© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|2098 |
| Gene name | |
| Location | Contig_170:25002..26151 |
| Strand | + |
| Gene length (bp) | 1149 |
| Transcript length (bp) | 969 |
| Coding sequence length (bp) | 969 |
| Protein length (aa) | 323 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03878 | YIF1 | YIF1 | 1.1E-100 | 68 | 320 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87148|YIF1_SCHPO | Protein transport protein yif1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hrf1 PE=3 SV=1 | 10 | 320 | 7.0E-80 |
| sp|Q3T196|YIF1A_BOVIN | Protein YIF1A OS=Bos taurus GN=YIF1A PE=2 SV=1 | 28 | 284 | 8.0E-47 |
| sp|O95070|YIF1A_HUMAN | Protein YIF1A OS=Homo sapiens GN=YIF1A PE=1 SV=2 | 28 | 284 | 2.0E-44 |
| sp|Q5U3G6|YIF1B_DANRE | Protein YIF1B OS=Danio rerio GN=yif1b PE=2 SV=2 | 25 | 320 | 9.0E-44 |
| sp|Q6PC24|YIF1A_DANRE | Protein YIF1A OS=Danio rerio GN=yif1a PE=2 SV=1 | 28 | 287 | 2.0E-42 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P87148|YIF1_SCHPO | Protein transport protein yif1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hrf1 PE=3 SV=1 | 10 | 320 | 7.0E-80 |
| sp|Q3T196|YIF1A_BOVIN | Protein YIF1A OS=Bos taurus GN=YIF1A PE=2 SV=1 | 28 | 284 | 8.0E-47 |
| sp|O95070|YIF1A_HUMAN | Protein YIF1A OS=Homo sapiens GN=YIF1A PE=1 SV=2 | 28 | 284 | 2.0E-44 |
| sp|Q5U3G6|YIF1B_DANRE | Protein YIF1B OS=Danio rerio GN=yif1b PE=2 SV=2 | 25 | 320 | 9.0E-44 |
| sp|Q6PC24|YIF1A_DANRE | Protein YIF1A OS=Danio rerio GN=yif1a PE=2 SV=1 | 28 | 287 | 2.0E-42 |
| sp|Q4FZQ0|YF1BB_XENLA | Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1 | 67 | 320 | 4.0E-41 |
| sp|Q6GN58|YF1BA_XENLA | Protein YIF1B-A OS=Xenopus laevis GN=yif1b-a PE=2 SV=1 | 67 | 320 | 7.0E-41 |
| sp|Q6P301|YIF1B_XENTR | Protein YIF1B OS=Xenopus tropicalis GN=yif1b PE=2 SV=1 | 25 | 320 | 1.0E-40 |
| sp|Q91XB7|YIF1A_MOUSE | Protein YIF1A OS=Mus musculus GN=Yif1a PE=1 SV=1 | 28 | 284 | 1.0E-40 |
| sp|Q5BJH7|YIF1B_HUMAN | Protein YIF1B OS=Homo sapiens GN=YIF1B PE=1 SV=1 | 35 | 320 | 2.0E-40 |
| sp|Q9CX30|YIF1B_MOUSE | Protein YIF1B OS=Mus musculus GN=Yif1b PE=1 SV=2 | 27 | 320 | 1.0E-39 |
| sp|P53845|YIF1_YEAST | Protein transport protein YIF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIF1 PE=1 SV=1 | 13 | 319 | 5.0E-33 |
