Protein ID | OphauG2|2185 |
Gene name | |
Location | Contig_1752:818..2146 |
Strand | - |
Gene length (bp) | 1328 |
Transcript length (bp) | 1224 |
Coding sequence length (bp) | 1224 |
Protein length (aa) | 408 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.9E-13 | 183 | 252 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O74978|YQL5_SCHPO | Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.05c PE=3 SV=1 | 96 | 293 | 4.0E-44 |
sp|Q6GL69|MK67I_XENTR | MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis GN=nifk PE=2 SV=1 | 181 | 326 | 1.0E-30 |
sp|Q8JIY8|MK67I_DANRE | MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio GN=nifk PE=2 SV=2 | 181 | 341 | 2.0E-29 |
sp|Q7SYS2|MK67I_XENLA | MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis GN=nifk PE=2 SV=2 | 181 | 326 | 5.0E-28 |
sp|P53927|NOP15_YEAST | Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP15 PE=1 SV=1 | 181 | 258 | 6.0E-27 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O74978|YQL5_SCHPO | Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.05c PE=3 SV=1 | 96 | 293 | 4.0E-44 |
sp|Q6GL69|MK67I_XENTR | MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis GN=nifk PE=2 SV=1 | 181 | 326 | 1.0E-30 |
sp|Q8JIY8|MK67I_DANRE | MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio GN=nifk PE=2 SV=2 | 181 | 341 | 2.0E-29 |
sp|Q7SYS2|MK67I_XENLA | MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis GN=nifk PE=2 SV=2 | 181 | 326 | 5.0E-28 |
sp|P53927|NOP15_YEAST | Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP15 PE=1 SV=1 | 181 | 258 | 6.0E-27 |
sp|Q3SZM1|MK67I_BOVIN | MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus GN=NIFK PE=2 SV=1 | 181 | 276 | 4.0E-26 |
sp|Q9BYG3|MK67I_HUMAN | MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Homo sapiens GN=NIFK PE=1 SV=1 | 181 | 276 | 3.0E-24 |
sp|Q5RJM0|MK67I_RAT | MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Rattus norvegicus GN=Nifk PE=2 SV=1 | 181 | 274 | 1.0E-22 |
sp|Q91VE6|MK67I_MOUSE | MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Mus musculus GN=Nifk PE=1 SV=1 | 180 | 276 | 1.0E-22 |
sp|P25299|RNA15_YEAST | mRNA 3'-end-processing protein RNA15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNA15 PE=1 SV=1 | 182 | 254 | 1.0E-07 |
sp|Q99383|HRP1_YEAST | Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1 SV=1 | 165 | 259 | 2.0E-07 |
