Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|1607
Gene name
Location	Contig_15:20251..21394
Strand	+
Gene length (bp)	1143
Transcript length (bp)	1083
Coding sequence length (bp)	1083
Protein length (aa)	361

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF09531	Ndc1_Nup	Nucleoporin protein Ndc1-Nup	2.3E-95	2	341

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|G0S235\|NDC1_CHATD	Nucleoporin NDC1 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=NDC1 PE=3 SV=1	5	344	8.0E-65
sp\|O13961\|NDC1_SCHPO	Nuclear envelope protein ndc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut11 PE=2 SV=2	9	343	1.0E-13

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 22	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|1607 MFLNFVWFIANLTFSVYMVQAPLRDAEPLTSRSKHPNDVLLNGLMNKKVSIKAFATWELALIAQKFPDRRRAIFD DIDRKGGAMWAQIYDVCTQILKSIEQHIEAYEKPAAAVATAPMPAAPKQRRCPPPRQDTGLYHNKQNSGLIGGME KTLAELSRSPGATPMASWSPLAQKTWNNAKDRMLSKRQQEALSPENIKSEAERWIGRVMDLGWVAALVRQDFDRR FSAAVFGATLAEPSLYMHAAQAMCQMAIHSLDEDDYGNVQRDVATIIRILMSVIEKVEAFKAQMPTHWTDPTDSK ATPTVDTVMDVFRMELRQVVDRFEPYRFDLGLSAVEIRKARILAPQPHEGDALRGRDQGD*
Coding	>OphauG2\|1607 ATGTTTTTGAATTTCGTCTGGTTTATTGCGAACCTGACCTTCTCGGTCTACATGGTACAGGCCCCATTGAGGGAT GCAGAGCCTCTAACATCTAGATCGAAGCACCCTAATGACGTTTTACTCAATGGTCTCATGAACAAGAAAGTGTCC ATCAAGGCTTTTGCCACGTGGGAGCTGGCACTTATTGCCCAAAAGTTTCCGGATCGCAGAAGGGCCATATTCGAC GACATTGATCGTAAAGGCGGTGCCATGTGGGCACAAATATACGATGTCTGCACACAAATTCTCAAGAGCATCGAA CAGCACATCGAGGCATACGAAAAGCCGGCTGCCGCGGTGGCTACCGCTCCTATGCCAGCAGCACCCAAGCAAAGG AGGTGCCCGCCGCCGCGCCAGGACACAGGCCTTTACCATAACAAGCAGAATTCAGGACTGATTGGTGGAATGGAA AAGACTTTGGCAGAATTGTCTCGGTCACCAGGCGCGACTCCAATGGCGAGCTGGAGCCCGTTGGCGCAAAAGACT TGGAACAACGCCAAGGACCGCATGCTTAGCAAAAGGCAGCAAGAAGCACTATCACCCGAAAATATCAAGAGTGAG GCGGAAAGGTGGATAGGCAGAGTGATGGATTTGGGATGGGTAGCAGCCCTGGTGCGCCAAGACTTTGATAGACGC TTTTCTGCCGCTGTCTTTGGGGCGACGCTGGCAGAGCCATCGCTGTACATGCACGCAGCTCAAGCAATGTGCCAG ATGGCTATTCACAGCCTGGACGAGGACGACTATGGCAATGTACAGCGCGACGTTGCGACCATTATCCGCATCTTG ATGAGCGTGATTGAAAAAGTGGAGGCCTTCAAGGCGCAAATGCCGACGCATTGGACTGACCCGACTGACAGCAAA GCGACTCCGACGGTGGACACTGTCATGGATGTGTTTAGGATGGAGTTGCGCCAAGTGGTGGATAGGTTTGAGCCC TATAGGTTCGACCTGGGGCTTTCGGCTGTTGAGATTCGGAAGGCTAGAATCCTGGCACCGCAGCCGCACGAAGGC GACGCCTTGCGAGGAAGAGATCAAGGGGACTAA
