Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|1518
Gene name
Location	Contig_1460:2975..3549
Strand	+
Gene length (bp)	574
Transcript length (bp)	501
Coding sequence length (bp)	501
Protein length (aa)	167

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF12273	RCR	Chitin synthesis regulation, resistance to Congo red	8.2E-20	35	164

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q03446\|RCR2_YEAST	Protein RCR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCR2 PE=1 SV=1	28	76	2.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 28	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	33	55	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|1518 MVPYTAASNSLEARYTWECRNGYCRRRSSWYDWGRWIVLGIIVLLALVIFMSCACIARRRRRRGAPPVYGTGWMA PAGKPSGPAPSNYGPPPQDYHQGFNQGAYGVASPPPAYGPQQQPQYTGTTFNANDGYYAAQQPQYGGVQPPHNAY QPDTAYAPPPGPPPGK*
Coding	>OphauG2\|1518 ATGGTACCGTACACGGCGGCCAGCAACAGCCTCGAGGCGCGATATACCTGGGAGTGTCGCAATGGCTACTGCAGG CGACGTAGCTCCTGGTATGATTGGGGGCGGTGGATTGTGCTGGGCATCATTGTCTTGCTGGCACTCGTCATCTTC ATGTCATGCGCTTGCATAGCTCGTCGGCGTCGTCGCCGTGGCGCGCCGCCAGTATATGGAACGGGCTGGATGGCT CCAGCGGGGAAACCAAGCGGCCCTGCTCCCAGCAATTACGGACCGCCGCCTCAGGATTATCACCAGGGCTTCAAC CAAGGGGCCTACGGCGTGGCAAGCCCTCCCCCTGCCTATGGGCCCCAGCAACAGCCTCAGTACACGGGCACAACG TTCAATGCCAACGACGGTTACTACGCAGCCCAGCAGCCGCAATATGGGGGAGTGCAACCTCCGCACAACGCCTAT CAGCCCGACACAGCGTATGCGCCGCCGCCGGGGCCGCCGCCGGGCAAGTAA
Transcript	>OphauG2\|1518 ATGGTACCGTACACGGCGGCCAGCAACAGCCTCGAGGCGCGATATACCTGGGAGTGTCGCAATGGCTACTGCAGG CGACGTAGCTCCTGGTATGATTGGGGGCGGTGGATTGTGCTGGGCATCATTGTCTTGCTGGCACTCGTCATCTTC ATGTCATGCGCTTGCATAGCTCGTCGGCGTCGTCGCCGTGGCGCGCCGCCAGTATATGGAACGGGCTGGATGGCT CCAGCGGGGAAACCAAGCGGCCCTGCTCCCAGCAATTACGGACCGCCGCCTCAGGATTATCACCAGGGCTTCAAC CAAGGGGCCTACGGCGTGGCAAGCCCTCCCCCTGCCTATGGGCCCCAGCAACAGCCTCAGTACACGGGCACAACG TTCAATGCCAACGACGGTTACTACGCAGCCCAGCAGCCGCAATATGGGGGAGTGCAACCTCCGCACAACGCCTAT CAGCCCGACACAGCGTATGCGCCGCCGCCGGGGCCGCCGCCGGGCAAGTAA
Gene	>OphauG2\|1518 ATGGTACCGTACACGGCGGCCAGCAACAGCCTCGAGGCGCGATATACCTGGGAGTGTCGCAATGGCTACTGCAGG CGACGTAGCTCCTGGTATGATTGGGGGCGGTGGATTGTGCTGGGCATCATTGTCTTGCTGGCACTCGTCATCTTC ATGTCATGCGCGTAAGTGGTGCATGGCGCGGGCTGGAGCCTTGTGGTAACACAAGACAAGACACGACTGACTTGG GCCTCGCAGTTGCATAGCTCGTCGGCGTCGTCGCCGTGGCGCGCCGCCAGTATATGGAACGGGCTGGATGGCTCC AGCGGGGAAACCAAGCGGCCCTGCTCCCAGCAATTACGGACCGCCGCCTCAGGATTATCACCAGGGCTTCAACCA AGGGGCCTACGGCGTGGCAAGCCCTCCCCCTGCCTATGGGCCCCAGCAACAGCCTCAGTACACGGGCACAACGTT CAATGCCAACGACGGTTACTACGCAGCCCAGCAGCCGCAATATGGGGGAGTGCAACCTCCGCACAACGCCTATCA GCCCGACACAGCGTATGCGCCGCCGCCGGGGCCGCCGCCGGGCAAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail