Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|2225
Gene name
LocationContig_1774:388..1615
Strand+
Gene length (bp)1227
Transcript length (bp)966
Coding sequence length (bp)966
Protein length (aa) 322

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03388 Lectin_leg-like Legume-like lectin family 1.0E-64 31 251

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O94401|YQF8_SCHPO L-type lectin-like domain-containing protein C126.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC126.08c PE=3 SV=1 31 273 2.0E-54
sp|P59481|LMA2L_MOUSE VIP36-like protein OS=Mus musculus GN=Lman2l PE=1 SV=1 32 317 8.0E-49
sp|Q5RCF0|LMA2L_PONAB VIP36-like protein OS=Pongo abelii GN=LMAN2L PE=3 SV=1 32 317 4.0E-48
sp|Q9H0V9|LMA2L_HUMAN VIP36-like protein OS=Homo sapiens GN=LMAN2L PE=1 SV=1 32 317 5.0E-48
sp|Q2HJD1|LMA2L_BOVIN VIP36-like protein OS=Bos taurus GN=LMAN2L PE=2 SV=1 32 317 1.0E-47
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Swissprot ID Swissprot Description Start End E-value
sp|O94401|YQF8_SCHPO L-type lectin-like domain-containing protein C126.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC126.08c PE=3 SV=1 31 273 2.0E-54
sp|P59481|LMA2L_MOUSE VIP36-like protein OS=Mus musculus GN=Lman2l PE=1 SV=1 32 317 8.0E-49
sp|Q5RCF0|LMA2L_PONAB VIP36-like protein OS=Pongo abelii GN=LMAN2L PE=3 SV=1 32 317 4.0E-48
sp|Q9H0V9|LMA2L_HUMAN VIP36-like protein OS=Homo sapiens GN=LMAN2L PE=1 SV=1 32 317 5.0E-48
sp|Q2HJD1|LMA2L_BOVIN VIP36-like protein OS=Bos taurus GN=LMAN2L PE=2 SV=1 32 317 1.0E-47
sp|P49256|LMAN2_CANLF Vesicular integral-membrane protein VIP36 OS=Canis lupus familiaris GN=LMAN2 PE=1 SV=1 18 247 1.0E-42
sp|Q12907|LMAN2_HUMAN Vesicular integral-membrane protein VIP36 OS=Homo sapiens GN=LMAN2 PE=1 SV=1 17 247 2.0E-42
sp|Q9DBH5|LMAN2_MOUSE Vesicular integral-membrane protein VIP36 OS=Mus musculus GN=Lman2 PE=1 SV=2 18 247 6.0E-42
sp|Q9D0F3|LMAN1_MOUSE Protein ERGIC-53 OS=Mus musculus GN=Lman1 PE=1 SV=1 34 264 6.0E-31
sp|Q62902|LMAN1_RAT Protein ERGIC-53 OS=Rattus norvegicus GN=Lman1 PE=1 SV=1 34 264 1.0E-30
sp|P49257|LMAN1_HUMAN Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=2 2 257 7.0E-30