| sp|Q6PEC3|YIF1B_RAT | Protein YIF1B OS=Rattus norvegicus GN=Yif1b PE=2 SV=2 | 27 | 181 | 5.0E-19 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | Yes |
| GO:0005789 | endoplasmic reticulum membrane | Yes |
| GO:0051649 | establishment of localization in cell | No |
| GO:0051234 | establishment of localization | No |
| GO:0051641 | cellular localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0046907 | intracellular transport | No |
| GO:0016020 | membrane | No |
| GO:0031090 | organelle membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0009987 | cellular process | No |
| GO:0048193 | Golgi vesicle transport | No |
| GO:0016192 | vesicle-mediated transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 159 | 181 | 22 |
| 2 | 191 | 213 | 22 |
| 3 | 220 | 242 | 22 |
| 4 | 252 | 269 | 17 |
| 5 | 303 | 320 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|2098 MQRSSYGQSPPLHHPVPQHVSTVPQLRSPPPPPGSAQSQQQQTYGGTPYQQPPAAGATMFGAYGNIMNDPTAHVA AQFGQTAFRHGQEYVEQNFGRYVNVSALKHYFNVSNFYVVNKLFLVLFPWRHKPWSRKQAVGANGAEGWYLPPRE DINSPDMYIPVMALVTFILLSTLLAGLRGQFQPELLGYTATTGLAIVVVELVALKLGCYLLSISSQSQLFDLIAY SGYKFVGIIITIVVAEIFNRGKGTGGWVGWLVFIYTFLANSLFLMRSLKYVLLPETSGGTGGPMQTDSRAKRNQR TQFLFFYSYIVQFFFMWTLTRV* |
| Coding | >OphauG2|2098 ATGCAGCGCTCCTCGTACGGGCAGTCGCCCCCGTTGCATCATCCCGTCCCCCAACACGTCTCGACGGTGCCGCAG CTTCGATCTCCCCCTCCCCCTCCCGGATCGGCCCAATCCCAGCAGCAACAGACCTATGGCGGCACGCCCTACCAG CAGCCGCCCGCCGCGGGTGCCACCATGTTTGGCGCCTATGGCAACATCATGAACGACCCCACGGCCCATGTGGCG GCCCAGTTTGGCCAGACAGCCTTTAGACACGGCCAGGAGTACGTCGAGCAGAATTTTGGCCGCTACGTCAATGTA TCAGCCCTCAAACACTACTTCAACGTGTCCAACTTTTACGTGGTCAACAAGCTCTTTCTCGTCCTCTTCCCCTGG CGCCACAAACCCTGGTCGCGCAAGCAAGCCGTTGGAGCCAATGGCGCCGAGGGATGGTATCTGCCGCCGCGAGAG GACATCAACAGCCCCGACATGTACATTCCAGTCATGGCTCTCGTCACCTTTATCCTTCTATCGACACTGCTCGCC GGACTAAGGGGTCAGTTTCAGCCCGAGCTCCTGGGATACACTGCAACAACAGGTCTCGCCATTGTCGTTGTCGAG CTCGTTGCCCTCAAACTGGGGTGCTATCTGTTAAGCATCTCGAGCCAGTCTCAGCTTTTTGATCTAATTGCGTAT TCGGGCTACAAGTTTGTCGGCATAATCATCACCATTGTTGTGGCCGAGATATTCAACAGAGGCAAGGGCACTGGA GGCTGGGTCGGCTGGCTCGTCTTTATCTATACCTTTTTGGCCAACTCGCTATTTCTGATGCGGTCTCTGAAATAT GTTCTTCTGCCCGAAACTTCTGGCGGTACGGGGGGGCCAATGCAGACCGACTCGCGGGCAAAGCGTAACCAGAGG ACACAGTTTCTGTTTTTTTACTCGTACATTGTACAGTTCTTTTTCATGTGGACGCTTACAAGAGTGTAA |
