Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|1519
Gene name
Location	Contig_1461:168..1355
Strand	+
Gene length (bp)	1187
Transcript length (bp)	906
Coding sequence length (bp)	906
Protein length (aa)	302

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF02926	THUMP	THUMP domain	7.8E-11	141	279

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P53072\|TAN1_YEAST	tRNA acetyltransferase TAN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAN1 PE=1 SV=1	52	297	3.0E-27
sp\|Q99J36\|THUM1_MOUSE	THUMP domain-containing protein 1 OS=Mus musculus GN=Thumpd1 PE=1 SV=1	42	296	4.0E-19
sp\|Q24K03\|THUM1_BOVIN	THUMP domain-containing protein 1 OS=Bos taurus GN=THUMPD1 PE=2 SV=1	52	296	4.0E-19
sp\|Q9NXG2\|THUM1_HUMAN	THUMP domain-containing protein 1 OS=Homo sapiens GN=THUMPD1 PE=1 SV=2	1	296	3.0E-18
sp\|P87151\|YB0A_SCHPO	Uncharacterized protein C25H2.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.10c PE=3 SV=2	50	297	6.0E-17

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P53072\|TAN1_YEAST	tRNA acetyltransferase TAN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAN1 PE=1 SV=1	52	297	3.0E-27
sp\|Q99J36\|THUM1_MOUSE	THUMP domain-containing protein 1 OS=Mus musculus GN=Thumpd1 PE=1 SV=1	42	296	4.0E-19
sp\|Q24K03\|THUM1_BOVIN	THUMP domain-containing protein 1 OS=Bos taurus GN=THUMPD1 PE=2 SV=1	52	296	4.0E-19
sp\|Q9NXG2\|THUM1_HUMAN	THUMP domain-containing protein 1 OS=Homo sapiens GN=THUMPD1 PE=1 SV=2	1	296	3.0E-18
sp\|P87151\|YB0A_SCHPO	Uncharacterized protein C25H2.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.10c PE=3 SV=2	50	297	6.0E-17
sp\|Q9VZD8\|THUM1_DROME	THUMP domain-containing protein 1 homolog OS=Drosophila melanogaster GN=CG15014 PE=1 SV=2	51	301	8.0E-09