sp|Q9TU32|LMAN1_CHLAE Protein ERGIC-53 OS=Chlorocebus aethiops GN=LMAN1 PE=2 SV=1 34 257 4.0E-29
sp|Q8VCD3|LMA1L_MOUSE Protein ERGIC-53-like OS=Mus musculus GN=Lman1l PE=2 SV=2 54 257 1.0E-19
sp|Q9HAT1|LMA1L_HUMAN Protein ERGIC-53-like OS=Homo sapiens GN=LMAN1L PE=2 SV=2 54 259 3.0E-19
sp|Q5FB95|LMA1L_RAT Protein ERGIC-53-like OS=Rattus norvegicus GN=Lman1l PE=1 SV=1 54 258 4.0E-19
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GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

Domain # Start End Length
1 288 310 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|2225
MRLPSLSAALLAALAWTVQADEHDDLKSISLRTHSLQQPYLDSDMQSRWFDFGGDTIVRTDSYIRLTSDKPSQSG
WLYSRVPLTATNWEVEVEFKISGKNHLYGDGFAMWVTKQRAEPGPVFGAVDKFEGLGIFFDTYKNNRPGVVFPYV
MAMFGDGQTTYDKDTDGKETELAGCSARGIRHASVPTKLRLTYIQDKQLRLELQHKAEDDWQLCFEKEQPPAIPN
IAYLGFSAETGELSDNHDIISVTTKNLYNSPGAPASGKKGKSKSKSKAKSSGSVAGKTEGSSWTWFFTKIIFFFL
AVGAVYVGYTAWRTGSRSHRF*
Coding >OphauG2|2225
ATGCGGCTGCCCTCCTTGTCGGCCGCGCTGCTTGCGGCGCTCGCATGGACCGTGCAAGCCGACGAGCACGATGAT
CTTAAGAGCATATCGCTGCGGACTCATAGCTTGCAGCAGCCGTACCTGGATTCAGATATGCAAAGCCGGTGGTTT
GACTTTGGCGGAGATACCATTGTGCGGACAGACTCATATATCCGACTGACTTCGGACAAGCCCTCCCAGTCGGGA
TGGCTGTATTCGCGCGTGCCCCTGACGGCAACGAATTGGGAGGTGGAAGTCGAGTTCAAGATTTCGGGCAAAAAC
CACCTCTACGGAGACGGCTTTGCCATGTGGGTGACGAAGCAGCGTGCCGAGCCGGGCCCCGTCTTTGGCGCGGTG
GACAAGTTTGAAGGGCTGGGCATCTTTTTCGACACGTACAAGAATAACCGGCCGGGCGTCGTCTTTCCCTACGTC
ATGGCCATGTTTGGTGACGGGCAGACAACCTACGACAAGGATACTGACGGCAAGGAGACGGAGCTGGCTGGTTGC
TCGGCACGCGGCATCCGACACGCGTCGGTGCCGACCAAGCTGCGGTTGACGTATATCCAGGACAAGCAGCTGCGG
CTCGAGTTACAGCACAAGGCTGAGGACGACTGGCAACTGTGCTTTGAAAAGGAGCAGCCGCCCGCGATTCCCAAC
ATTGCCTACCTGGGCTTTAGCGCCGAGACGGGCGAGTTGAGCGATAACCACGACATTATTTCGGTCACGACGAAG
AATCTCTACAACAGTCCCGGAGCGCCGGCGAGCGGCAAGAAGGGCAAGAGCAAGAGCAAGAGCAAAGCCAAAAGC
AGTGGCAGTGTTGCGGGCAAGACTGAAGGAAGCTCGTGGACGTGGTTCTTTACAAAGATTATCTTTTTCTTCTTG
GCGGTGGGGGCGGTGTATGTGGGATATACGGCTTGGAGGACAGGAAGTAGGAGTCATCGCTTTTAA
Transcript >OphauG2|2225
ATGCGGCTGCCCTCCTTGTCGGCCGCGCTGCTTGCGGCGCTCGCATGGACCGTGCAAGCCGACGAGCACGATGAT
CTTAAGAGCATATCGCTGCGGACTCATAGCTTGCAGCAGCCGTACCTGGATTCAGATATGCAAAGCCGGTGGTTT
GACTTTGGCGGAGATACCATTGTGCGGACAGACTCATATATCCGACTGACTTCGGACAAGCCCTCCCAGTCGGGA
