© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|2242 |
| Gene name | |
| Location | Contig_1784:549..2078 |
| Strand | + |
| Gene length (bp) | 1529 |
| Transcript length (bp) | 924 |
| Coding sequence length (bp) | 924 |
| Protein length (aa) | 308 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.1E-18 | 91 | 158 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8L773|THO4A_ARATH | THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1 | 1 | 163 | 3.0E-16 |
| sp|Q9JJW6|ALRF2_MOUSE | Aly/REF export factor 2 OS=Mus musculus GN=Alyref2 PE=1 SV=1 | 1 | 171 | 2.0E-13 |
| sp|Q9URV0|YBLC_SCHPO | Uncharacterized RNA-binding protein C106.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC106.12c PE=3 SV=1 | 5 | 161 | 7.0E-12 |
| sp|Q8L719|THO4B_ARATH | THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1 | 47 | 178 | 9.0E-11 |
| sp|Q58EA2|THO4A_XENLA | THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1 | 87 | 165 | 1.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8L773|THO4A_ARATH | THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1 | 1 | 163 | 3.0E-16 |
| sp|Q9JJW6|ALRF2_MOUSE | Aly/REF export factor 2 OS=Mus musculus GN=Alyref2 PE=1 SV=1 | 1 | 171 | 2.0E-13 |
| sp|Q9URV0|YBLC_SCHPO | Uncharacterized RNA-binding protein C106.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC106.12c PE=3 SV=1 | 5 | 161 | 7.0E-12 |
| sp|Q8L719|THO4B_ARATH | THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1 | 47 | 178 | 9.0E-11 |
| sp|Q58EA2|THO4A_XENLA | THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1 | 87 | 165 | 1.0E-10 |
| sp|Q28FB9|THOC4_XENTR | THO complex subunit 4 OS=Xenopus tropicalis GN=alyref PE=2 SV=1 | 87 | 165 | 1.0E-10 |
| sp|B5FXN8|THOC4_TAEGU | THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1 | 87 | 165 | 2.0E-10 |
| sp|P19684|ROC5_NICSY | 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 | 87 | 158 | 3.0E-10 |
| sp|Q9CAE4|U1131_ARATH | U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana GN=SNRNP31 PE=2 SV=1 | 88 | 162 | 9.0E-10 |
| sp|O08583|THOC4_MOUSE | THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3 | 89 | 165 | 1.0E-09 |
| sp|Q86V81|THOC4_HUMAN | THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3 | 89 | 165 | 2.0E-09 |
| sp|Q3T0I4|THOC4_BOVIN | THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1 | 89 | 165 | 2.0E-09 |
| sp|Q6NQ72|THO4D_ARATH | THO complex subunit 4D OS=Arabidopsis thaliana GN=ALY4 PE=1 SV=1 | 87 | 163 | 2.0E-09 |
| sp|Q6GLW1|THO4B_XENLA | THO complex subunit 4-B OS=Xenopus laevis GN=alyref-b PE=2 SV=1 | 87 | 165 | 2.0E-09 |
| sp|Q9ZQA8|PABP7_ARATH | Polyadenylate-binding protein 7 OS=Arabidopsis thaliana GN=PAB7 PE=2 SV=1 | 86 | 162 | 2.0E-09 |
| sp|Q94EH8|THO4C_ARATH | THO complex subunit 4C OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1 | 1 | 168 | 3.0E-09 |
| sp|Q12159|YRA1_YEAST | RNA annealing protein YRA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YRA1 PE=1 SV=2 | 1 | 188 | 7.0E-09 |
| sp|Q9EPH8|PABP1_RAT | Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=1 SV=1 | 88 | 160 | 1.0E-08 |
