Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|2111
Gene name
Location	Contig_171:12694..15156
Strand	-
Gene length (bp)	2462
Transcript length (bp)	2133
Coding sequence length (bp)	2133
Protein length (aa)	711

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF11935	SYMPK_PTA1_N	Symplekin/PTA1 N-terminal	9.3E-70	90	309

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q10222\|PTA1_SCHPO	mRNA cleavage and polyadenylation specificity factor complex subunit pta1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pta1 PE=1 SV=2	9	660	7.0E-64
sp\|Q92797\|SYMPK_HUMAN	Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2	76	680	3.0E-20
sp\|Q01329\|PTA1_YEAST	Pre-tRNA-processing protein PTA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PTA1 PE=1 SV=1	515	674	2.0E-18
sp\|Q80X82\|SYMPK_MOUSE	Symplekin OS=Mus musculus GN=Sympk PE=1 SV=1	76	680	2.0E-16
sp\|Q8MSU4\|SYMPK_DROME	Symplekin OS=Drosophila melanogaster GN=Sym PE=1 SV=1	74	277	3.0E-10

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q10222\|PTA1_SCHPO	mRNA cleavage and polyadenylation specificity factor complex subunit pta1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pta1 PE=1 SV=2	9	660	7.0E-64
sp\|Q92797\|SYMPK_HUMAN	Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2	76	680	3.0E-20
sp\|Q01329\|PTA1_YEAST	Pre-tRNA-processing protein PTA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PTA1 PE=1 SV=1	515	674	2.0E-18
sp\|Q80X82\|SYMPK_MOUSE	Symplekin OS=Mus musculus GN=Sympk PE=1 SV=1	76	680	2.0E-16
sp\|Q8MSU4\|SYMPK_DROME	Symplekin OS=Drosophila melanogaster GN=Sym PE=1 SV=1	74	277	3.0E-10
sp\|Q01329\|PTA1_YEAST	Pre-tRNA-processing protein PTA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PTA1 PE=1 SV=1	74	244	1.0E-09
sp\|Q7ZYV9\|SYMPK_XENLA	Symplekin OS=Xenopus laevis GN=sympk PE=1 SV=1	487	661	1.0E-07
sp\|Q7ZYV9\|SYMPK_XENLA	Symplekin OS=Xenopus laevis GN=sympk PE=1 SV=1	45	273	9.0E-07

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 18	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|2111 MASTLSVSEQIRQLNDARKLVLGDVKYYPSVVKGILPIIGPSAPVDLRRWGTDFLAEAFSTPALPNGEKETMQPY VLATLQSLVDDEREDAHVLRSVIQTAASIYPLALRWIINNGYDTVTWDKMTAVKQRILHIWDNAVPSVRICCIKF AQRVILAQSVAASPDLRHGGSLDVSLDKVPPSHQILDARSLEAEAMGLLDRMLGTLQESSDALLVDATLNCLSIM VRTRPAMSGRILSALLNFNPLQAATSPLTPKSRVIVRSMEKTARMLLIHLSKRDTRNALIPRIHQHVERTMRAVA ELFDDVGKKRPLEAHQSNGVDAKRQRTIGPHVPIQPLGPGPHTLGDVFTLISNPDLKNFDISQLPHSVVAKVSVI ALAGLDKDALTKAVDGVRGRLDELANAPAPELNPNTAPLGVDDDDDDYEPDFYPAEDTEQILNKLDGASPKVPEE AGGLALVSFSLGQPVELTAETALSAGSGTITRVLESIKSLEEPAARKEKAGFNRLAASSGGREGWMSILTRLATR ASVGLEEQEVKDETGRHEQTPLLSTVIREVMYDFVMEDFRKRIDVAVSWLCEEWYNDQIRKRTGDDEVGNYEKCA LRLLDGFLPYLNPQDKVLTRFLGEAPDLNRAMLSRVKDMCRDPSVTQLALTSLLYLAMMRPPAKEIALDTVQDIW TDFEDARPMASKYLVKYRPEFLDEAAAAAAAAVTA*
