Protein ID | OphauG2|2009 |
Gene name | |
Location | Contig_1669:90..1934 |
Strand | + |
Gene length (bp) | 1844 |
Transcript length (bp) | 1704 |
Coding sequence length (bp) | 1704 |
Protein length (aa) | 568 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF09779 | Ima1_N | Ima1 N-terminal domain | 1.0E-24 | 10 | 130 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O13681|IINMP_SCHPO | Integral inner nuclear membrane protein ima1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=IMA1 PE=4 SV=2 | 10 | 405 | 3.0E-15 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 191 | 213 | 22 |
2 | 248 | 267 | 19 |
3 | 282 | 299 | 17 |
4 | 536 | 558 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2573 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >OphauG2|2009 MVSFRASGQLACFYCGQQSSSQAAPGRKHSFVCGHCDATNYLDADGGIMDPPVATERESAPKRYVARGAGGGDET VFCSRCLENQHLFTRCLAQYSNNREDFVLNREYYSFRKQQEQRYPQVCDACAVKVQQRILRAGYTAKTDHLRRMM DMSRGKRIMTTEPTRLDYVSAIGRATWRAGFVLEMLWHAKAVVFVLANSMPLSAALVDLLAYLPATHRLASWSIA AAFASAWWNPHFVQVNRGFTRHLLGLTQWYCFQGLIIFFRLASRGLLSMNQSKDACLSAHLAMAVVMMLMHVYAH KSIRVDTSMLFSWNNASSIPPPSPRTAKENDCKTFSQLVDETLESASPQSQARHRGTAATGHRVAVHTPVHRRPR APEPDEMDWSPMAAPHRALLNQHNATRNAPDLGANPFRYPVPPAPFNPANRAWGRPLEAQEPQQSIPPAKASLEF GRHGNPVWQPSVSSHAGVEFKPPSFFAQPSMDDDNSLAALLDRSFTISQPHGHDSGEETEVEDRVQQVSARIPGI RLPAARKKQKLLCGVLSYEWLLLMVMLGTWMLSTPRRAMGST* |
Coding | >OphauG2|2009 ATGGTGAGCTTCCGCGCGTCGGGGCAGCTGGCCTGCTTTTACTGCGGGCAGCAGTCGTCAAGCCAAGCAGCACCA GGGCGCAAGCACAGCTTTGTGTGCGGGCACTGCGATGCGACCAACTACCTAGACGCAGACGGCGGCATCATGGAC CCGCCTGTTGCGACGGAGCGAGAAAGCGCGCCAAAGCGATATGTTGCTCGTGGGGCGGGCGGGGGAGACGAGACG GTGTTTTGCTCAAGGTGCCTGGAGAACCAGCATCTGTTTACGCGGTGTCTTGCGCAGTACTCAAACAACCGCGAG GACTTTGTGCTGAATCGCGAATACTATAGCTTCCGCAAACAACAGGAGCAGCGCTATCCCCAGGTGTGCGACGCG TGTGCCGTCAAGGTGCAGCAGCGCATCCTCAGGGCGGGCTACACGGCCAAGACGGACCACCTGCGCCGCATGATG GACATGAGCCGCGGCAAACGCATCATGACGACGGAACCCACACGCCTCGACTACGTCAGTGCCATTGGGCGCGCC ACCTGGCGAGCTGGCTTTGTGCTTGAGATGCTGTGGCATGCCAAGGCTGTTGTCTTTGTCTTGGCCAACTCGATG CCGCTTTCTGCCGCCCTTGTCGACCTCTTGGCCTATCTGCCTGCTACACACCGCCTTGCTAGCTGGAGCATTGCT GCCGCCTTTGCTTCTGCTTGGTGGAATCCGCATTTTGTCCAGGTCAACCGCGGCTTCACCAGGCATCTTTTGGGC CTGACGCAATGGTACTGCTTCCAGGGCCTCATCATCTTTTTCCGCCTGGCCTCGCGCGGCCTGCTCAGCATGAAT