| sp|A3LXL0|PABP_PICST | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1 | 88 | 160 | 2.0E-08 |
| sp|P29341|PABP1_MOUSE | Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2 | 88 | 160 | 2.0E-08 |
| sp|Q6PFR5|TRA2A_MOUSE | Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1 SV=1 | 88 | 158 | 5.0E-08 |
| sp|Q13595|TRA2A_HUMAN | Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1 SV=1 | 88 | 158 | 5.0E-08 |
| sp|Q9WX37|RBPE_NOSS1 | Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rbpE PE=3 SV=3 | 90 | 158 | 5.0E-08 |
| sp|Q9FXA2|PABP8_ARATH | Polyadenylate-binding protein 8 OS=Arabidopsis thaliana GN=PAB8 PE=1 SV=1 | 55 | 162 | 5.0E-08 |
| sp|P42731|PABP2_ARATH | Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1 | 51 | 162 | 5.0E-08 |
| sp|Q08935|ROC1_NICSY | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 | 88 | 172 | 5.0E-08 |
| sp|Q5R8F7|PABP1_PONAB | Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1 | 88 | 160 | 6.0E-08 |
| sp|P11940|PABP1_HUMAN | Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2 | 88 | 160 | 6.0E-08 |
| sp|P61286|PABP1_BOVIN | Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1 | 88 | 160 | 6.0E-08 |
| sp|Q9H361|PABP3_HUMAN | Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2 | 90 | 160 | 7.0E-08 |
| sp|Q54WM4|EIF3G_DICDI | Eukaryotic translation initiation factor 3 subunit G OS=Dictyostelium discoideum GN=eif3G PE=3 SV=1 | 83 | 150 | 8.0E-08 |
| sp|Q5RF83|CIRBP_PONAB | Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1 | 89 | 158 | 8.0E-08 |
| sp|Q14011|CIRBP_HUMAN | Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1 | 89 | 158 | 8.0E-08 |
| sp|A5DW14|PABP_LODEL | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3 SV=1 | 82 | 162 | 8.0E-08 |
| sp|P49313|ROC1_NICPL | 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1 | 88 | 172 | 9.0E-08 |
| sp|A5DW14|PABP_LODEL | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3 SV=1 | 88 | 160 | 1.0E-07 |
| sp|Q28IQ9|CIRBP_XENTR | Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1 | 89 | 158 | 1.0E-07 |
| sp|P04147|PABP_YEAST | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAB1 PE=1 SV=4 | 88 | 160 | 1.0E-07 |
| sp|Q7ZWA3|RBMX_DANRE | RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2 SV=1 | 86 | 158 | 1.0E-07 |
| sp|Q09330|MLO3_SCHPO | mRNA export protein mlo3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mlo3 PE=1 SV=1 | 1 | 150 | 1.0E-07 |
| sp|Q5AI15|PABP_CANAL | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3 SV=1 | 86 | 162 | 1.0E-07 |
| sp|P33240|CSTF2_HUMAN | Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1 SV=1 | 92 | 155 | 1.0E-07 |
| sp|Q9ZUU4|CP29B_ARATH | RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1 | 88 | 169 | 1.0E-07 |
| sp|P60825|CIRBP_RAT | Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1 | 89 | 158 | 1.0E-07 |
| sp|P60824|CIRBP_MOUSE | Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1 | 89 | 158 | 1.0E-07 |
| sp|P60826|CIRBP_CRIGR | Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1 | 89 | 158 | 1.0E-07 |
| sp|Q5RDA3|CSTF2_PONAB | Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2 SV=1 | 92 | 155 | 2.0E-07 |
