© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|1606 |
| Gene name | |
| Location | Contig_15:19348..19962 |
| Strand | + |
| Gene length (bp) | 614 |
| Transcript length (bp) | 429 |
| Coding sequence length (bp) | 429 |
| Protein length (aa) | 143 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09531 | Ndc1_Nup | Nucleoporin protein Ndc1-Nup | 1.1E-27 | 17 | 139 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|G0S235|NDC1_CHATD | Nucleoporin NDC1 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=NDC1 PE=3 SV=1 | 7 | 142 | 7.0E-24 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 40 | 19 |
| 2 | 55 | 77 | 22 |
| 3 | 107 | 129 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|1606 MAVTPARRAFYKDTLQPALHRRFSSTTGFLLAVSYLEALLLNSWKSSLSWPFIPIGSNATLSFMIFACGLPILTL RIAHYHVDIKTMPPGLYTLGSNLLRLQMYETAFWYLVSSFIFTNVFLSSMPASANLGWVTHFSGDRA* |
| Coding | >OphauG2|1606 ATGGCAGTCACTCCGGCGCGAAGGGCCTTCTATAAGGACACGCTGCAGCCGGCACTGCATCGACGCTTTTCCTCG ACGACCGGTTTTCTTCTCGCCGTCTCGTATCTGGAAGCTCTGCTCCTAAACTCTTGGAAGAGCTCATTGTCTTGG CCTTTTATTCCGATAGGCTCAAACGCCACTCTATCGTTCATGATTTTTGCCTGTGGGCTCCCAATTTTGACTCTG CGCATTGCGCACTACCACGTGGACATCAAAACGATGCCACCGGGACTATACACACTCGGATCAAACCTACTGAGG CTGCAGATGTACGAGACGGCCTTTTGGTACCTTGTTTCGAGCTTCATCTTTACCAACGTCTTTCTATCAAGCATG CCCGCCTCGGCGAACCTCGGCTGGGTCACGCATTTCAGTGGCGATCGCGCTTGA |
| Transcript | >OphauG2|1606 ATGGCAGTCACTCCGGCGCGAAGGGCCTTCTATAAGGACACGCTGCAGCCGGCACTGCATCGACGCTTTTCCTCG ACGACCGGTTTTCTTCTCGCCGTCTCGTATCTGGAAGCTCTGCTCCTAAACTCTTGGAAGAGCTCATTGTCTTGG CCTTTTATTCCGATAGGCTCAAACGCCACTCTATCGTTCATGATTTTTGCCTGTGGGCTCCCAATTTTGACTCTG CGCATTGCGCACTACCACGTGGACATCAAAACGATGCCACCGGGACTATACACACTCGGATCAAACCTACTGAGG CTGCAGATGTACGAGACGGCCTTTTGGTACCTTGTTTCGAGCTTCATCTTTACCAACGTCTTTCTATCAAGCATG CCCGCCTCGGCGAACCTCGGCTGGGTCACGCATTTCAGTGGCGATCGCGCTTGA |
| Gene | >OphauG2|1606 ATGGCAGTCACTCCGGCGCGAAGGGCCTTCTATAAGGACACGCTGCAGCCGGCACTGCATCGACGCTTTTCCTCG ACGACCGGTTTTCTTCTCGCCGTCTCGTATCTGGAAGCTCTGCTCCTAAACTCTTGGAAGAGCTCATGTAAGTAA CCCCCCATGGCCCGAAAACATCAGTGCGAACTCGTCGCATCAAGAGCCCTTGTCGCCAACATGCTGTGTGTCATA GTGTCTTGGCCTTTTATTCCGATAGGCTCAAACGCCACTCTATCGTTCATGATTTTTGCCTGTGGGCTCCCAATT TTGACTCTGCGCATTGCGCACTACCACGTGGACATCAAAACGATGCCACCGGGACTATACACACTCGGATCAAAC CTACTGAGGCTGCAGATGTACGAGACGGCCTTTTGGTACCTTGTTTCGAGCTTCATCTTTACCAACGTCTTTCTA TCAAGCATGCCCGCCTCGGCGAACCTCGGCTGGGTCACGCATTTCAGTGGCGATCGCGTTCGACTAAATGAGCGC CCCTTGTTCCTTCTTTGCTACATGGCAGTGTGTGCAGTCGTGCAGGCCATTGCGCATTATGCAAGCGACGTTGAC GGGCTTAGGCTTGA |