Coding	>OphauG2\|2111 ATGGCTTCGACGCTGTCGGTATCAGAGCAGATTCGCCAGCTCAACGATGCCCGCAAGCTGGTGCTTGGCGATGTC AAATACTACCCGAGCGTTGTCAAAGGCATCCTGCCCATTATTGGGCCATCAGCTCCAGTCGACCTGCGACGATGG GGCACCGATTTCCTTGCCGAGGCCTTTTCCACGCCCGCGCTGCCCAATGGCGAAAAGGAGACGATGCAACCATAT GTGCTCGCGACGCTGCAGTCGCTCGTTGATGATGAGCGCGAAGACGCGCACGTGCTGCGCAGCGTCATCCAAACC GCTGCCAGCATATACCCGCTTGCCCTGCGCTGGATCATCAACAACGGATACGACACGGTTACTTGGGACAAGATG ACTGCCGTCAAGCAGAGAATCCTACACATATGGGACAATGCGGTACCTTCGGTGCGCATATGCTGCATCAAGTTT GCTCAGCGCGTCATTCTGGCCCAAAGCGTAGCTGCAAGTCCCGACCTGAGGCACGGCGGTTCACTCGACGTATCT CTGGACAAGGTGCCACCGAGCCATCAAATTCTCGACGCCCGCAGCCTCGAGGCCGAAGCCATGGGTCTGCTGGAT CGGATGCTGGGGACCTTGCAGGAAAGCAGCGATGCTCTCCTGGTAGATGCGACGCTCAACTGTCTGTCCATCATG GTTCGCACGCGGCCAGCCATGTCGGGGCGCATCCTCAGCGCACTGCTCAACTTCAACCCGCTGCAAGCAGCCACG TCGCCCCTGACGCCCAAGTCGCGCGTCATTGTCAGATCGATGGAGAAGACGGCGCGGATGCTGCTAATTCACCTC AGCAAAAGAGATACGCGCAATGCGCTAATACCACGGATTCACCAGCATGTTGAGCGCACAATGCGTGCCGTGGCC GAGCTGTTTGATGACGTGGGCAAGAAGAGGCCCTTGGAGGCTCATCAAAGCAATGGGGTGGATGCCAAACGCCAA CGCACCATTGGGCCACATGTGCCAATCCAACCCCTGGGTCCCGGTCCACATACCCTCGGCGACGTGTTCACTCTC ATCAGCAACCCGGACCTCAAAAACTTTGACATTTCTCAGCTGCCGCACAGCGTCGTGGCCAAGGTGTCGGTGATT GCATTGGCCGGGCTAGATAAAGATGCCTTGACCAAAGCCGTGGATGGTGTCCGTGGCCGTCTTGATGAGCTGGCA AATGCGCCAGCGCCAGAACTGAACCCCAATACTGCACCACTGGGCGTTGACGACGACGACGATGACTACGAACCA GACTTTTATCCCGCCGAGGACACGGAACAGATACTCAACAAACTAGACGGGGCGTCGCCAAAGGTGCCCGAGGAA GCAGGCGGCCTGGCGCTTGTTTCATTTAGCCTCGGCCAGCCGGTGGAGCTTACGGCCGAGACAGCACTTAGTGCA GGAAGCGGAACCATTACGCGGGTGTTGGAATCGATCAAGTCGCTGGAGGAGCCAGCAGCGCGCAAGGAAAAGGCG GGCTTCAACCGACTAGCTGCCAGTTCTGGGGGCCGCGAAGGCTGGATGTCGATTTTAACGCGGTTAGCAACCCGT GCCTCGGTCGGGCTCGAGGAGCAAGAGGTCAAGGATGAAACGGGGCGACATGAGCAGACGCCATTGCTAAGCACT GTGATACGAGAGGTCATGTATGACTTTGTCATGGAGGATTTTCGAAAGCGCATTGATGTGGCCGTCTCGTGGCTG TGCGAAGAATGGTACAACGACCAAATCAGGAAACGGACAGGCGACGACGAGGTTGGAAACTACGAAAAGTGTGCG CTGCGGCTGCTCGACGGGTTCTTGCCCTATCTAAACCCCCAGGACAAGGTGTTGACGCGTTTTCTCGGAGAGGCG CCTGACCTCAACCGCGCCATGCTATCGCGGGTCAAGGACATGTGTCGAGACCCCAGTGTGACGCAACTGGCCTTG ACGAGTCTGTTGTATCTGGCAATGATGCGTCCACCGGCCAAGGAGATTGCGCTAGATACGGTGCAGGATATATGG ACCGACTTTGAAGATGCACGGCCCATGGCGTCCAAGTATCTGGTAAAGTATCGACCCGAGTTTCTGGACGAGGCG GCAGCAGCAGCAGCAGCAGCAGTGACGGCATGA