| sp|Q9LIS2|RBG4_ARATH | Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1 | 88 | 162 | 2.0E-07 |
| sp|Q8HXM1|CSTF2_BOVIN | Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2 SV=1 | 92 | 150 | 2.0E-07 |
| sp|O93235|CIRBA_XENLA | Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a PE=1 SV=2 | 89 | 158 | 2.0E-07 |
| sp|Q6IRQ4|RBMX_XENLA | RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx PE=2 SV=1 | 86 | 158 | 2.0E-07 |
| sp|Q8BIQ5|CSTF2_MOUSE | Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1 SV=2 | 92 | 150 | 2.0E-07 |
| sp|Q04836|CP31A_ARATH | 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1 | 70 | 169 | 2.0E-07 |
| sp|F4HT49|PABP1_ARATH | Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PAB1 PE=2 SV=2 | 86 | 198 | 2.0E-07 |
| sp|Q9P3U1|YKX5_SCHPO | Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=3 SV=3 | 85 | 166 | 2.0E-07 |
| sp|Q5AI15|PABP_CANAL | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3 SV=1 | 88 | 160 | 3.0E-07 |
| sp|Q9DED4|CIRBB_XENLA | Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b PE=1 SV=1 | 89 | 158 | 3.0E-07 |
| sp|Q9D0E1|HNRPM_MOUSE | Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus GN=Hnrnpm PE=1 SV=3 | 87 | 181 | 3.0E-07 |
| sp|B4LVR8|EI3G2_DROVI | Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila virilis GN=eIF3-S4-2 PE=3 SV=1 | 88 | 150 | 4.0E-07 |
| sp|Q15415|RBY1F_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member F/J OS=Homo sapiens GN=RBMY1F PE=1 SV=2 | 89 | 158 | 5.0E-07 |
| sp|Q5RC80|RBM39_PONAB | RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1 | 89 | 158 | 5.0E-07 |
| sp|Q9FNR1|RBG3_ARATH | Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1 | 88 | 158 | 6.0E-07 |
| sp|A5DM21|PABP_PICGU | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1 PE=3 SV=2 | 82 | 162 | 6.0E-07 |
| sp|Q62826|HNRPM_RAT | Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4 | 87 | 181 | 6.0E-07 |
| sp|P0DJD3|RBY1A_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo sapiens GN=RBMY1A1 PE=1 SV=1 | 89 | 158 | 6.0E-07 |
| sp|P0C7P1|RBY1D_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo sapiens GN=RBMY1D PE=2 SV=1 | 89 | 158 | 6.0E-07 |
| sp|A6NEQ0|RBY1E_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo sapiens GN=RBMY1E PE=2 SV=1 | 89 | 158 | 6.0E-07 |
| sp|Q8VH51|RBM39_MOUSE | RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2 | 89 | 158 | 6.0E-07 |
| sp|Q39061|CP33_ARATH | RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1 | 89 | 162 | 6.0E-07 |
| sp|P0DJD4|RBY1C_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo sapiens GN=RBMY1C PE=1 SV=1 | 89 | 158 | 6.0E-07 |
| sp|Q14498|RBM39_HUMAN | RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2 | 89 | 158 | 7.0E-07 |
| sp|A6NDE4|RBY1B_HUMAN | RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo sapiens GN=RBMY1B PE=2 SV=2 | 89 | 158 | 7.0E-07 |
| sp|O22173|PABP4_ARATH | Polyadenylate-binding protein 4 OS=Arabidopsis thaliana GN=PAB4 PE=1 SV=1 | 87 | 162 | 7.0E-07 |
| sp|P62997|TRA2B_RAT | Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b PE=1 SV=1 | 90 | 158 | 7.0E-07 |
| sp|P62996|TRA2B_MOUSE | Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1 SV=1 | 90 | 158 | 7.0E-07 |