| Transcript | >OphauG2|2098 ATGCAGCGCTCCTCGTACGGGCAGTCGCCCCCGTTGCATCATCCCGTCCCCCAACACGTCTCGACGGTGCCGCAG CTTCGATCTCCCCCTCCCCCTCCCGGATCGGCCCAATCCCAGCAGCAACAGACCTATGGCGGCACGCCCTACCAG CAGCCGCCCGCCGCGGGTGCCACCATGTTTGGCGCCTATGGCAACATCATGAACGACCCCACGGCCCATGTGGCG GCCCAGTTTGGCCAGACAGCCTTTAGACACGGCCAGGAGTACGTCGAGCAGAATTTTGGCCGCTACGTCAATGTA TCAGCCCTCAAACACTACTTCAACGTGTCCAACTTTTACGTGGTCAACAAGCTCTTTCTCGTCCTCTTCCCCTGG CGCCACAAACCCTGGTCGCGCAAGCAAGCCGTTGGAGCCAATGGCGCCGAGGGATGGTATCTGCCGCCGCGAGAG GACATCAACAGCCCCGACATGTACATTCCAGTCATGGCTCTCGTCACCTTTATCCTTCTATCGACACTGCTCGCC GGACTAAGGGGTCAGTTTCAGCCCGAGCTCCTGGGATACACTGCAACAACAGGTCTCGCCATTGTCGTTGTCGAG CTCGTTGCCCTCAAACTGGGGTGCTATCTGTTAAGCATCTCGAGCCAGTCTCAGCTTTTTGATCTAATTGCGTAT TCGGGCTACAAGTTTGTCGGCATAATCATCACCATTGTTGTGGCCGAGATATTCAACAGAGGCAAGGGCACTGGA GGCTGGGTCGGCTGGCTCGTCTTTATCTATACCTTTTTGGCCAACTCGCTATTTCTGATGCGGTCTCTGAAATAT GTTCTTCTGCCCGAAACTTCTGGCGGTACGGGGGGGCCAATGCAGACCGACTCGCGGGCAAAGCGTAACCAGAGG ACACAGTTTCTGTTTTTTTACTCGTACATTGTACAGTTCTTTTTCATGTGGACGCTTACAAGAGTGTAA |
| Gene | >OphauG2|2098 ATGCAGCGCTCCTCGTACGGGCAGTCGCCCCCGTTGCATCATCCCGTCCCCCAACACGTCTCGACGGTGCCGCAG CTTCGATCTCCCCCTCCCCCTCCCGGATCGGCCCAATCCCAGCAGCAACAGACCTATGGCGGCACGCCCTACCAG CAGCCGCCCGCCGCGGGTGCCACCATGTTTGGCGCCTATGGCAACATCATGAACGACCCCACGGCCCATGTGGCG GCCCAGTTTGGCCAGACAGCCTTTAGACACGGCCAGGAGTACGTCGAGCAGAATGTACGATGCCGCTCCAGCCAG CCCCGCGCCCATGTTGTTCTGTAGTCGCTGACCCTGGCCATAGTTTGGCCGCTACGTCAATGTATCAGCCCTCAA ACACTACTTCAACGTGTCCAACTTTTACGTGGTCAACAAGCTCTTTCTCGTCCTCTTCCCCTGGCGCCACAAACC CTGGTCGCGCAAGCAAGCCGTTGGAGCCAATGGCGCCGAGGGATGGTATCTGCCGCCGCGAGAGGACATCAACAG CCCCGACATGTACATTCCAGGTCAGTATCGCCCACCAGCGCCCCATCTGCTCGACCAGGGCTGACGCACACCACA GTCATGGCTCTCGTCACCTTTATCCTTCTATCGACACTGCTCGCCGGACTAAGGGGTCAGTTTCAGCCCGAGCTC CTGGGATACACTGCAACAACAGGTCTCGCCATTGTCGTTGTCGAGCTCGTTGCCCTCAAACTGGGGTGCTATCTG TTAAGCATCTCGAGCCAGTCTCAGCTTTTTGATCTAATTGCGTATTCGGGCTACAAGTTTGTCGGCATAATCATC ACCATTGTTGTGGCCGAGATATTCAACAGAGGCAAGGGCACTGGAGGCTGGGTCGGCTGGCTCGTCTTTATCTAT ACCTTTTTGGCCAACTCGCTATTTCTGGTATGTCTGCTTGCTGTCCCGGCCCGCTCATGTGTCTGGCAACTTACC CATGGCCTCCAGATGCGGTCTCTGAAATATGTTCTTCTGCCCGAAACTTCTGGCGGTACGGGGGGGCCAATGCAG ACCGACTCGCGGGCAAAGCGTAACCAGAGGACACAGTTTCTGTTTTTTTACTCGTACATTGTACAGTTCTTTTTC ATGTGGACGCTTACAAGAGTGTAA |