Transcript	>OphauG2\|2111 ATGGCTTCGACGCTGTCGGTATCAGAGCAGATTCGCCAGCTCAACGATGCCCGCAAGCTGGTGCTTGGCGATGTC AAATACTACCCGAGCGTTGTCAAAGGCATCCTGCCCATTATTGGGCCATCAGCTCCAGTCGACCTGCGACGATGG GGCACCGATTTCCTTGCCGAGGCCTTTTCCACGCCCGCGCTGCCCAATGGCGAAAAGGAGACGATGCAACCATAT GTGCTCGCGACGCTGCAGTCGCTCGTTGATGATGAGCGCGAAGACGCGCACGTGCTGCGCAGCGTCATCCAAACC GCTGCCAGCATATACCCGCTTGCCCTGCGCTGGATCATCAACAACGGATACGACACGGTTACTTGGGACAAGATG ACTGCCGTCAAGCAGAGAATCCTACACATATGGGACAATGCGGTACCTTCGGTGCGCATATGCTGCATCAAGTTT GCTCAGCGCGTCATTCTGGCCCAAAGCGTAGCTGCAAGTCCCGACCTGAGGCACGGCGGTTCACTCGACGTATCT CTGGACAAGGTGCCACCGAGCCATCAAATTCTCGACGCCCGCAGCCTCGAGGCCGAAGCCATGGGTCTGCTGGAT CGGATGCTGGGGACCTTGCAGGAAAGCAGCGATGCTCTCCTGGTAGATGCGACGCTCAACTGTCTGTCCATCATG GTTCGCACGCGGCCAGCCATGTCGGGGCGCATCCTCAGCGCACTGCTCAACTTCAACCCGCTGCAAGCAGCCACG TCGCCCCTGACGCCCAAGTCGCGCGTCATTGTCAGATCGATGGAGAAGACGGCGCGGATGCTGCTAATTCACCTC AGCAAAAGAGATACGCGCAATGCGCTAATACCACGGATTCACCAGCATGTTGAGCGCACAATGCGTGCCGTGGCC GAGCTGTTTGATGACGTGGGCAAGAAGAGGCCCTTGGAGGCTCATCAAAGCAATGGGGTGGATGCCAAACGCCAA CGCACCATTGGGCCACATGTGCCAATCCAACCCCTGGGTCCCGGTCCACATACCCTCGGCGACGTGTTCACTCTC ATCAGCAACCCGGACCTCAAAAACTTTGACATTTCTCAGCTGCCGCACAGCGTCGTGGCCAAGGTGTCGGTGATT GCATTGGCCGGGCTAGATAAAGATGCCTTGACCAAAGCCGTGGATGGTGTCCGTGGCCGTCTTGATGAGCTGGCA AATGCGCCAGCGCCAGAACTGAACCCCAATACTGCACCACTGGGCGTTGACGACGACGACGATGACTACGAACCA GACTTTTATCCCGCCGAGGACACGGAACAGATACTCAACAAACTAGACGGGGCGTCGCCAAAGGTGCCCGAGGAA GCAGGCGGCCTGGCGCTTGTTTCATTTAGCCTCGGCCAGCCGGTGGAGCTTACGGCCGAGACAGCACTTAGTGCA GGAAGCGGAACCATTACGCGGGTGTTGGAATCGATCAAGTCGCTGGAGGAGCCAGCAGCGCGCAAGGAAAAGGCG GGCTTCAACCGACTAGCTGCCAGTTCTGGGGGCCGCGAAGGCTGGATGTCGATTTTAACGCGGTTAGCAACCCGT GCCTCGGTCGGGCTCGAGGAGCAAGAGGTCAAGGATGAAACGGGGCGACATGAGCAGACGCCATTGCTAAGCACT GTGATACGAGAGGTCATGTATGACTTTGTCATGGAGGATTTTCGAAAGCGCATTGATGTGGCCGTCTCGTGGCTG TGCGAAGAATGGTACAACGACCAAATCAGGAAACGGACAGGCGACGACGAGGTTGGAAACTACGAAAAGTGTGCG CTGCGGCTGCTCGACGGGTTCTTGCCCTATCTAAACCCCCAGGACAAGGTGTTGACGCGTTTTCTCGGAGAGGCG CCTGACCTCAACCGCGCCATGCTATCGCGGGTCAAGGACATGTGTCGAGACCCCAGTGTGACGCAACTGGCCTTG ACGAGTCTGTTGTATCTGGCAATGATGCGTCCACCGGCCAAGGAGATTGCGCTAGATACGGTGCAGGATATATGG ACCGACTTTGAAGATGCACGGCCCATGGCGTCCAAGTATCTGGTAAAGTATCGACCCGAGTTTCTGGACGAGGCG GCAGCAGCAGCAGCAGCAGCAGTGACGGCATGA