| sp|P62995|TRA2B_HUMAN | Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1 SV=1 | 90 | 158 | 7.0E-07 |
| sp|Q3ZBT6|TRA2B_BOVIN | Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1 | 90 | 158 | 7.0E-07 |
| sp|Q4P8R9|PABP_USTMA | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1 | 73 | 161 | 7.0E-07 |
| sp|P60050|PABP5_PONPY | Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1 | 88 | 160 | 8.0E-07 |
| sp|P60049|PABP5_PANTR | Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1 | 88 | 160 | 8.0E-07 |
| sp|P60048|PABP5_HYLLA | Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1 | 88 | 160 | 8.0E-07 |
| sp|Q96DU9|PABP5_HUMAN | Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1 | 88 | 160 | 8.0E-07 |
| sp|P60047|PABP5_GORGO | Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1 | 88 | 160 | 8.0E-07 |
| sp|Q7JGR2|PABP5_MACMU | Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1 | 88 | 160 | 8.0E-07 |
| sp|B4JXU2|EI3G2_DROGR | Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila grimshawi GN=eIF3-S4-2 PE=3 SV=1 | 90 | 150 | 8.0E-07 |
| sp|P52272|HNRPM_HUMAN | Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3 | 87 | 181 | 8.0E-07 |
| sp|B4K7S5|EI3G2_DROMO | Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila mojavensis GN=eIF3-S4-2 PE=3 SV=1 | 88 | 150 | 8.0E-07 |
| sp|Q0U6E7|EIF3G_PHANO | Eukaryotic translation initiation factor 3 subunit G OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=TIF35 PE=3 SV=2 | 88 | 150 | 8.0E-07 |
| sp|Q6BI95|PABP_DEBHA | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2 | 88 | 160 | 9.0E-07 |
| sp|Q7S6N6|PABP_NEUCR | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pabp-1 PE=3 SV=1 | 88 | 160 | 9.0E-07 |
| sp|Q6GR16|EPABB_XENLA | Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-b PE=2 SV=1 | 74 | 160 | 1.0E-06 |
| sp|P20965|PABPA_XENLA | Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a PE=1 SV=3 | 88 | 160 | 1.0E-06 |
| sp|P38922|HRB1_YEAST | Protein HRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRB1 PE=1 SV=2 | 82 | 170 | 1.0E-06 |
| sp|Q19706|EIF3G_CAEEL | Eukaryotic translation initiation factor 3 subunit G OS=Caenorhabditis elegans GN=eif-3.G PE=3 SV=2 | 90 | 169 | 2.0E-06 |
| sp|O02008|TRA2_DROVI | Transformer-2 sex-determining protein OS=Drosophila virilis GN=tra2 PE=3 SV=1 | 70 | 185 | 2.0E-06 |
| sp|Q98SP8|EPABA_XENLA | Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-a PE=1 SV=2 | 74 | 160 | 2.0E-06 |
| sp|P0CB38|PAB4L_HUMAN | Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1 | 92 | 160 | 2.0E-06 |
| sp|Q6DEY7|EPAB_XENTR | Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1 | 74 | 160 | 2.0E-06 |
| sp|Q4P7G1|EIF3G_USTMA | Eukaryotic translation initiation factor 3 subunit G OS=Ustilago maydis (strain 521 / FGSC 9021) GN=TIF35 PE=3 SV=1 | 90 | 167 | 2.0E-06 |
| sp|Q6BI95|PABP_DEBHA | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2 | 82 | 162 | 3.0E-06 |
| sp|Q9FMG4|SC35_ARATH | Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana GN=SC35 PE=1 SV=1 | 90 | 167 | 3.0E-06 |