CAATCCAAAGACGCCTGCCTAAGTGCTCATTTGGCCATGGCAGTCGTCATGATGCTGATGCATGTCTACGCCCAC AAGTCGATTCGCGTCGACACCTCGATGCTCTTTTCCTGGAACAATGCCTCGTCGATTCCTCCGCCCTCTCCCCGC ACCGCCAAGGAGAATGACTGCAAGACCTTTTCGCAGCTTGTTGACGAAACGCTCGAGTCGGCCAGTCCACAGTCC CAAGCCCGCCACCGTGGCACTGCTGCGACTGGGCATCGTGTTGCCGTCCACACTCCAGTCCATCGTCGGCCTCGG GCCCCAGAACCGGACGAGATGGACTGGTCGCCCATGGCCGCGCCGCACCGCGCCTTGTTGAACCAGCACAATGCG ACAAGAAACGCGCCCGACCTGGGGGCCAACCCTTTTCGATACCCCGTGCCGCCCGCACCCTTCAACCCGGCCAAC CGTGCCTGGGGGAGGCCGTTGGAAGCACAGGAGCCACAGCAAAGCATCCCCCCGGCAAAGGCCAGCCTTGAATTC GGCAGACACGGCAACCCTGTGTGGCAGCCATCCGTCTCGTCGCATGCCGGCGTGGAGTTCAAGCCACCGTCGTTT TTTGCGCAGCCAAGCATGGACGACGACAACTCGCTGGCCGCGCTGCTGGACCGCAGCTTCACCATCAGCCAGCCG CATGGCCACGACTCGGGAGAAGAGACCGAGGTGGAGGACCGAGTCCAGCAAGTGTCTGCGCGAATACCAGGCATA CGTTTGCCTGCTGCCAGGAAGAAGCAGAAGCTGTTGTGTGGCGTCTTGTCGTACGAGTGGCTACTGCTGATGGTG ATGCTGGGCACTTGGATGCTCAGCACGCCGAGACGCGCAATGGGATCTACTTGA |
Transcript | >OphauG2|2009 ATGGTGAGCTTCCGCGCGTCGGGGCAGCTGGCCTGCTTTTACTGCGGGCAGCAGTCGTCAAGCCAAGCAGCACCA GGGCGCAAGCACAGCTTTGTGTGCGGGCACTGCGATGCGACCAACTACCTAGACGCAGACGGCGGCATCATGGAC CCGCCTGTTGCGACGGAGCGAGAAAGCGCGCCAAAGCGATATGTTGCTCGTGGGGCGGGCGGGGGAGACGAGACG GTGTTTTGCTCAAGGTGCCTGGAGAACCAGCATCTGTTTACGCGGTGTCTTGCGCAGTACTCAAACAACCGCGAG GACTTTGTGCTGAATCGCGAATACTATAGCTTCCGCAAACAACAGGAGCAGCGCTATCCCCAGGTGTGCGACGCG TGTGCCGTCAAGGTGCAGCAGCGCATCCTCAGGGCGGGCTACACGGCCAAGACGGACCACCTGCGCCGCATGATG GACATGAGCCGCGGCAAACGCATCATGACGACGGAACCCACACGCCTCGACTACGTCAGTGCCATTGGGCGCGCC ACCTGGCGAGCTGGCTTTGTGCTTGAGATGCTGTGGCATGCCAAGGCTGTTGTCTTTGTCTTGGCCAACTCGATG CCGCTTTCTGCCGCCCTTGTCGACCTCTTGGCCTATCTGCCTGCTACACACCGCCTTGCTAGCTGGAGCATTGCT GCCGCCTTTGCTTCTGCTTGGTGGAATCCGCATTTTGTCCAGGTCAACCGCGGCTTCACCAGGCATCTTTTGGGC CTGACGCAATGGTACTGCTTCCAGGGCCTCATCATCTTTTTCCGCCTGGCCTCGCGCGGCCTGCTCAGCATGAAT CAATCCAAAGACGCCTGCCTAAGTGCTCATTTGGCCATGGCAGTCGTCATGATGCTGATGCATGTCTACGCCCAC AAGTCGATTCGCGTCGACACCTCGATGCTCTTTTCCTGGAACAATGCCTCGTCGATTCCTCCGCCCTCTCCCCGC ACCGCCAAGGAGAATGACTGCAAGACCTTTTCGCAGCTTGTTGACGAAACGCTCGAGTCGGCCAGTCCACAGTCC CAAGCCCGCCACCGTGGCACTGCTGCGACTGGGCATCGTGTTGCCGTCCACACTCCAGTCCATCGTCGGCCTCGG GCCCCAGAACCGGACGAGATGGACTGGTCGCCCATGGCCGCGCCGCACCGCGCCTTGTTGAACCAGCACAATGCG ACAAGAAACGCGCCCGACCTGGGGGCCAACCCTTTTCGATACCCCGTGCCGCCCGCACCCTTCAACCCGGCCAAC CGTGCCTGGGGGAGGCCGTTGGAAGCACAGGAGCCACAGCAAAGCATCCCCCCGGCAAAGGCCAGCCTTGAATTC