTAAG GATATTAAGTCACATGCAGAACACTTTCAAATTGAGTAA |
| Gene | >OphauG2|2262 ATGGTGCGCAGAAATGCTTAGTACCCGTTTTCACTTGGCTCAAGGCGTCTAGAACTGACATCGATCTGCCATTTG CCCTGGCTTAGGTCATTCTTGCAGCTTCGATTTGCACCCGCGGAGGGAAAGCTGTCCTATCCAGACAGTTTCGCG AGATGCCAAGGTCGCGAATAGAAGCCCTTCTCGCATCATTTCCAAAGTTGGCCGACAGTGGCACGCAGCACACGA CGGTCGAGCAAGATAGTGTCCGATTCGTCTACCAACCGCTCGACGAGCTTTACATGGTGCTTATCACCAATCGCC AATCCAATATTCTGCAAGACATTGATTCACTGCACCTCTTTGCACAAGTCGTGACCAGTGCATGCAAGTCTCTGG ATGAGAGGGAAATCCTCAAGAATGCCTACGAAATGCTTAGCGCCTTCGATGAGATGGTTGCTCTGGGCTATCGCG AAAACGTGGCCCTGAGTCAGATCAAGACTTTTCTTGATATGGAAAGCCACGAGGAGCGCATCCAGGACATCATTG CCAGAGTCCGTTCATATATATACCCTCAACCGTAAGCTTTGCGCACCGCGTTCTGACCTTGCTGGTCCTACAGAA CAAAGAACTCGAGGCCACTGAAGAGCGGAAACGAAAAGCAAAGCAACTCGAGGTGCAACGAAAGGAATCTGCGCG TACGGGCCGCGGGGCTGTGTCGAGGACACCAGTCTATCCTTCTTACCAGTCTGCCTCGCGACCCAGCGCTCCGGA CTCGTACGACACTTACGAGGCGGAGAAGAACAAGACATATAACAAGTACGTGTGCCTCAGGCTTTTTTTACTCGT ATTTATTGCTTCTCGCAAAGGGCTCGGAAAATCTATTCGCGGGCGACCAGGGAGCTAACCGACTGTAAGGCCAAT TGCCCCCAGAGGTAAGGGCATGCAGCTGGGCAAGAAATCTAAGACAACGGACATGTTTGAGCGCGTTCGCGGAGA TATGGGTCCCGAAATGGAAGCGGCGCCCCTCGTGACGCCCTCTTCCGGAGCGGCCGCTGAGCTGGCTGAGCCACG TGTGTCATCAACACTAGACCGCGACGCTATTCACGTAACCATTTCTGAGAACATTACTGCAAAACTATCTCGCGA GGGTGCTGTTAATTCGTTGGCTATTAGCGGAGACCTCACCCTACGCATTTCGGACCCTGGGCTGACCAAGGTCAA GCTGGCGCTCGAAGCTACCGCATCTCATGGCACACAATTCCGTACACATCCCAACGTCGATCGCAACGCCTTCCA TAATTCCAAGGTGATACAAATGAGTAACACGGCCCGTGGGTTCCCTGTCAACAACGCTGTCGGGGTGCTGCGGTG GAGGGCTTCGCCAAAAACAGATGACGTGAGCGCCTGCCCGATTACCTTTACAGTTTGGATCAATCGAGAGGCGGG CAAATTCAACGTGACGGTCGAGTATGAATTAACGGGTGGGGAAGCACTGAGAGACGTTAGCGTTGTAGTGCCATA TTCTGGCAGTGAGCCTGTCGTGGCAAGTTTTGACGCTGCCTACGACGTGTCTGGTGACACGCTCGAGTGGAATAT CGGGTCGTTGGACAGTGACAATGCCAACGGCTCATTCGAGTTTGAAGCAAACAGCAGTGACGAGAACGACTTTTT CCCTATGACTGTGAGGTTCAGCAAGACAACGCCCTATATTAAGGTTGATGTATGTTTCTATCTTGTTTCCCCGTG CCATGGCACATTCACTAACAAGGCGCTAGGTGACTGAGGTATCGTTGCTAGAAGAGAAAGAAGCGGTGACATTTT CTAAGGATATTAAGTCACATGCAGAACACTTTCAAATTGAGTAA |