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GO

GO Term	Description	Terminal node
GO:0003723	RNA binding	Yes
GO:0003674	molecular_function	No
GO:1901363	heterocyclic compound binding	No
GO:0005488	binding	No
GO:0003676	nucleic acid binding	No
GO:0097159	organic cyclic compound binding	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 36	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|1519 MTESVQKTKQRPGAWALQGKDSKKAKCGAGGRWKTPHHKAKAADKAKMGTALEVGDAGIWVTFVRGMGSKAVREF RELCDEYGETLYGLKRPGAEEGVGVEQADQDESIEASVQRELSVMKAEQQEKPDSGAFSMVKTGLECLVFIKTLA PVNAGELVVKMCEDARDCGDARRRKVKYINRLTPVVDTNKATERGMERVARTVLAPHFGLADGGGKQAIGDASTY AVRYKIRKHGGALTSSHVISQVAGLIHGRHRVDLEQPDKVILVEIFQLFCGMAVVDGREWEELKRYNMHQLYGMH D*
Coding	>OphauG2\|1519 ATGACAGAAAGTGTCCAAAAAACAAAGCAAAGACCGGGGGCGTGGGCTTTGCAAGGCAAGGACAGCAAGAAGGCC AAGTGCGGGGCAGGCGGGCGATGGAAAACGCCGCATCACAAAGCAAAGGCAGCGGATAAGGCAAAGATGGGCACA GCACTCGAGGTGGGAGACGCGGGAATTTGGGTCACGTTTGTCAGAGGCATGGGATCCAAGGCGGTGCGTGAGTTT AGAGAGCTATGTGACGAGTACGGCGAGACGTTGTACGGCCTGAAGCGGCCTGGGGCAGAAGAAGGGGTGGGGGTA GAGCAAGCTGATCAAGATGAAAGCATTGAAGCATCGGTGCAGCGCGAACTCAGTGTCATGAAGGCGGAGCAGCAG GAGAAGCCGGACAGCGGAGCTTTCAGCATGGTCAAGACGGGACTTGAGTGCTTGGTGTTTATCAAGACGCTAGCC CCGGTGAATGCGGGAGAACTGGTTGTCAAGATGTGCGAGGACGCGAGAGACTGTGGCGATGCGCGACGGCGCAAG GTCAAGTACATCAACCGACTGACCCCCGTTGTCGACACGAACAAGGCGACGGAACGAGGCATGGAGCGGGTTGCA CGGACAGTGCTGGCGCCGCATTTTGGCCTGGCGGATGGCGGCGGCAAGCAAGCCATTGGCGATGCATCTACATAT GCGGTGCGCTACAAGATACGAAAGCACGGCGGCGCCTTGACTTCGAGCCACGTCATCAGCCAGGTTGCAGGTCTT ATTCATGGCCGGCACAGGGTTGACTTGGAGCAGCCGGACAAGGTGATTCTGGTGGAGATTTTCCAGCTGTTTTGT GGCATGGCTGTCGTTGATGGCCGGGAATGGGAGGAGCTCAAGAGATACAACATGCACCAGCTTTACGGCATGCAC GACTAA
Transcript	>OphauG2\|1519 ATGACAGAAAGTGTCCAAAAAACAAAGCAAAGACCGGGGGCGTGGGCTTTGCAAGGCAAGGACAGCAAGAAGGCC AAGTGCGGGGCAGGCGGGCGATGGAAAACGCCGCATCACAAAGCAAAGGCAGCGGATAAGGCAAAGATGGGCACA GCACTCGAGGTGGGAGACGCGGGAATTTGGGTCACGTTTGTCAGAGGCATGGGATCCAAGGCGGTGCGTGAGTTT AGAGAGCTATGTGACGAGTACGGCGAGACGTTGTACGGCCTGAAGCGGCCTGGGGCAGAAGAAGGGGTGGGGGTA GAGCAAGCTGATCAAGATGAAAGCATTGAAGCATCGGTGCAGCGCGAACTCAGTGTCATGAAGGCGGAGCAGCAG GAGAAGCCGGACAGCGGAGCTTTCAGCATGGTCAAGACGGGACTTGAGTGCTTGGTGTTTATCAAGACGCTAGCC CCGGTGAATGCGGGAGAACTGGTTGTCAAGATGTGCGAGGACGCGAGAGACTGTGGCGATGCGCGACGGCGCAAG GTCAAGTACATCAACCGACTGACCCCCGTTGTCGACACGAACAAGGCGACGGAACGAGGCATGGAGCGGGTTGCA CGGACAGTGCTGGCGCCGCATTTTGGCCTGGCGGATGGCGGCGGCAAGCAAGCCATTGGCGATGCATCTACATAT GCGGTGCGCTACAAGATACGAAAGCACGGCGGCGCCTTGACTTCGAGCCACGTCATCAGCCAGGTTGCAGGTCTT ATTCATGGCCGGCACAGGGTTGACTTGGAGCAGCCGGACAAGGTGATTCTGGTGGAGATTTTCCAGCTGTTTTGT GGCATGGCTGTCGTTGATGGCCGGGAATGGGAGGAGCTCAAGAGATACAACATGCACCAGCTTTACGGCATGCAC GACTAA
Gene	>OphauG2\|1519 ATGACAGAAAGTGTCCAAAAAACAAAGCAAAGACCGGGGGCGTGGGCTTTGCAAGGCAAGGACAGCAAGAAGGCC AAGGTAAGAGAAGGGACAGTACCATAAATATGGCGATAGTGAGGACTTTGTAAGTTGGAACAAACGACTAGGACT GACAGTGATATTTTACCAAAACAGTGCGGGGCAGGCGGGCGATGGAAAACGCCGCATCACAAAGCAAAGGCAGCG GATAAGGCAAAGATGGGCACAGCACTCGAGGTGGGAGACGCGGGAATTTGGGTCACGTTTGTCAGAGGCATGGGA TCCAAGGCGGTGCGTGAGTTTAGAGAGCTATGTGACGAGGTATGGCTGCCAAGCTTTGTCAAGCTGGAGGATGGA AGCAAGGCTAACAAGGGGCGTGGTCAAGTACGGCGAGACGTTGTACGGCCTGAAGCGGCCTGGGGCAGAAGAAGG GGTGGGGGTAGAGCAAGCTGATCAAGATGAAAGCATTGAAGCATCGGTGCAGCGCGAACTCAGTGTCATGAAGGC GGAGCAGCAGGAGAAGCCGGACAGCGGAGCTTTCAGCATGGTCAAGACGGGACTTGAGTGCTTGGTGTTTATCAA GACGCTAGCCCCGGTGAATGCGGGAGAACTGGTTGTCAAGATGTGCGAGGACGCGAGAGACTGTGGCGATGCGCG ACGGCGCAAGGTCAAGTACATCAACCGACTGACCCCCGTTGTCGACACGAACAAGGCGACGGAACGAGGCATGGA GCGGGTTGCACGGACAGTGCTGGCGCCGCATTTTGGCCTGGCGGATGGCGGCGGCAAGCAAGCCATTGGCGATGC ATCTACAGTACGTCGTTGGAGGGACAAGAGCCCATTGAGGTGGGAGAGCGGGCTGACGGGCGCCTCTGGCAGTAT GCGGTGCGCTACAAGATACGAAAGCACGGCGGCGCCTTGACTTCGAGCCACGTCATCAGCCAGGTTGCAGGTCTT ATTCATGGCCGGCACAGGGTTGACTTGGAGCAGCCGGACAAGGTGATTCTGGTGGAGATTTTCCAGGTATGTCAA TGGGTCTGGCGAATGGCATGGCGCGGGCTGACGCACCAGGACCAAAGCTGTTTTGTGGCATGGCTGTCGTTGATG GCCGGGAATGGGAGGAGCTCAAGAGATACAACATGCACCAGCTTTACGGCATGCACGACTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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