sp|O43040|CTF1_SCHPO | Cleavage and termination factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ctf1 PE=1 SV=1 | 181 | 244 | 3.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003723 | RNA binding | Yes |
GO:0003674 | molecular_function | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0005488 | binding | No |
GO:0003676 | nucleic acid binding | No |
GO:0097159 | organic cyclic compound binding | No |
Orthofinder run ID | 4 |
Orthogroup | 4897 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >OphauG2|2185 MAPELRKRKVLPEAKQDVSTKTKVEGKATTKTKRKAVDEVSPVSLKKQKPAKKTSSQPNKKPAKEAVESKQNQKP AKKTSSQPNKKPAKAAVESKQPKKTAKPVQITKEEEEIAPKSPVDGSASEDEEDGGVLLLADELDSSDDDATDTT SLFKPGQDVGNIPAISAEVCKAAIKPAGERGVIYVGRIPHGFYEYEMRQYMSQFGPITRLRLSRNPKTGASRHFA FIEFEEASTAEIVAKTMNNYLLFGHLLKVKVVPPSELHKDVFKGANTKFKKVPWNKMAGKKLEKPHTKAAWEAKV GKEQVAREEKLAKLKAIGYEFEAPAFKDVPPPAPKIVESEDQETSAIESAPTLSEAVDGAALPKGQVDQTDKAQE TETVTTIPPTKTKAKAKAKTSKSTKSKKRAKA* |
Coding | >OphauG2|2185 ATGGCACCTGAACTCAGGAAACGAAAAGTCCTCCCAGAAGCCAAGCAGGATGTTTCTACAAAAACAAAAGTGGAG GGAAAAGCGACAACAAAGACCAAGCGAAAAGCTGTCGATGAGGTCTCGCCCGTATCGTTGAAGAAGCAAAAGCCA GCCAAAAAGACATCGAGCCAGCCCAACAAAAAACCTGCAAAAGAAGCCGTTGAATCCAAGCAGAACCAAAAGCCA GCCAAAAAGACATCGAGCCAGCCCAACAAAAAGCCTGCAAAAGCAGCCGTTGAATCCAAGCAACCGAAGAAAACT GCCAAACCAGTCCAAATTACAAAGGAGGAGGAAGAGATCGCTCCAAAGTCTCCCGTGGATGGATCAGCATCCGAG GACGAAGAAGACGGGGGCGTTTTGCTGCTGGCTGATGAGCTCGACTCGAGCGACGACGATGCTACCGACACCACG TCCCTGTTCAAGCCCGGGCAGGACGTTGGCAATATACCTGCTATCTCTGCAGAGGTGTGTAAAGCAGCAATAAAG CCAGCGGGTGAGCGAGGCGTCATTTACGTTGGCCGCATCCCACACGGCTTCTATGAGTACGAAATGAGACAATAC ATGTCCCAATTTGGCCCCATCACACGGCTTCGACTCTCGCGCAATCCCAAGACGGGTGCAAGCAGGCATTTCGCC TTTATCGAATTCGAAGAAGCAAGCACAGCCGAAATTGTCGCAAAGACAATGAACAACTACCTGCTCTTTGGGCAT CTTCTCAAGGTCAAAGTGGTGCCTCCAAGTGAGCTGCACAAGGATGTCTTCAAGGGCGCCAACACCAAGTTCAAA AAAGTGCCATGGAACAAGATGGCGGGCAAGAAACTGGAGAAGCCGCATACAAAAGCAGCTTGGGAGGCCAAAGTG GGAAAAGAGCAAGTCGCTCGAGAGGAAAAATTGGCCAAGCTCAAGGCAATTGGCTATGAGTTTGAGGCCCCTGCG TTCAAAGATGTCCCTCCCCCGGCTCCCAAGATAGTGGAGAGTGAGGACCAGGAGACAAGCGCTATTGAGTCGGCT CCAACCTTGAGCGAAGCTGTTGATGGGGCGGCTTTGCCCAAAGGTCAGGTCGACCAGACAGACAAGGCACAAGAG ACAGAGACGGTGACCACAATACCCCCTACAAAGACCAAGGCAAAGGCCAAGGCCAAGACCTCAAAATCTACCAAG TCGAAGAAGAGGGCAAAGGCCTAA |