Gene	>OphauG2\|2111 ATGGCTTCGACGCTGTCGGTATCAGAGCAGATTCGCCAGCTCAACGATGCCCGCAAGCTGGTGCTTGGCGATGTC AAATACTACCCGAGCGTTGTCAAAGGCATCCTGCCCATTATTGGGCCATCAGCTCCAGTCGACCTGCGACGATGG GGCACCGATTTCCTTGCCGAGGCCTTTTCCACGCCCGCGCTGCCCAATGGCGAAAAGGAGACGATGCAACCATAT GTGCTCGCGACGCTGCAGTCGCTCGTTGATGATGAGCGCGAAGACGCGCACGTGCTGCGCAGCGTCATCCAAACC GCTGCCAGCATATACCCGCTTGCCCTGCGCTGGATGTGCGTAGTCCTGACCTGTTTGATTGCCTTGGGACTCTGG CACTGATGATGGATCGTAGCATCAACAACGGATACGACACGGTTACTTGGGACAAGATGACTGCCGTCAAGCAGA GAATCCTACACATATGGGACAATGCGGTACCTTCGGTGCGCATATGCTGCATCAAGTTTGCTCAGCGCGTCATTC TGGCCCAAAGCGTAGCTGCAAGTCCCGACCTGAGGGTGCGTTTGCGCTGCCCATGATATGCCTCTTGCCTACTTG GTGCTAAACCACGCTTACAGCACGGCGGTTCACTCGACGTATCTCTGGACAAGGTGCCACCGAGCCATCAAATTC TCGACGCCCGCAGCCTCGAGGCCGAAGCCATGGGTCTGCTGGATCGGATGCTGGGGACCTTGCAGGAAAGCAGGT AAAGTTTTCCCATGCTCGTTTTCGCCCTCAGTTTCTGGCTGCCAACTTGAACCCTTCCGTCATGTGACAAGCGAG GGCTCACGCTGGTGTTTTGGTAGCGATGCTCTCCTGGTAGATGCGACGCTCAACTGTCTGTCCATCATGGTTCGC ACGCGGCCAGCCATGTCGGGGCGCATCCTCAGCGCACTGCTCAACTTCAACCCGCTGCAAGCAGCCACGTCGCCC CTGACGCCCAAGTCGCGCGTCATTGTCAGATCGATGGAGAAGACGGCGCGGATGCTGCTAATTCACCTCAGCAAA AGAGATACGCGCAATGCGCTAATACCACGGATTCACCAGCATGTTGAGCGCACAATGCGTGCCGTGGCCGAGCTG TTTGATGACGTGGGCAAGAAGAGGCCCTTGGAGGCTCATCAAAGCAATGGGGTGGATGCCAAACGCCAACGCACC ATTGGGCCACATGTGCCAATCCAACCCCTGGGTCCCGGTCCACATACCCTCGGCGACGTGTTCACTCTCATCAGC AACCCGGACCTCAAAAACTTTGACATTTCTCAGCTGCCGCACAGCGTCGTGGCCAAGGTGTCGGTGATTGCATTG GCCGGGCTAGATAAAGATGCCTTGACCAAAGCCGTGGATGGTGTCCGTGGCCGTCTTGATGAGCTGGCAAATGCG CCAGCGCCAGAACTGAACCCCAATACTGCACCACTGGGCGTTGACGACGACGACGATGACTACGAACCAGACTTT TATCCCGCCGAGGACACGGAACAGATACTCAACAAACTAGACGGGGCGTCGCCAAAGGTGCCCGAGGAAGCAGGC GGCCTGGCGCTTGTTTCATTTAGCCTCGGCCAGCCGGTGGAGCTTACGGCCGAGACAGCACTTAGTGCAGGAAGC GGAACCATTACGCGGGTGTTGGAATCGATCAAGTCGCTGGAGGAGCCAGCAGCGCGCAAGGAAAAGGCGGGCTTC AACCGACTAGCTGCCAGTTCTGGGGGCCGCGAAGGCTGGATGTCGATTTTAACGCGGTTAGCAACCCGTGCCTCG GTCGGGCTCGAGGAGCAAGAGGTCAAGGATGAAACGGGGCGACATGAGCAGACGCCATTGCTAAGCACTGTGATA CGAGAGGTCATGTATGACTTTGTCATGGAGGATTTTCGAAAGCGCATTGATGTGGCCGTCTCGTGGCTGTGCGAA GAATGGTACAACGACCAAATCAGGAAACGGACAGGCGACGACGAGGTTGGAAACTACGAAAAGTGTGCGCTGCGG CTGCTCGACGGGTTCTTGCCCTATCTAAACCCCCAGGACAAGGTGTTGACGCGTTTTCTCGGAGAGGCGCCTGAC CTCAACCGCGCCATGCTATCGCGGGTCAAGGACATGTGTCGAGACCCCAGTGTGACGCAACTGGCCTTGACGAGT CTGTTGTATCTGGCAATGATGCGTCCACCGGCCAAGGAGATTGCGCTAGATACGGTGCAGGATATATGGACCGAC TGTAAGTCTTTTTCACTCTCGCCCTGCTGCTCCTCTCTTTTTCTTCTTGTCCGAGGTGTCATGCAGAGATTAGCT GCCCTGGATTGTTGCTCTTGCTAATTACGGGGATAGTTGAAGATGCACGGCCCATGGCGTCCAAGTATCTGGTAA AGTATCGACCCGAGTTTCTGGACGAGGCGGCAGCAGCAGCAGCAGCAGCAGTGACGGCATGA

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