© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | OphauG2|1411 |
| Gene name | |
| Location | Contig_142:18286..18934 |
| Strand | + |
| Gene length (bp) | 648 |
| Transcript length (bp) | 396 |
| Coding sequence length (bp) | 396 |
| Protein length (aa) | 132 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08507 | COPI_assoc | COPI associated protein | 7.2E-31 | 6 | 123 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14223|TVP15_SCHPO | Golgi apparatus membrane protein tvp15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tvp15 PE=3 SV=2 | 1 | 122 | 1.0E-18 |
| sp|Q03860|TVP15_YEAST | Golgi apparatus membrane protein TVP15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TVP15 PE=1 SV=1 | 5 | 119 | 2.0E-13 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 34 | 54 | 20 |
| 3 | 61 | 83 | 22 |
| 4 | 87 | 109 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >OphauG2|1411 MELADMFRLVNLVVGAIVILGGVGHIFGFKLQSIVVGAYMIVFGLSIALLEFQIPPQISRYASFLFSFLGRGAFY IFLGCLLLGDMILQNIAGGIVGIIGVAYVLLEFIPSIEPPSNMREADVAGWGAEQV* |
| Coding | >OphauG2|1411 ATGGAGCTCGCGGACATGTTTCGGCTGGTCAACCTGGTGGTCGGCGCCATCGTTATTCTGGGTGGCGTTGGACAT ATATTCGGTTTCAAGCTCCAGAGCATCGTTGTCGGCGCCTACATGATTGTATTTGGCCTCTCCATTGCTCTTTTG GAATTTCAGATACCACCCCAGATCTCGCGATACGCCTCATTCCTCTTCTCATTTCTGGGACGTGGGGCTTTCTAC ATTTTTCTCGGCTGCTTGCTTCTGGGAGACATGATTCTCCAGAATATTGCCGGTGGCATAGTCGGCATTATCGGC GTAGCCTACGTCCTCCTCGAATTTATCCCATCCATCGAGCCGCCGAGCAACATGCGCGAGGCTGATGTCGCTGGC TGGGGCGCCGAGCAAGTCTAA |
| Transcript | >OphauG2|1411 ATGGAGCTCGCGGACATGTTTCGGCTGGTCAACCTGGTGGTCGGCGCCATCGTTATTCTGGGTGGCGTTGGACAT ATATTCGGTTTCAAGCTCCAGAGCATCGTTGTCGGCGCCTACATGATTGTATTTGGCCTCTCCATTGCTCTTTTG GAATTTCAGATACCACCCCAGATCTCGCGATACGCCTCATTCCTCTTCTCATTTCTGGGACGTGGGGCTTTCTAC ATTTTTCTCGGCTGCTTGCTTCTGGGAGACATGATTCTCCAGAATATTGCCGGTGGCATAGTCGGCATTATCGGC GTAGCCTACGTCCTCCTCGAATTTATCCCATCCATCGAGCCGCCGAGCAACATGCGCGAGGCTGATGTCGCTGGC TGGGGCGCCGAGCAAGTCTAA |
| Gene | >OphauG2|1411 ATGGAGCTCGCGGACATGTTGTGCGTGTTGCTGCCGTAGAGTCCTAATAACGCTCCTAGCTGACAATGTGGCGCA GTCGGCTGGTCAACCTGGTGGTCGGCGCCATCGTTATTCTGGGTGGCGTTGGACATATATTCGGTTTCAAGCTGT ATGCTCATGATTCCACGAGTTGCTATGGAGGCTCTTGATGGCCATGACTAACAGGCAACAATCAGCCAGAGCATC GTTGTCGGCGCCTACATGATTGTATTTGGCCTCTCCATTGCTCTTTTGGGTGGGATACTCTACTTTGACACGTTG TTCAACTTGTCCATGTGACGAGCCTTGCTAACGAAAACTAGAATTTCAGATACCACCCCAGATCTCGCGATACGC CTCATTCCTCTTCTCATTTCTGGGACGTGGGGCTTGTAAGCACTCGGAGTCAACACAATATCGTGACGAGGATAG GGACTCTAACGTCAGATTTCAGTCTACATTTTTCTCGGCTGCTTGCTTCTGGGAGACATGATTCTCCAGAATATT GCCGGTGGCATAGTCGGCATTATCGGCGTAGCCTACGTCCTCCTCGAATTTATCCCATCCATCGAGCCGCCGAGC AACATGCGCGAGGCTGATGTCGCTGGCTGGGGCGCCGAGCAAGTCTAA |