GGCAGACACGGCAACCCTGTGTGGCAGCCATCCGTCTCGTCGCATGCCGGCGTGGAGTTCAAGCCACCGTCGTTT TTTGCGCAGCCAAGCATGGACGACGACAACTCGCTGGCCGCGCTGCTGGACCGCAGCTTCACCATCAGCCAGCCG CATGGCCACGACTCGGGAGAAGAGACCGAGGTGGAGGACCGAGTCCAGCAAGTGTCTGCGCGAATACCAGGCATA CGTTTGCCTGCTGCCAGGAAGAAGCAGAAGCTGTTGTGTGGCGTCTTGTCGTACGAGTGGCTACTGCTGATGGTG ATGCTGGGCACTTGGATGCTCAGCACGCCGAGACGCGCAATGGGATCTACTTGA |
Gene | >OphauG2|2009 ATGGTGAGCTTCCGCGCGTCGGGGCAGCTGGCCTGCTTTTACTGCGGGCAGCAGTCGTCAAGCCAAGCAGCACCA GGGCGCAAGCACAGCTTTGTGTGCGGGCACTGCGATGCGACCAACTACCTAGACGCAGACGGCGGCATCATGGAC CCGCCTGTTGCGACGGAGCGAGAAAGCGCGCCAAAGCGATATGTTGCTCGTGGGGCGGGCGGGGGAGACGAGACG GTGTTTTGCTCAAGGTGCCTGGAGAACCAGCATCTGTTTACGCGGTGTCTTGCGCAGTACTCAAACAACCGCGAG GACTTTGTGCTGAATCGCGAATACTATAGCTTCCGCAAACAACAGGAGCAGCGCTATCCCCAGGTGTGCGACGCG TGTGCCGTCAAGGTGCAGCAGCGCATCCTCAGGGCGGGCTACACGGCCAAGACGGACCACCTGCGCCGCATGATG GACATGAGCCGCGGCAAACGCATCATGACGACGGAACCCACACGCCTCGACTACGTCAGTGCCATTGGGCGCGCC ACCTGGCGAGCTGGCTTTGTGCTTGAGATGCTGTGGCATGCCAAGGCTGTTGTCTTTGTCTTGGCCAACTCGATG CCGCTTTCTGCCGCCCTTGTCGACCTCTTGGCCTATCTGCCTGCTACACACCGCCTTGCTAGCTGGAGCATTGCT GCCGCCTTTGCTTCTGCTTGGTGGAATCCGCATTTTGTCCAGGTCAACCGCGGCTTCACCAGGCATCTTTTGGGC CTGACGCAATGGTACTGCTTCCAGGGCCTCATCATCTTTTTCCGCCTGGCCTCGCGCGGCCTGCTCAGCATGAAT CAATCCAAAGACGCCTGCCTAAGTGCTCATTTGGCCATGGCAGTCGTCATGATGCTGGTGAGTGGTGCCGCCTCC AAGCCCCGAGTCGATGCTGACGCACGCGCAACAAAGATGCATGTCTACGCCCACAAGTCGATTCGCGTCGACACC TCGATGCTCTTTTCCTGGAACAATGCCTCGTCGATTCCTCCGCCCTCTCCCCGCACCGCCAAGGAGAATGACTGC AAGACCTTTTCGCAGCTTGTTGACGAAACGCTCGAGTCGGCCAGTCCACAGTCCCAAGCCCGCCACCGTGGCACT GCTGCGACTGGGCATCGTGTTGCCGTCCACACTCCAGTCCATCGTCGGCCTCGGGCCCCAGAACCGGACGAGATG GACTGGTCGCCCATGGCCGCGCCGCACCGCGCCTTGTTGAACCAGCACAATGCGACAAGAAACGCGCCCGACCTG GGGGCCAACCCTTTTCGATACCCCGTGCCGCCCGCACCCTTCAACCCGGCCAACCGTGCCTGGGGGAGGCCGTTG GAAGCACAGGAGCCACAGCAAAGCATCCCCCCGGCAAAGGCCAGCCTTGAATTCGGCAGACACGGCAACCCTGTG TGGCAGCCATCCGTCTCGTCGCATGCCGGCGTGGAGTTCAAGCCACCGTCGTTTTTTGCGCAGCCAAGCATGGAC GACGACAACTCGCTGGCCGCGCTGCTGGACCGCAGCTTCACCATCAGCCAGCCGCATGGCCACGACTCGGGAGAA GAGACCGAGGTGGAGGACCGAGTCCAGCAAGTGTCTGCGCGAATACCAGGCATACGTTTGCCTGCTGCCAGGAAG AAGCAGAAGCTGTTGTGTGGCGTCTTGTCGTACGAGTGGCTACTGCTGATGGTGATGCTGGGCACTTGGATGCTC AGCACGGTTTGGACAAGGCACGCACACACTGTGCAGCCGGGGCTCATGGCCGTTGCGGGCATCATGTCGCTGCGC GACGCGGGACATCGCAGCCGAGACGCGCAATGGGATCTACTTGA |