TGGCTGTATTCGCGCGTGCCCCTGACGGCAACGAATTGGGAGGTGGAAGTCGAGTTCAAGATTTCGGGCAAAAAC
CACCTCTACGGAGACGGCTTTGCCATGTGGGTGACGAAGCAGCGTGCCGAGCCGGGCCCCGTCTTTGGCGCGGTG
GACAAGTTTGAAGGGCTGGGCATCTTTTTCGACACGTACAAGAATAACCGGCCGGGCGTCGTCTTTCCCTACGTC
ATGGCCATGTTTGGTGACGGGCAGACAACCTACGACAAGGATACTGACGGCAAGGAGACGGAGCTGGCTGGTTGC
TCGGCACGCGGCATCCGACACGCGTCGGTGCCGACCAAGCTGCGGTTGACGTATATCCAGGACAAGCAGCTGCGG
CTCGAGTTACAGCACAAGGCTGAGGACGACTGGCAACTGTGCTTTGAAAAGGAGCAGCCGCCCGCGATTCCCAAC
ATTGCCTACCTGGGCTTTAGCGCCGAGACGGGCGAGTTGAGCGATAACCACGACATTATTTCGGTCACGACGAAG
AATCTCTACAACAGTCCCGGAGCGCCGGCGAGCGGCAAGAAGGGCAAGAGCAAGAGCAAGAGCAAAGCCAAAAGC
AGTGGCAGTGTTGCGGGCAAGACTGAAGGAAGCTCGTGGACGTGGTTCTTTACAAAGATTATCTTTTTCTTCTTG
GCGGTGGGGGCGGTGTATGTGGGATATACGGCTTGGAGGACAGGAAGTAGGAGTCATCGCTTTTAA
Gene >OphauG2|2225
ATGCGGCTGCCCTCCTTGTCGGCCGCGCTGCTTGCGGCGCTCGCATGGACCGTGCAAGCCGACGAGCACGATGAT
CTTAAGAGCATATCGGTTCGTTGCTGAGACTTGGAGCTACGCGGGGGTGGAATCGTGGGCTGACGGGGGGAGGGA
AATGCAGCTGCGGACTCATAGCTTGCAGCAGGTCAGAGCACCTTGACGCTCAGTCCAGAGGATAACTACTCGCAC
GGGGCCTTGGGCTGACTTGGGAGCAGCCGTACCTGGATTCAGATATGCAAAGCCGGTGGTTTGACTTTGGCGGAG
ATACCATTGTGCGGACAGACTCGTACGCCTTGACCAAGTTCCCCTGCGACGTCTGAGTTCTCTTCTCTCTCATCT
GGCAGCTCATCTCTCTGGCAAGGTGGCTACGAGCAAGAGGCGCGCATGCTGACGACAAGCTTGCGGCATAGATAT
ATCCGACTGACTTCGGACAAGCCCTCCCAGTCGGGATGGCTGTATTCGCGCGTGCCCCTGACGGCAACGAATTGG
GAGGTGGAAGTCGAGTTCAAGATTTCGGGCAAAAACCACCTCTACGGAGACGGCTTTGCCATGTGGGTGACGAAG
CAGCGTGCCGAGCCGGGCCCCGTCTTTGGCGCGGTGGACAAGTTTGAAGGGCTGGGCATCTTTTTCGACACGTAC
AAGAATAACCGGCCGGGCGTCGTCTTTCCCTACGTCATGGCCATGTTTGGTGACGGGCAGACAACCTACGACAAG
GATACTGACGGCAAGGAGACGGAGCTGGCTGGTTGCTCGGCACGCGGCATCCGACACGCGTCGGTGCCGACCAAG
CTGCGGTTGACGTATATCCAGGACAAGCAGCTGCGGCTCGAGTTACAGCACAAGGCTGAGGACGACTGGCAACTG
TGCTTTGAAAAGGAGCAGCCGCCCGCGATTCCCAACATTGCCTACCTGGGCTTTAGCGCCGAGACGGGCGAGTTG
AGCGATAACCACGACATTATTTCGGTCACGACGAAGAATCTCTACAACAGTCCCGGAGCGCCGGCGAGCGGCAAG
AAGGGCAAGAGCAAGAGCAAGAGCAAAGCCAAAAGCAGTGGCAGTGTTGCGGGCAAGACTGAAGGAAGCTCGTGG
ACGTGGTTCTTTACAAAGATTATCTTTTTCTTCTTGGCGGTGGGGGCGGTGTATGTGGGATATACGGCTTGGAGG
ACAGGAAGTAGGAGTCATCGCTTTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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