Transcript	>OphauG2\|1607 ATGTTTTTGAATTTCGTCTGGTTTATTGCGAACCTGACCTTCTCGGTCTACATGGTACAGGCCCCATTGAGGGAT GCAGAGCCTCTAACATCTAGATCGAAGCACCCTAATGACGTTTTACTCAATGGTCTCATGAACAAGAAAGTGTCC ATCAAGGCTTTTGCCACGTGGGAGCTGGCACTTATTGCCCAAAAGTTTCCGGATCGCAGAAGGGCCATATTCGAC GACATTGATCGTAAAGGCGGTGCCATGTGGGCACAAATATACGATGTCTGCACACAAATTCTCAAGAGCATCGAA CAGCACATCGAGGCATACGAAAAGCCGGCTGCCGCGGTGGCTACCGCTCCTATGCCAGCAGCACCCAAGCAAAGG AGGTGCCCGCCGCCGCGCCAGGACACAGGCCTTTACCATAACAAGCAGAATTCAGGACTGATTGGTGGAATGGAA AAGACTTTGGCAGAATTGTCTCGGTCACCAGGCGCGACTCCAATGGCGAGCTGGAGCCCGTTGGCGCAAAAGACT TGGAACAACGCCAAGGACCGCATGCTTAGCAAAAGGCAGCAAGAAGCACTATCACCCGAAAATATCAAGAGTGAG GCGGAAAGGTGGATAGGCAGAGTGATGGATTTGGGATGGGTAGCAGCCCTGGTGCGCCAAGACTTTGATAGACGC TTTTCTGCCGCTGTCTTTGGGGCGACGCTGGCAGAGCCATCGCTGTACATGCACGCAGCTCAAGCAATGTGCCAG ATGGCTATTCACAGCCTGGACGAGGACGACTATGGCAATGTACAGCGCGACGTTGCGACCATTATCCGCATCTTG ATGAGCGTGATTGAAAAAGTGGAGGCCTTCAAGGCGCAAATGCCGACGCATTGGACTGACCCGACTGACAGCAAA GCGACTCCGACGGTGGACACTGTCATGGATGTGTTTAGGATGGAGTTGCGCCAAGTGGTGGATAGGTTTGAGCCC TATAGGTTCGACCTGGGGCTTTCGGCTGTTGAGATTCGGAAGGCTAGAATCCTGGCACCGCAGCCGCACGAAGGC GACGCCTTGCGAGGAAGAGATCAAGGGGACTAA
Gene	>OphauG2\|1607 ATGTTTTTGAATTTCGTCTGGTTTATTGCGAACCTGACCTTCTCGGTCTACATGGTACAGGCCCCATTGAGGGAT GCAGAGCCTCTAACATCTAGATCGAAGCACCCTAATGACGTTTTACTCAATGGTCTCATGAACAAGAAAGTGTCC ATCAAGGTAGGTGCTTTCCAATGATGCCATGATTGGTGCTTTGAAAAAACACTAACCTGAGAGCAGGCTTTTGCC ACGTGGGAGCTGGCACTTATTGCCCAAAAGTTTCCGGATCGCAGAAGGGCCATATTCGACGACATTGATCGTAAA GGCGGTGCCATGTGGGCACAAATATACGATGTCTGCACACAAATTCTCAAGAGCATCGAACAGCACATCGAGGCA TACGAAAAGCCGGCTGCCGCGGTGGCTACCGCTCCTATGCCAGCAGCACCCAAGCAAAGGAGGTGCCCGCCGCCG CGCCAGGACACAGGCCTTTACCATAACAAGCAGAATTCAGGACTGATTGGTGGAATGGAAAAGACTTTGGCAGAA TTGTCTCGGTCACCAGGCGCGACTCCAATGGCGAGCTGGAGCCCGTTGGCGCAAAAGACTTGGAACAACGCCAAG GACCGCATGCTTAGCAAAAGGCAGCAAGAAGCACTATCACCCGAAAATATCAAGAGTGAGGCGGAAAGGTGGATA GGCAGAGTGATGGATTTGGGATGGGTAGCAGCCCTGGTGCGCCAAGACTTTGATAGACGCTTTTCTGCCGCTGTC TTTGGGGCGACGCTGGCAGAGCCATCGCTGTACATGCACGCAGCTCAAGCAATGTGCCAGATGGCTATTCACAGC CTGGACGAGGACGACTATGGCAATGTACAGCGCGACGTTGCGACCATTATCCGCATCTTGATGAGCGTGATTGAA AAAGTGGAGGCCTTCAAGGCGCAAATGCCGACGCATTGGACTGACCCGACTGACAGCAAAGCGACTCCGACGGTG GACACTGTCATGGATGTGTTTAGGATGGAGTTGCGCCAAGTGGTGGATAGGTTTGAGCCCTATAGGTTCGACCTG GGGCTTTCGGCTGTTGAGATTCGGAAGGCTAGAATCCTGGCACCGCAGCCGCACGAAGGCGACGCCTTGCGAGGA AGAGATCAAGGGGACTAA

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