| sp|Q13310|PABP4_HUMAN | Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1 | 88 | 160 | 3.0E-06 |
| sp|Q9H0L4|CSTFT_HUMAN | Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1 | 92 | 155 | 3.0E-06 |
| sp|A8WLV5|EIF3G_CAEBR | Eukaryotic translation initiation factor 3 subunit G OS=Caenorhabditis briggsae GN=eif-3.G.1 PE=3 SV=2 | 90 | 169 | 3.0E-06 |
| sp|Q05196|PABP5_ARATH | Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=3 | 62 | 198 | 3.0E-06 |
| sp|Q8C7E9|CSTFT_MOUSE | Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2 | 92 | 155 | 3.0E-06 |
| sp|A3LXL0|PABP_PICST | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1 | 82 | 162 | 4.0E-06 |
| sp|Q8N9W6|BOLL_HUMAN | Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV=2 | 67 | 152 | 4.0E-06 |
| sp|Q8WP23|BOLL_MACFA | Protein boule-like OS=Macaca fascicularis GN=BOLL PE=2 SV=2 | 67 | 152 | 4.0E-06 |
| sp|Q4WJT7|MRD1_ASPFU | Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mrd1 PE=3 SV=1 | 87 | 167 | 4.0E-06 |
| sp|Q9ZUU4|CP29B_ARATH | RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1 | 89 | 158 | 5.0E-06 |
| sp|Q43349|CP29A_ARATH | 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP29A PE=2 SV=2 | 89 | 172 | 5.0E-06 |
| sp|Q2H0U6|EIF3G_CHAGB | Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=TIF35 PE=3 SV=1 | 88 | 150 | 5.0E-06 |
| sp|Q6PG31|RNPS1_DANRE | RNA-binding protein with serine-rich domain 1 OS=Danio rerio GN=rnps1 PE=2 SV=1 | 85 | 163 | 6.0E-06 |
| sp|Q91VM5|RMXL1_MOUSE | RNA binding motif protein, X-linked-like-1 OS=Mus musculus GN=Rbmxl1 PE=2 SV=1 | 86 | 158 | 8.0E-06 |
| sp|Q08937|ROC2_NICSY | 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 | 89 | 169 | 8.0E-06 |
| sp|Q29RT0|RBMX_BOVIN | RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2 SV=1 | 82 | 161 | 8.0E-06 |
| sp|Q08937|ROC2_NICSY | 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 | 78 | 158 | 9.0E-06 |
| sp|Q0CR95|PABP_ASPTN | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1 | 88 | 160 | 9.0E-06 |
| sp|Q5XG24|RNP1A_XENLA | RNA-binding protein with serine-rich domain 1-A OS=Xenopus laevis GN=rnps1-a PE=2 SV=1 | 85 | 187 | 9.0E-06 |
| sp|Q4V898|RBMX_RAT | RNA-binding motif protein, X chromosome OS=Rattus norvegicus GN=Rbmx PE=1 SV=1 | 86 | 158 | 9.0E-06 |
| sp|Q9WV02|RBMX_MOUSE | RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx PE=1 SV=1 | 86 | 158 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 45 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|2242 MADKMDRGLDEIIADTRRGGPSSRRGGGHGRRDRHDNYPRDGVRKSTREYHRGIDSEWVHDRYQDNNSRRTAPRR QREIPYVSEPRGSKLKVENIHYDLTEDDLDELFTRIGPVTRLQLLYDRAGRSEGIAFVTYESRDDAKEAIRQFDG ANANGQPIYLSLLHSAPTRNPFDTAHMPSRPLAERISAPKGRSRSWSPHGRQDDDDQGSSRKGIDRYTPGAARRS RSPMQRGRGGRRPGAGRDGLNRDQQSTRGGRAIIRSKKTQNELDAEMEDYFAGNRAPSLSLGAESSNKAAGVAAN EDVDMIG* |
