Fungal Genomics

at Utrecht University

General Properties

Protein IDOphauG2|2153
Gene name
LocationContig_1735:664..1224
Strand+
Gene length (bp)560
Transcript length (bp)492
Coding sequence length (bp)492
Protein length (aa) 164

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12328 Rpp20 Rpp20 subunit of nuclear RNase MRP and P 2.7E-25 42 158
PF01918 Alba Alba 2.4E-10 43 130

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P38291|POP7_YEAST Ribonucleases P/MRP protein subunit POP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POP7 PE=1 SV=1 14 160 9.0E-10

GO

GO Term Description Terminal node
GO:0003676 nucleic acid binding Yes
GO:0000172 ribonuclease MRP complex Yes
GO:0001682 tRNA 5'-leader removal Yes
GO:0005655 nucleolar ribonuclease P complex Yes
GO:0006396 RNA processing Yes
GO:0009987 cellular process No
GO:0005575 cellular_component No
GO:0008033 tRNA processing No
GO:0034470 ncRNA processing No
GO:0034660 ncRNA metabolic process No
GO:1902555 endoribonuclease complex No
GO:0032991 protein-containing complex No
GO:0006399 tRNA metabolic process No
GO:0008152 metabolic process No
GO:0030677 ribonuclease P complex No
GO:0008150 biological_process No
GO:0030681 multimeric ribonuclease P complex No
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex No
GO:0044238 primary metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0140513 nuclear protein-containing complex No
GO:0090304 nucleic acid metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0044237 cellular metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1990904 ribonucleoprotein complex No
GO:1902494 catalytic complex No
GO:0097159 organic cyclic compound binding No
GO:0046483 heterocycle metabolic process No
GO:0003674 molecular_function No
GO:0000966 RNA 5'-end processing No
GO:0071704 organic substance metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0099116 tRNA 5'-end processing No
GO:0005488 binding No
GO:0043170 macromolecule metabolic process No
GO:1901360 organic cyclic compound metabolic process No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup6456
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|2153 (this protein)
Ophiocordyceps australis map64 (Brazil) OphauB2|837
Ophiocordyceps camponoti-floridani Ophcf2|02658
Ophiocordyceps camponoti-rufipedis Ophun1|6324
Ophiocordyceps kimflemingae Ophio5|2228

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >OphauG2|2153
MADTSPKTAQPAAKNPRAIPGIRVQKRPLLRRQAPASALTPLIYISSSTPFMSAARRISKLLARSQHSGAASKRA
SLQERIEALHKTPSERSGTMTVTAVGAGRAVEKMVALAAWFEQRGEYLVELRTRTTAAVDDVVDDKGEEEDSARV
RMVSALELGICLK*
Coding >OphauG2|2153
ATGGCAGATACAAGCCCCAAGACGGCACAGCCGGCAGCAAAGAACCCGCGCGCCATTCCAGGCATCCGCGTACAA
AAGCGCCCACTACTCCGCCGGCAAGCACCCGCATCAGCTCTGACGCCGCTAATCTACATTTCCTCGTCGACGCCC
TTCATGTCGGCCGCACGGCGCATCTCCAAGCTGCTTGCACGCTCGCAGCACAGCGGCGCGGCATCCAAGCGCGCG
TCACTACAGGAGCGCATCGAGGCGCTGCACAAGACGCCGAGCGAGCGGAGCGGTACCATGACGGTCACGGCTGTG
GGAGCGGGCCGCGCCGTGGAGAAAATGGTGGCGTTGGCGGCGTGGTTTGAGCAGCGGGGGGAGTATCTCGTTGAG
CTGAGGACAAGGACGACAGCGGCGGTGGATGATGTGGTTGACGACAAGGGGGAGGAGGAGGATTCGGCGAGGGTG
CGCATGGTGAGTGCGTTGGAGCTTGGGATTTGTCTCAAGTGA
Transcript >OphauG2|2153
ATGGCAGATACAAGCCCCAAGACGGCACAGCCGGCAGCAAAGAACCCGCGCGCCATTCCAGGCATCCGCGTACAA
AAGCGCCCACTACTCCGCCGGCAAGCACCCGCATCAGCTCTGACGCCGCTAATCTACATTTCCTCGTCGACGCCC
TTCATGTCGGCCGCACGGCGCATCTCCAAGCTGCTTGCACGCTCGCAGCACAGCGGCGCGGCATCCAAGCGCGCG
TCACTACAGGAGCGCATCGAGGCGCTGCACAAGACGCCGAGCGAGCGGAGCGGTACCATGACGGTCACGGCTGTG
GGAGCGGGCCGCGCCGTGGAGAAAATGGTGGCGTTGGCGGCGTGGTTTGAGCAGCGGGGGGAGTATCTCGTTGAG
CTGAGGACAAGGACGACAGCGGCGGTGGATGATGTGGTTGACGACAAGGGGGAGGAGGAGGATTCGGCGAGGGTG
CGCATGGTGAGTGCGTTGGAGCTTGGGATTTGTCTCAAGTGA
Gene >OphauG2|2153
ATGGCAGATACAAGCCCCAAGACGGCACAGCCGGCAGCAAAGAACCCGCGCGCCATTCCAGGTTGCATCTCCCGA
GCTGCTCCCGTTTTGCTGCCTGCTCCCACCCAAAAGGCTAACTCGAGCGGTCAGGCATCCGCGTACAAAAGCGCC
CACTACTCCGCCGGCAAGCACCCGCATCAGCTCTGACGCCGCTAATCTACATTTCCTCGTCGACGCCCTTCATGT
CGGCCGCACGGCGCATCTCCAAGCTGCTTGCACGCTCGCAGCACAGCGGCGCGGCATCCAAGCGCGCGTCACTAC
AGGAGCGCATCGAGGCGCTGCACAAGACGCCGAGCGAGCGGAGCGGTACCATGACGGTCACGGCTGTGGGAGCGG
GCCGCGCCGTGGAGAAAATGGTGGCGTTGGCGGCGTGGTTTGAGCAGCGGGGGGAGTATCTCGTTGAGCTGAGGA
CAAGGACGACAGCGGCGGTGGATGATGTGGTTGACGACAAGGGGGAGGAGGAGGATTCGGCGAGGGTGCGCATGG
TGAGTGCGTTGGAGCTTGGGATTTGTCTCAAGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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