Fungal Genomics

at Utrecht University

General Properties

Protein ID	OphauG2\|1485
Gene name
Location	Contig_145:4419..5285
Strand	-
Gene length (bp)	866
Transcript length (bp)	768
Coding sequence length (bp)	768
Protein length (aa)	256

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01535	PPR	PPR repeat	4.9E-03	187	216

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9CA58\|PP120_ARATH	Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1	145	244	5.0E-08
sp\|Q9ZQF1\|PP152_ARATH	Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3 SV=1	146	223	6.0E-08
sp\|Q9LK58\|PP225_ARATH	Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1	146	252	2.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 48	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>OphauG2\|1485 MAKPWRFESSIVPVAHEFYSSTTSPLLQPTPITLSIILRCFIRSLLARDLVSYYDFFAKHLQQLHAQRIPPPFDP RLPSLIHDTFIMSMLDHSFLARPALRVFGDMLRENATTSTTTSTTDTTTDTTTDTTATTTTPHHNVPVHPAPTMF TYNIVLRGLFRRRDGHALAESIIGLMRLHGIQADRKTWNILIRGYANKQDIPSVVAALQEMEAAGFPPDRFTYRG FGRLRDQERALAMMEEALGNHEHSAPNHVA*
Coding	>OphauG2\|1485 ATGGCAAAACCATGGAGGTTTGAGAGCTCCATCGTGCCCGTGGCCCATGAATTCTACTCGAGCACCACTTCGCCA CTCCTACAACCCACGCCAATAACCCTCTCCATCATTCTCCGATGCTTCATCCGCAGCCTCCTGGCCCGTGACCTC GTTTCCTACTACGACTTCTTCGCCAAGCATCTCCAGCAGCTCCACGCTCAGCGCATACCACCACCCTTTGACCCG CGCCTTCCAAGCCTCATCCACGACACCTTCATCATGTCCATGCTAGATCACTCCTTCCTGGCTCGCCCCGCCCTG CGCGTCTTTGGCGACATGCTGCGCGAAAACGCCACCACTTCTACCACCACTTCTACTACGGATACTACCACGGAT ACTACCACGGATACTACCGCCACCACCACTACCCCTCACCACAACGTGCCTGTCCATCCTGCGCCGACAATGTTT ACCTACAACATCGTCTTAAGGGGCCTGTTCAGGCGCCGCGACGGCCATGCCCTTGCCGAAAGCATCATTGGCCTC ATGCGCTTACACGGTATCCAGGCCGACCGCAAAACATGGAACATCTTGATTAGAGGCTATGCCAACAAACAAGAC ATTCCAAGCGTCGTTGCGGCCCTGCAAGAAATGGAGGCGGCCGGCTTTCCCCCAGATCGCTTTACGTATCGCGGT TTTGGCCGGCTTCGTGACCAGGAAAGAGCCTTGGCTATGATGGAGGAAGCTCTTGGGAATCATGAGCATTCCGCC CCTAATCATGTTGCCTAA
Transcript	>OphauG2\|1485 ATGGCAAAACCATGGAGGTTTGAGAGCTCCATCGTGCCCGTGGCCCATGAATTCTACTCGAGCACCACTTCGCCA CTCCTACAACCCACGCCAATAACCCTCTCCATCATTCTCCGATGCTTCATCCGCAGCCTCCTGGCCCGTGACCTC GTTTCCTACTACGACTTCTTCGCCAAGCATCTCCAGCAGCTCCACGCTCAGCGCATACCACCACCCTTTGACCCG CGCCTTCCAAGCCTCATCCACGACACCTTCATCATGTCCATGCTAGATCACTCCTTCCTGGCTCGCCCCGCCCTG CGCGTCTTTGGCGACATGCTGCGCGAAAACGCCACCACTTCTACCACCACTTCTACTACGGATACTACCACGGAT ACTACCACGGATACTACCGCCACCACCACTACCCCTCACCACAACGTGCCTGTCCATCCTGCGCCGACAATGTTT ACCTACAACATCGTCTTAAGGGGCCTGTTCAGGCGCCGCGACGGCCATGCCCTTGCCGAAAGCATCATTGGCCTC ATGCGCTTACACGGTATCCAGGCCGACCGCAAAACATGGAACATCTTGATTAGAGGCTATGCCAACAAACAAGAC ATTCCAAGCGTCGTTGCGGCCCTGCAAGAAATGGAGGCGGCCGGCTTTCCCCCAGATCGCTTTACGTATCGCGGT TTTGGCCGGCTTCGTGACCAGGAAAGAGCCTTGGCTATGATGGAGGAAGCTCTTGGGAATCATGAGCATTCCGCC CCTAATCATGTTGCCTAA
Gene	>OphauG2\|1485 ATGGCAAAGTAAGCAACCCGTTCAGCACCCATGTACCCGCCAACAATGCCCCTGCCAAGGACGATCTCAAAGACA TTGTCACATCCATCGTGGCCCCTCTGAAAAGACCATGGAGGTTTGAGAGCTCCATCGTGCCCGTGGCCCATGAAT TCTACTCGAGCACCACTTCGCCACTCCTACAACCCACGCCAATAACCCTCTCCATCATTCTCCGATGCTTCATCC GCAGCCTCCTGGCCCGTGACCTCGTTTCCTACTACGACTTCTTCGCCAAGCATCTCCAGCAGCTCCACGCTCAGC GCATACCACCACCCTTTGACCCGCGCCTTCCAAGCCTCATCCACGACACCTTCATCATGTCCATGCTAGATCACT CCTTCCTGGCTCGCCCCGCCCTGCGCGTCTTTGGCGACATGCTGCGCGAAAACGCCACCACTTCTACCACCACTT CTACTACGGATACTACCACGGATACTACCACGGATACTACCGCCACCACCACTACCCCTCACCACAACGTGCCTG TCCATCCTGCGCCGACAATGTTTACCTACAACATCGTCTTAAGGGGCCTGTTCAGGCGCCGCGACGGCCATGCCC TTGCCGAAAGCATCATTGGCCTCATGCGCTTACACGGTATCCAGGCCGACCGCAAAACATGGAACATCTTGATTA GAGGCTATGCCAACAAACAAGACATTCCAAGCGTCGTTGCGGCCCTGCAAGAAATGGAGGCGGCCGGCTTTCCCC CAGATCGCTTTACGTATCGCGGTTTTGGCCGGCTTCGTGACCAGGAAAGAGCCTTGGCTATGATGGAGGAAGCTC TTGGGAATCATGAGCATTCCGCCCCTAATCATGTTGCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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