| Coding | >OphauG2|2242 ATGGCTGACAAGATGGATCGCGGCCTCGACGAAATCATTGCCGACACGCGCAGAGGCGGCCCTTCAAGTCGACGC GGCGGCGGCCATGGCCGTCGCGACCGCCATGACAACTATCCCCGTGACGGCGTCAGAAAGTCTACTCGCGAATAT CATCGTGGCATTGATAGCGAATGGGTTCACGATCGTTACCAAGACAACAACTCTAGAAGAACTGCCCCTCGACGA CAGCGCGAGATTCCCTATGTCAGCGAACCTCGAGGTTCTAAACTCAAAGTTGAAAACATACATTATGACCTCACC GAAGACGATCTTGATGAACTTTTTACGAGAATTGGCCCTGTCACACGGCTGCAGCTGCTTTATGACCGCGCTGGA CGATCCGAGGGCATCGCTTTCGTGACTTACGAGAGCAGAGATGATGCCAAGGAGGCCATCAGACAGTTTGACGGA GCCAATGCCAATGGCCAACCGATATACTTGAGCTTGTTACACAGCGCGCCAACACGCAATCCCTTTGATACGGCT CACATGCCAAGTCGTCCTCTGGCAGAGAGAATCTCGGCCCCCAAAGGCCGCTCTCGCTCCTGGTCTCCCCATGGA CGACAAGACGACGACGATCAAGGTTCATCGCGCAAGGGCATTGACAGATATACGCCAGGGGCTGCCAGGCGTTCG AGAAGTCCGATGCAGAGGGGCCGTGGAGGTCGTCGGCCAGGCGCTGGGCGCGATGGCCTCAATAGAGATCAGCAA AGCACTCGTGGTGGTCGAGCCATTATCCGCTCCAAGAAGACACAGAATGAATTGGATGCGGAGATGGAGGACTAT TTTGCAGGAAACCGTGCTCCGTCGTTAAGTCTTGGTGCCGAGAGTTCAAACAAGGCTGCTGGGGTAGCAGCCAAC GAGGATGTCGACATGATTGGGTAA |
| Transcript | >OphauG2|2242 ATGGCTGACAAGATGGATCGCGGCCTCGACGAAATCATTGCCGACACGCGCAGAGGCGGCCCTTCAAGTCGACGC GGCGGCGGCCATGGCCGTCGCGACCGCCATGACAACTATCCCCGTGACGGCGTCAGAAAGTCTACTCGCGAATAT CATCGTGGCATTGATAGCGAATGGGTTCACGATCGTTACCAAGACAACAACTCTAGAAGAACTGCCCCTCGACGA CAGCGCGAGATTCCCTATGTCAGCGAACCTCGAGGTTCTAAACTCAAAGTTGAAAACATACATTATGACCTCACC GAAGACGATCTTGATGAACTTTTTACGAGAATTGGCCCTGTCACACGGCTGCAGCTGCTTTATGACCGCGCTGGA CGATCCGAGGGCATCGCTTTCGTGACTTACGAGAGCAGAGATGATGCCAAGGAGGCCATCAGACAGTTTGACGGA GCCAATGCCAATGGCCAACCGATATACTTGAGCTTGTTACACAGCGCGCCAACACGCAATCCCTTTGATACGGCT CACATGCCAAGTCGTCCTCTGGCAGAGAGAATCTCGGCCCCCAAAGGCCGCTCTCGCTCCTGGTCTCCCCATGGA CGACAAGACGACGACGATCAAGGTTCATCGCGCAAGGGCATTGACAGATATACGCCAGGGGCTGCCAGGCGTTCG AGAAGTCCGATGCAGAGGGGCCGTGGAGGTCGTCGGCCAGGCGCTGGGCGCGATGGCCTCAATAGAGATCAGCAA AGCACTCGTGGTGGTCGAGCCATTATCCGCTCCAAGAAGACACAGAATGAATTGGATGCGGAGATGGAGGACTAT TTTGCAGGAAACCGTGCTCCGTCGTTAAGTCTTGGTGCCGAGAGTTCAAACAAGGCTGCTGGGGTAGCAGCCAAC GAGGATGTCGACATGATTGGGTAA |
| Gene | >OphauG2|2242 ATGGCTGACAAGATGGATCGCGGCCTCGACGAAATCATTGCCGACACGGTATGTTTCCTTTACTTGTTGGCTCTC GGCCACGCCAGGTCTGGCTAACAAGGATTTGCCGCTGGCAGCGCAGAGGCGGCCCTTCAAGTCGACGCGGCGGCG GCCATGGCCGTCGCGACCGCCATGACAACTATCCCCGTGACGGCGTCAGAAAGGTCCGTCTGTCTTTGGGCCCCC GCGTCCAGCAGGAAGCTCGGCAAAAAGTCCACGTCGATGGTGGCTCGCCACAAGATGAAATGGCGGCTCATGGGT CTCGGACTCGAGCACTTGTTCCTTGCATATATATCTACCCATGGCTTCTCGGGCCCTCGACGACACCACCCGGAT CTCATGTGTACAGTCTGATTGGCTAACATGTGCCTCGTCTGTTGGCAACAGTCTACTCGCGAATATCATCGTGGC ATTGATAGGTGAGAGGCCGTCTGCAGACGCTGCATACGATGGAGAGAATGCCCCCTACAAGCTGCTAACGCCTTG TGCAGCGAATGGGTTCACGATCGTTACCAAGACAACAGTAGGATCGCCAGGTCCTTGGGCCGTTGGAATCCGGCT CATAAGCCTCACATGGCATAGACTCTAGAAGAACTGCCCCTCGACGACAGCGCGAGATTCCCTATGTCAGGTGAG CATTTGGCCCCAGCTTCTCCAGGGCTTGGAGCTGATGACTTGGCCTGCCAGCGAACCTCGAGGTTCTAAACTCAA AGTTGAAAACATACATTATGACCTCACCGAAGACGATCTTGATGTACGGCCTACAGTGCTCGTTGGCACTGCTCA CCATGTTGCACAATGCACTGACCATGGTGCAAGGAACTTTTTACGAGAATTGGCCCTGTCACACGGCTGCAGCTG CTTTATGACCGCGCTGGACGATCCGAGGGCATCGCTTTCGTGACTTACGAGAGCAGAGATGATGCCAAGGAGGCC ATCAGACAGTTTGACGGAGCCAATGCCAATGGTTGGTTTTTGTCTAGTCTTGGAAGGGAGGACAAGAAGTGGCTA ATACGCTAGCTCCCAAAGGCCAACCGATATACTTGAGCTTGTTACACAGCGCGCCAACACGCAATCCCTTTGATA CGGCTCACATGCCAAGTCGTCCTCTGGCAGAGAGAATCTCGGCCCCCAAAGGCCGCTCTCGCTCCTGGTCTCCCC ATGGACGACAAGACGACGACGATCAAGGTTCATCGCGCAAGGGCATTGACAGATATACGCCAGGGGCTGCCAGGC GTTCGAGAAGTCCGATGCAGAGGGGCCGTGGAGGTCGTCGGCCAGGCGCTGGGCGCGATGGCCTCAATAGAGATC AGCAAAGCACTCGTGGTGGTCGAGCCATTATCCGCTCCAAGAAGACACAGAATGAATTGGATGCGGAGATGGAGG ACTATTTTGCAGGAAACCGTGCTCCGTCGTTAAGTCTTGGTGCCGAGAGTTCAAACAAGGCTGCTGGGGTAGCAG CCAACGAGGATGTCGACATGATTGGGTAA |