Transcript | >OphauG2|2185 ATGGCACCTGAACTCAGGAAACGAAAAGTCCTCCCAGAAGCCAAGCAGGATGTTTCTACAAAAACAAAAGTGGAG GGAAAAGCGACAACAAAGACCAAGCGAAAAGCTGTCGATGAGGTCTCGCCCGTATCGTTGAAGAAGCAAAAGCCA GCCAAAAAGACATCGAGCCAGCCCAACAAAAAACCTGCAAAAGAAGCCGTTGAATCCAAGCAGAACCAAAAGCCA GCCAAAAAGACATCGAGCCAGCCCAACAAAAAGCCTGCAAAAGCAGCCGTTGAATCCAAGCAACCGAAGAAAACT GCCAAACCAGTCCAAATTACAAAGGAGGAGGAAGAGATCGCTCCAAAGTCTCCCGTGGATGGATCAGCATCCGAG GACGAAGAAGACGGGGGCGTTTTGCTGCTGGCTGATGAGCTCGACTCGAGCGACGACGATGCTACCGACACCACG TCCCTGTTCAAGCCCGGGCAGGACGTTGGCAATATACCTGCTATCTCTGCAGAGGTGTGTAAAGCAGCAATAAAG CCAGCGGGTGAGCGAGGCGTCATTTACGTTGGCCGCATCCCACACGGCTTCTATGAGTACGAAATGAGACAATAC ATGTCCCAATTTGGCCCCATCACACGGCTTCGACTCTCGCGCAATCCCAAGACGGGTGCAAGCAGGCATTTCGCC TTTATCGAATTCGAAGAAGCAAGCACAGCCGAAATTGTCGCAAAGACAATGAACAACTACCTGCTCTTTGGGCAT CTTCTCAAGGTCAAAGTGGTGCCTCCAAGTGAGCTGCACAAGGATGTCTTCAAGGGCGCCAACACCAAGTTCAAA AAAGTGCCATGGAACAAGATGGCGGGCAAGAAACTGGAGAAGCCGCATACAAAAGCAGCTTGGGAGGCCAAAGTG GGAAAAGAGCAAGTCGCTCGAGAGGAAAAATTGGCCAAGCTCAAGGCAATTGGCTATGAGTTTGAGGCCCCTGCG TTCAAAGATGTCCCTCCCCCGGCTCCCAAGATAGTGGAGAGTGAGGACCAGGAGACAAGCGCTATTGAGTCGGCT CCAACCTTGAGCGAAGCTGTTGATGGGGCGGCTTTGCCCAAAGGTCAGGTCGACCAGACAGACAAGGCACAAGAG ACAGAGACGGTGACCACAATACCCCCTACAAAGACCAAGGCAAAGGCCAAGGCCAAGACCTCAAAATCTACCAAG TCGAAGAAGAGGGCAAAGGCCTAA |
Gene | >OphauG2|2185 ATGGCACCTGAACTCAGGAAACGAAAAGGTAAATTGCAAATTTCATGCTATGGATATATTTTGCTAACTTGGAAT AGTCCTCCCAGAAGCCAAGCAGGATGTTTCTACAAAAACAAAAGTGGAGGGAAAAGCGACAACAAAGACCAAGCG AAAAGGTGAAAGAGACCACACCTTGTAAACTCTCTCGGCTTGCAACTGACCGCCATCTAGCTGTCGATGAGGTCT CGCCCGTATCGTTGAAGAAGCAAAAGCCAGCCAAAAAGACATCGAGCCAGCCCAACAAAAAACCTGCAAAAGAAG CCGTTGAATCCAAGCAGAACCAAAAGCCAGCCAAAAAGACATCGAGCCAGCCCAACAAAAAGCCTGCAAAAGCAG CCGTTGAATCCAAGCAACCGAAGAAAACTGCCAAACCAGTCCAAATTACAAAGGAGGAGGAAGAGATCGCTCCAA AGTCTCCCGTGGATGGATCAGCATCCGAGGACGAAGAAGACGGGGGCGTTTTGCTGCTGGCTGATGAGCTCGACT CGAGCGACGACGATGCTACCGACACCACGTCCCTGTTCAAGCCCGGGCAGGACGTTGGCAATATACCTGCTATCT CTGCAGAGGTGTGTAAAGCAGCAATAAAGCCAGCGGGTGAGCGAGGCGTCATTTACGTTGGCCGCATCCCACACG GCTTCTATGAGTACGAAATGAGACAATACATGTCCCAATTTGGCCCCATCACACGGCTTCGACTCTCGCGCAATC CCAAGACGGGTGCAAGCAGGCATTTCGCCTTTATCGAATTCGAAGAAGCAAGCACAGCCGAAATTGTCGCAAAGA CAATGAACAACTACCTGCTCTTTGGGCATCTTCTCAAGGTCAAAGTGGTGCCTCCAAGTGAGCTGCACAAGGATG TCTTCAAGGGCGCCAACACCAAGTTCAAAAAAGTGCCATGGAACAAGATGGCGGGCAAGAAACTGGAGAAGCCGC ATACAAAAGCAGCTTGGGAGGCCAAAGTGGGAAAAGAGCAAGTCGCTCGAGAGGAAAAATTGGCCAAGCTCAAGG CAATTGGCTATGAGTTTGAGGCCCCTGCGTTCAAAGATGTCCCTCCCCCGGCTCCCAAGATAGTGGAGAGTGAGG ACCAGGAGACAAGCGCTATTGAGTCGGCTCCAACCTTGAGCGAAGCTGTTGATGGGGCGGCTTTGCCCAAAGGTC AGGTCGACCAGACAGACAAGGCACAAGAGACAGAGACGGTGACCACAATACCCCCTACAAAGACCAAGGCAAAGG CCAAGGCCAAGACCTCAAAATCTACCAAGTCGAAGAAGAGGGCAAAGGCCTAA |